Wall clock time and date at job start Mon Mar 30 2020 06:40:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31513 * 1 3 3 Si 1.86809 * 119.99919 * 2 1 4 4 H 1.48496 * 109.47089 * 0.02562 * 3 2 1 5 5 H 1.48496 * 109.46867 * 240.00078 * 3 2 1 6 6 H 1.48505 * 109.46876 * 120.00091 * 3 2 1 7 7 C 1.37878 * 120.00187 * 180.02562 * 2 1 3 8 8 H 1.08000 * 119.99765 * 179.97438 * 7 2 1 9 9 C 1.50701 * 119.99821 * 359.97438 * 7 2 1 10 10 C 1.53000 * 109.46776 * 180.02562 * 9 7 2 11 11 C 1.53003 * 109.46738 * 180.02562 * 10 9 7 12 12 C 1.53001 * 109.47062 * 127.14296 * 11 10 9 13 13 C 1.50702 * 109.69102 * 82.87245 * 12 11 10 14 14 O 1.20823 * 120.00062 * 94.99591 * 13 12 11 15 15 O 1.34228 * 119.99744 * 274.99879 * 13 12 11 16 16 C 1.53988 * 109.69264 * 203.41626 * 12 11 10 17 17 C 1.45875 * 112.65713 * 38.32004 * 16 12 11 18 18 C 1.54513 * 111.67856 * 61.49784 * 17 16 12 19 19 C 1.50543 * 108.86050 * 282.74948 * 18 17 16 20 20 C 1.53913 * 112.93865 * 91.75332 * 19 18 17 21 21 N 1.44295 * 109.69507 * 322.32205 * 12 11 10 22 22 H 0.96999 * 119.99866 * 180.02562 * 1 2 3 23 23 H 1.08994 * 109.47045 * 299.99898 * 9 7 2 24 24 H 1.09002 * 109.46697 * 60.00335 * 9 7 2 25 25 H 1.08994 * 109.47250 * 299.99772 * 10 9 7 26 26 H 1.08997 * 109.47003 * 60.00254 * 10 9 7 27 27 H 1.09004 * 109.47008 * 247.14141 * 11 10 9 28 28 H 1.09002 * 109.47482 * 7.14071 * 11 10 9 29 29 H 0.96700 * 116.99801 * 179.97438 * 15 13 12 30 30 H 1.09000 * 108.84204 * 159.13672 * 16 12 11 31 31 H 1.09000 * 108.84673 * 277.60595 * 16 12 11 32 32 H 1.09007 * 109.03824 * 182.06434 * 17 16 12 33 33 H 1.09000 * 109.04121 * 301.00271 * 17 16 12 34 34 H 1.08997 * 109.57334 * 42.55858 * 18 17 16 35 35 H 1.09004 * 109.57389 * 162.81083 * 18 17 16 36 36 H 1.08998 * 108.78788 * 212.64947 * 19 18 17 37 37 H 1.09001 * 108.78508 * 330.86059 * 19 18 17 38 38 H 1.09000 * 108.71005 * 78.74967 * 20 19 18 39 39 H 1.09000 * 108.71157 * 196.89449 * 20 19 18 40 40 H 1.00900 * 110.99928 * 101.64116 * 21 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6178 0.0000 4 1 1.2842 2.7465 0.0006 5 1 3.1028 1.6965 -1.2125 6 1 3.1029 1.6964 1.2125 7 6 2.0046 -1.1940 -0.0005 8 1 3.0846 -1.1940 -0.0010 9 6 1.2511 -2.4991 -0.0005 10 6 2.2454 -3.6620 -0.0005 11 6 1.4803 -4.9870 -0.0012 12 6 1.9800 -5.8639 -1.1511 13 6 3.2312 -6.5902 -0.7292 14 8 3.1586 -7.7133 -0.2895 15 8 4.4263 -5.9895 -0.8419 16 6 0.8927 -6.8840 -1.5362 17 6 -0.4517 -6.3209 -1.4787 18 6 -0.6209 -5.1451 -2.4668 19 6 0.0380 -3.9226 -1.8858 20 6 1.5062 -3.7683 -2.3210 21 7 2.2602 -5.0417 -2.3034 22 1 -0.4850 -0.8401 0.0004 23 1 0.6248 -2.5571 0.8896 24 1 0.6241 -2.5566 -0.8904 25 1 2.8720 -3.6043 -0.8905 26 1 2.8720 -3.6042 0.8895 27 1 1.6441 -5.5016 0.9457 28 1 0.4156 -4.7919 -0.1292 29 1 5.2002 -6.4951 -0.5581 30 1 1.0838 -7.2364 -2.5498 31 1 0.9473 -7.7316 -0.8530 32 1 -1.1741 -7.0992 -1.7251 33 1 -0.6450 -5.9643 -0.4669 34 1 -0.1504 -5.3965 -3.4173 35 1 -1.6817 -4.9504 -2.6245 36 1 -0.5171 -3.0400 -2.2038 37 1 -0.0011 -3.9861 -0.7983 38 1 1.5304 -3.3615 -3.3319 39 1 1.9978 -3.0643 -1.6495 40 1 3.2512 -4.8775 -2.3981 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000722759297.