Wall clock time and date at job start Mon Mar 30 2020 06:40:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31513 * 1 3 3 Si 1.86809 * 119.99919 * 2 1 4 4 H 1.48496 * 109.47089 * 0.02562 * 3 2 1 5 5 H 1.48496 * 109.46867 * 240.00078 * 3 2 1 6 6 H 1.48505 * 109.46876 * 120.00091 * 3 2 1 7 7 C 1.37878 * 120.00187 * 180.02562 * 2 1 3 8 8 H 1.08000 * 119.99765 * 179.97438 * 7 2 1 9 9 C 1.50701 * 119.99821 * 359.97438 * 7 2 1 10 10 C 1.53000 * 109.46776 * 180.02562 * 9 7 2 11 11 C 1.53003 * 109.46738 * 180.02562 * 10 9 7 12 12 C 1.53001 * 109.47062 * 127.14296 * 11 10 9 13 13 C 1.50702 * 109.69102 * 82.87245 * 12 11 10 14 14 O 1.20823 * 120.00062 * 94.99591 * 13 12 11 15 15 O 1.34228 * 119.99744 * 274.99879 * 13 12 11 16 16 C 1.53988 * 109.69264 * 203.41626 * 12 11 10 17 17 C 1.45875 * 112.65713 * 38.32004 * 16 12 11 18 18 C 1.54513 * 111.67856 * 61.49784 * 17 16 12 19 19 C 1.50543 * 108.86050 * 282.74948 * 18 17 16 20 20 C 1.53913 * 112.93865 * 91.75332 * 19 18 17 21 21 N 1.44295 * 109.69507 * 322.32205 * 12 11 10 22 22 H 0.96999 * 119.99866 * 180.02562 * 1 2 3 23 23 H 1.08994 * 109.47045 * 299.99898 * 9 7 2 24 24 H 1.09002 * 109.46697 * 60.00335 * 9 7 2 25 25 H 1.08994 * 109.47250 * 299.99772 * 10 9 7 26 26 H 1.08997 * 109.47003 * 60.00254 * 10 9 7 27 27 H 1.09004 * 109.47008 * 247.14141 * 11 10 9 28 28 H 1.09002 * 109.47482 * 7.14071 * 11 10 9 29 29 H 0.96700 * 116.99801 * 179.97438 * 15 13 12 30 30 H 1.09000 * 108.84204 * 159.13672 * 16 12 11 31 31 H 1.09000 * 108.84673 * 277.60595 * 16 12 11 32 32 H 1.09007 * 109.03824 * 182.06434 * 17 16 12 33 33 H 1.09000 * 109.04121 * 301.00271 * 17 16 12 34 34 H 1.08997 * 109.57334 * 42.55858 * 18 17 16 35 35 H 1.09004 * 109.57389 * 162.81083 * 18 17 16 36 36 H 1.08998 * 108.78788 * 212.64947 * 19 18 17 37 37 H 1.09001 * 108.78508 * 330.86059 * 19 18 17 38 38 H 1.09000 * 108.71005 * 78.74967 * 20 19 18 39 39 H 1.09000 * 108.71157 * 196.89449 * 20 19 18 40 40 H 1.00900 * 110.99928 * 101.64116 * 21 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6178 0.0000 4 1 1.2842 2.7465 0.0006 5 1 3.1028 1.6965 -1.2125 6 1 3.1029 1.6964 1.2125 7 6 2.0046 -1.1940 -0.0005 8 1 3.0846 -1.1940 -0.0010 9 6 1.2511 -2.4991 -0.0005 10 6 2.2454 -3.6620 -0.0005 11 6 1.4803 -4.9870 -0.0012 12 6 1.9800 -5.8639 -1.1511 13 6 3.2312 -6.5902 -0.7292 14 8 3.1586 -7.7133 -0.2895 15 8 4.4263 -5.9895 -0.8419 16 6 0.8927 -6.8840 -1.5362 17 6 -0.4517 -6.3209 -1.4787 18 6 -0.6209 -5.1451 -2.4668 19 6 0.0380 -3.9226 -1.8858 20 6 1.5062 -3.7683 -2.3210 21 7 2.2602 -5.0417 -2.3034 22 1 -0.4850 -0.8401 0.0004 23 1 0.6248 -2.5571 0.8896 24 1 0.6241 -2.5566 -0.8904 25 1 2.8720 -3.6043 -0.8905 26 1 2.8720 -3.6042 0.8895 27 1 1.6441 -5.5016 0.9457 28 1 0.4156 -4.7919 -0.1292 29 1 5.2002 -6.4951 -0.5581 30 1 1.0838 -7.2364 -2.5498 31 1 0.9473 -7.7316 -0.8530 32 1 -1.1741 -7.0992 -1.7251 33 1 -0.6450 -5.9643 -0.4669 34 1 -0.1504 -5.3965 -3.4173 35 1 -1.6817 -4.9504 -2.6245 36 1 -0.5171 -3.0400 -2.2038 37 1 -0.0011 -3.9861 -0.7983 38 1 1.5304 -3.3615 -3.3319 39 1 1.9978 -3.0643 -1.6495 40 1 3.2512 -4.8775 -2.3981 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000722759297.