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:40:52 Heat of formation + Delta-G solvation = -32.514881 kcal Electronic energy + Delta-G solvation = -21102.582900 eV Core-core repulsion = 18112.695410 eV Total energy + Delta-G solvation = -2989.887490 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 255.162 amu Computer time = 0.34 seconds Orbital eigenvalues (eV) -42.92166 -40.65971 -37.37364 -36.44455 -34.95263 -33.88400 -32.88344 -29.12862 -27.05065 -26.52841 -24.94863 -23.70461 -22.70964 -20.99594 -19.93886 -19.13184 -18.79905 -18.62339 -17.11933 -16.83666 -16.59135 -15.88863 -15.64535 -15.13143 -14.92389 -14.75423 -14.29430 -14.02429 -13.56668 -13.36226 -13.01165 -12.90028 -12.69412 -12.63685 -12.52429 -12.34295 -11.99116 -11.88440 -11.81821 -11.73309 -11.42648 -11.21219 -10.95590 -10.53083 -10.51968 -10.11508 -9.21919 -8.59882 -6.28592 1.02483 1.53667 1.60522 1.79657 1.93517 2.58798 3.10531 3.22736 3.50064 3.70474 3.83658 4.02366 4.11660 4.21886 4.28130 4.42717 4.47085 4.55101 4.65572 4.78716 4.80723 4.94234 5.02280 5.08573 5.15755 5.19805 5.25526 5.31516 5.33438 5.40608 5.49719 5.57354 5.62287 5.68520 6.06853 6.08917 6.28734 6.36749 6.69275 6.90099 7.49265 8.81386 Molecular weight = 255.16amu Principal moments of inertia in cm(-1) A = 0.026086 B = 0.007054 C = 0.006087 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1073.115597 B = 3968.353348 C = 4599.170021 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.937 5.937 2 C -0.034 4.034 3 Si 1.108 2.892 4 H -0.285 1.285 5 H -0.269 1.269 6 H -0.277 1.277 7 C -0.614 4.614 8 H 0.041 0.959 9 C -0.027 4.027 10 C -0.109 4.109 11 C -0.170 4.170 12 C 0.146 3.854 13 C 0.490 3.510 14 O -0.538 6.538 15 O -0.508 6.508 16 C -0.091 4.091 17 C -0.119 4.119 18 C -0.107 4.107 19 C -0.150 4.150 20 C 0.015 3.985 21 N -0.673 5.673 22 H 0.258 0.742 23 H -0.025 1.025 24 H 0.068 0.932 25 H 0.082 0.918 26 H 0.028 0.972 27 H 0.056 0.944 28 H 0.127 0.873 29 H 0.429 0.571 30 H 0.078 0.922 31 H 0.071 0.929 32 H 0.086 0.914 33 H 0.059 0.941 34 H 0.070 0.930 35 H 0.067 0.933 36 H 0.048 0.952 37 H 0.095 0.905 38 H 0.063 0.937 39 H 0.093 0.907 40 H 0.354 0.646 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.684 -12.444 -4.684 13.798 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.575 5.575 2 C -0.232 4.232 3 Si 0.931 3.069 4 H -0.211 1.211 5 H -0.194 1.194 6 H -0.202 1.202 7 C -0.652 4.652 8 H 0.059 0.941 9 C -0.063 4.063 10 C -0.146 4.146 11 C -0.207 4.207 12 C 0.053 3.947 13 C 0.332 3.668 14 O -0.427 6.427 15 O -0.322 6.322 16 C -0.129 4.129 17 C -0.156 4.156 18 C -0.145 4.145 19 C -0.186 4.186 20 C -0.112 4.112 21 N -0.309 5.309 22 H 0.068 0.932 23 H -0.007 1.007 24 H 0.085 0.915 25 H 0.100 0.900 26 H 0.047 0.953 27 H 0.075 0.925 28 H 0.144 0.856 29 H 0.292 0.708 30 H 0.097 0.903 31 H 0.090 0.910 32 H 0.105 0.895 33 H 0.077 0.923 34 H 0.089 0.911 35 H 0.085 0.915 36 H 0.066 0.934 37 H 0.112 0.888 38 H 0.081 0.919 39 H 0.110 0.890 40 H 0.175 0.825 Dipole moment (debyes) X Y Z Total from point charges 2.716 -11.211 -5.057 12.595 hybrid contribution 1.219 -1.346 1.181 2.166 sum 3.934 -12.557 -3.876 13.718 Atomic orbital electron populations 1.70912 1.07725 1.30013 1.48803 1.27126 0.96664 1.06207 0.93209 0.83030 0.74235 0.71917 0.77722 1.21080 1.19425 1.20226 