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:40:53 Heat of formation + Delta-G solvation = -11.959066 kcal Electronic energy + Delta-G solvation = -21101.691533 eV Core-core repulsion = 18112.695410 eV Total energy + Delta-G solvation = -2988.996123 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 255.162 amu Computer time = 0.30 seconds Orbital eigenvalues (eV) -41.62531 -39.43344 -36.23939 -34.88028 -33.53730 -32.30609 -31.32852 -27.55565 -25.54216 -25.25615 -23.19475 -22.31043 -21.33949 -19.56140 -18.68613 -17.94324 -17.46275 -16.76419 -15.62731 -15.61211 -15.33495 -14.60977 -13.89525 -13.76158 -13.65460 -13.13260 -12.87812 -12.66687 -12.05743 -11.92877 -11.60508 -11.54196 -11.29936 -11.24773 -10.94897 -10.81084 -10.47936 -10.43927 -10.35101 -10.16160 -10.01457 -9.80157 -9.51819 -8.90221 -8.48941 -8.24087 -7.87267 -6.37862 -4.06614 2.21138 3.00282 3.42357 3.43384 3.62215 4.38681 4.52100 4.71505 4.97751 5.06170 5.20117 5.35170 5.37756 5.52141 5.65772 5.68276 5.78839 5.86013 5.99712 6.03870 6.15782 6.26829 6.32410 6.40963 6.45835 6.46908 6.50039 6.61026 6.64595 6.78834 6.83883 6.96826 7.37420 7.43717 7.50153 7.61770 7.93993 8.18567 8.44110 8.86828 9.63974 11.02575 Molecular weight = 255.16amu Principal moments of inertia in cm(-1) A = 0.026086 B = 0.007054 C = 0.006087 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1073.115597 B = 3968.353348 C = 4599.170021 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.911 5.911 2 C 0.017 3.983 3 Si 1.065 2.935 4 H -0.283 1.283 5 H -0.288 1.288 6 H -0.290 1.290 7 C -0.602 4.602 8 H 0.046 0.954 9 C -0.030 4.030 10 C -0.122 4.122 11 C -0.176 4.176 12 C 0.148 3.852 13 C 0.486 3.514 14 O -0.519 6.519 15 O -0.511 6.511 16 C -0.095 4.095 17 C -0.120 4.120 18 C -0.114 4.114 19 C -0.152 4.152 20 C 0.008 3.992 21 N -0.686 5.686 22 H 0.268 0.732 23 H 0.003 0.997 24 H 0.057 0.943 25 H 0.075 0.925 26 H 0.044 0.956 27 H 0.054 0.946 28 H 0.125 0.875 29 H 0.407 0.593 30 H 0.072 0.928 31 H 0.071 0.929 32 H 0.061 0.939 33 H 0.064 0.936 34 H 0.068 0.932 35 H 0.054 0.946 36 H 0.067 0.933 37 H 0.107 0.893 38 H 0.061 0.939 39 H 0.124 0.876 40 H 0.350 0.650 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.979 -11.516 -3.927 12.526 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.548 5.548 2 C -0.187 4.187 3 Si 0.893 3.107 4 H -0.208 1.208 5 H -0.214 1.214 6 H -0.216 1.216 7 C -0.640 4.640 8 H 0.064 0.936 9 C -0.066 4.066 10 C -0.160 4.160 11 C -0.213 4.213 12 C 0.054 3.946 13 C 0.328 3.672 14 O -0.407 6.407 15 O -0.323 6.323 16 C -0.134 4.134 17 C -0.158 4.158 18 C -0.152 4.152 19 C -0.188 4.188 20 C -0.118 4.118 21 N -0.321 5.321 22 H 0.079 0.921 23 H 0.021 0.979 24 H 0.075 0.925 25 H 0.093 0.907 26 H 0.062 0.938 27 H 0.073 0.927 28 H 0.142 0.858 29 H 0.266 0.734 30 H 0.090 0.910 31 H 0.089 0.911 32 H 0.080 0.920 33 H 0.082 0.918 34 H 0.086 0.914 35 H 0.073 0.927 36 H 0.085 0.915 37 H 0.124 0.876 38 H 0.079 0.921 39 H 0.141 0.859 40 H 0.171 0.829 Dipole moment (debyes) X Y Z Total from point charges 1.973 -10.258 -4.301 11.296 hybrid contribution 1.388 -1.622 0.935 2.331 sum 3.361 -11.880 -3.366 12.797 Atomic orbital electron populations 1.70797 1.06821 1.30535 1.46599 1.25765 0.96541 1.02548 0.93846 0.83597 0.74965 0.75626 0.76480 1.20800 1.21445 1.21616 1.22049 0.94156 0.92095 1.55745 0.93611 1.20278 0.95527 0.92785 0.98009 1.22145 0.99406 0.93287 1.01122 1.23342 1.05129 0.96606 0.96212 1.20524 0.88663 0.93836 0.91555 1.23843 0.85092 0.84525 0.73743 1.90663 1.87129 1.19857 1.43016 1.84516 1.17500 1.50990 1.79261 1.20434 0.93405 0.96831 1.02680 1.20627 0.96304 0.98499 1.00332 1.21418 0.99576 0.94954 0.99219 1.22362 0.95052 0.97550 1.03862 1.23665 0.94432 0.90665 1.03036 1.59554 1.13188 1.20897 1.38480 0.92120 0.97908 0.92519 0.90693 0.93765 0.92680 0.85783 0.73400 0.90955 0.91080 0.92025 0.91776 0.91371 0.92682 0.91474 0.87620 0.92070 0.85923 0.82933 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -26.81 13.65 55.43 0.76 -26.05 16 2 C 0.02 0.47 5.46 -17.82 -0.10 0.38 16 3 Si 1.06 24.77 29.90 -169.99 -5.08 19.69 16 4 H -0.28 -6.61 7.11 56.52 0.40 -6.21 16 5 H -0.29 -6.39 7.11 56.52 0.40 -5.98 16 6 H -0.29 -6.51 7.11 56.52 0.40 -6.10 16 7 C -0.60 -16.31 8.81 -34.44 -0.30 -16.61 16 8 H 0.05 1.24 7.74 -52.49 -0.41 0.83 16 9 C -0.03 -0.70 2.44 -27.88 -0.07 -0.77 16 10 C -0.12 -2.40 4.47 -26.73 -0.12 -2.52 16 11 C -0.18 -2.94 3.99 -26.73 -0.11 -3.05 16 12 C 0.15 2.24 0.72 -133.63 -0.10 2.14 16 13 C 0.49 7.31 6.95 36.01 0.25 7.56 16 14 O -0.52 -8.74 16.44 -18.75 -0.31 -9.05 16 15 O -0.51 -6.36 12.18 -39.25 -0.48 -6.84 16 16 C -0.10 -1.34 4.47 -29.59 -0.13 -1.47 16 17 C -0.12 -1.58 5.25 -29.31 -0.15 -1.74 16 18 C -0.11 -1.60 5.63 -27.17 -0.15 -1.76 16 19 C -0.15 -2.53 3.36 -27.48 -0.09 -2.62 16 20 C 0.01 0.13 5.06 -2.75 -0.01 0.12 16 21 N -0.69 -10.43 5.64 -100.93 -0.57 -11.00 16 22 H 0.27 7.77 7.22 -40.82 -0.29 7.48 16 23 H 0.00 0.07 8.01 -51.93 -0.42 -0.35 16 24 H 0.06 1.29 2.95 -53.11 -0.16 1.13 16 25 H 0.08 1.44 4.26 -51.93 -0.22 1.22 16 26 H 0.04 0.91 8.14 -51.93 -0.42 0.49 16 27 H 0.05 0.91 7.94 -51.93 -0.41 0.50 16 28 H 0.13 2.08 2.13 -51.93 -0.11 1.97 16 29 H 0.41 3.16 9.10 45.56 0.41 3.57 16 30 H 0.07 1.01 8.08 -51.93 -0.42 0.59 16 31 H 0.07 1.01 7.04 -51.93 -0.37 0.65 16 32 H 0.06 0.70 8.14 -51.93 -0.42 0.28 16 33 H 0.06 0.86 6.00 -51.93 -0.31 0.55 16 34 H 0.07 0.97 7.79 -51.93 -0.40 0.57 16 35 H 0.05 0.72 8.14 -51.93 -0.42 0.29 16 36 H 0.07 1.20 7.80 -51.93 -0.41 0.80 16 37 H 0.11 1.87 2.42 -51.93 -0.13 1.75 16 38 H 0.06 1.03 8.14 -51.93 -0.42 0.61 16 39 H 0.12 2.44 2.44 -55.48 -0.14 2.31 16 40 H 0.35 5.19 6.79 -39.29 -0.27 4.92 16 LS Contribution 286.04 15.07 4.31 4.31 Total: -1.00 -30.45 286.04 -6.98 -37.43 By element: Atomic # 1 Polarization: 16.38 SS G_CDS: -4.52 Total: 11.86 kcal Atomic # 6 Polarization: -19.25 SS G_CDS: -1.09 Total: -20.34 kcal Atomic # 7 Polarization: -37.24 SS G_CDS: 0.19 Total: -37.06 kcal Atomic # 8 Polarization: -15.10 SS G_CDS: -0.79 Total: -15.89 kcal Atomic # 14 Polarization: 24.77 SS G_CDS: -5.08 Total: 19.69 kcal Total LS contribution 4.31 Total: 4.31 kcal Total: -30.45 -6.98 -37.43 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000722759297.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 25.472 kcal (2) G-P(sol) polarization free energy of solvation -30.449 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -4.976 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.983 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.431 kcal (6) G-S(sol) free energy of system = (1) + (5) -11.959 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.30 seconds