1.22469 0.94241 0.93765 1.54717 0.94062 1.20275 0.95868 0.93100 0.97021 1.21958 0.98527 0.93458 1.00642 1.23234 1.04933 0.95287 0.97264 1.20571 0.89624 0.93885 0.90644 1.23674 0.85636 0.84115 0.73338 1.90663 1.87529 1.20582 1.43907 1.84461 1.17736 1.51150 1.78859 1.20417 0.93209 0.96319 1.02942 1.20627 0.96541 0.98700 0.99739 1.21350 0.99985 0.93836 0.99286 1.22280 0.94853 0.98298 1.03196 1.23433 0.94616 0.90853 1.02268 1.59552 1.13271 1.19694 1.38353 0.93204 1.00708 0.91487 0.90018 0.95291 0.92486 0.85582 0.70844 0.90348 0.91021 0.89546 0.92274 0.91093 0.91468 0.93381 0.88815 0.91859 0.88950 0.82521 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -56.13 13.65 21.45 0.29 -55.83 16 2 C -0.03 -1.91 5.46 84.66 0.46 -1.45 16 3 Si 1.11 49.64 29.90 68.60 2.05 51.69 16 4 H -0.29 -12.84 7.11 99.48 0.71 -12.13 16 5 H -0.27 -11.15 7.11 99.48 0.71 -10.44 16 6 H -0.28 -11.72 7.11 99.48 0.71 -11.01 16 7 C -0.61 -33.69 8.81 25.60 0.23 -33.47 16 8 H 0.04 2.25 7.74 -2.91 -0.02 2.22 16 9 C -0.03 -1.27 2.44 29.85 0.07 -1.20 16 10 C -0.11 -4.27 4.47 30.60 0.14 -4.14 16 11 C -0.17 -5.58 3.99 30.60 0.12 -5.46 16 12 C 0.15 4.19 0.72 3.60 0.00 4.19 16 13 C 0.49 13.75 6.95 71.24 0.50 14.24 16 14 O -0.54 -17.02 16.44 21.97 0.36 -16.66 16 15 O -0.51 -11.52 12.18 -51.39 -0.63 -12.14 16 16 C -0.09 -2.33 4.47 28.74 0.13 -2.20 16 17 C -0.12 -2.85 5.25 28.92 0.15 -2.70 16 18 C -0.11 -2.81 5.63 30.31 0.17 -2.64 16 19 C -0.15 -4.94 3.36 30.11 0.10 -4.83 16 20 C 0.01 0.50 5.06 86.40 0.44 0.94 16 21 N -0.67 -19.39 5.64 -473.24 -2.67 -22.06 16 22 H 0.26 15.46 7.22 -92.71 -0.67 14.79 16 23 H -0.03 -1.35 8.01 -2.39 -0.02 -1.37 16 24 H 0.07 3.12 2.95 -3.50 -0.01 3.11 16 25 H 0.08 3.11 4.26 -2.39 -0.01 3.10 16 26 H 0.03 1.19 8.14 -2.39 -0.02 1.17 16 27 H 0.06 1.84 7.94 -2.39 -0.02 1.83 16 28 H 0.13 4.17 2.13 -2.39 -0.01 4.17 16 29 H 0.43 5.54 9.10 -74.06 -0.67 4.87 16 30 H 0.08 1.95 8.08 -2.39 -0.02 1.93 16 31 H 0.07 1.87 7.04 -2.39 -0.02 1.85 16 32 H 0.09 1.69 8.14 -2.38 -0.02 1.67 16 33 H 0.06 1.49 6.00 -2.39 -0.01 1.48 16 34 H 0.07 1.85 7.79 -2.39 -0.02 1.83 16 35 H 0.07 1.61 8.14 -2.38 -0.02 1.59 16 36 H 0.05 1.75 7.80 -2.39 -0.02 1.73 16 37 H 0.09 3.34 2.42 -2.39 -0.01 3.33 16 38 H 0.06 2.09 8.14 -2.39 -0.02 2.07 16 39 H 0.09 3.69 2.44 -5.72 -0.01 3.68 16 40 H 0.35 9.84 6.79 -89.69 -0.61 9.23 16 Total: -1.00 -64.82 286.04 1.81 -63.01 By element: Atomic # 1 Polarization: 30.80 SS G_CDS: -0.10 Total: 30.70 kcal Atomic # 6 Polarization: -41.22 SS G_CDS: 2.51 Total: -38.71 kcal Atomic # 7 Polarization: -75.52 SS G_CDS: -2.38 Total: -77.90 kcal Atomic # 8 Polarization: -28.53 SS G_CDS: -0.26 Total: -28.80 kcal Atomic # 14 Polarization: 49.64 SS G_CDS: 2.05 Total: 51.69 kcal Total: -64.82 1.81 -63.01 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000722759297.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 30.496 kcal (2) G-P(sol) polarization free energy of solvation -64.823 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -34.327 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.812 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.011 kcal (6) G-S(sol) free energy of system = (1) + (5) -32.515 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.34 seconds