Wall clock time and date at job start Mon Mar 30 2020 06:59:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31521 * 1 3 3 Si 1.86802 * 119.99566 * 2 1 4 4 H 1.48494 * 109.47061 * 269.99332 * 3 2 1 5 5 H 1.48497 * 109.47347 * 29.99879 * 3 2 1 6 6 H 1.48511 * 109.46931 * 149.99505 * 3 2 1 7 7 C 1.37876 * 120.00228 * 179.97438 * 2 1 3 8 8 H 1.07995 * 119.99882 * 180.02562 * 7 2 1 9 9 C 1.50696 * 119.99947 * 0.02562 * 7 2 1 10 10 C 1.53001 * 109.47252 * 180.02562 * 9 7 2 11 11 C 1.52999 * 109.47191 * 180.02562 * 10 9 7 12 12 N 1.46897 * 109.46978 * 180.02562 * 11 10 9 13 13 C 1.46847 * 111.00061 * 189.99863 * 12 11 10 14 14 C 1.53036 * 109.52643 * 185.83811 * 13 12 11 15 15 C 1.53117 * 109.27714 * 300.82301 * 14 13 12 16 16 F 1.39907 * 109.52159 * 297.68181 * 15 14 13 17 17 C 1.53003 * 109.52240 * 177.55934 * 15 14 13 18 18 C 1.53001 * 117.51964 * 111.40972 * 17 15 14 19 19 C 1.52999 * 60.00190 * 107.47982 * 18 17 15 20 20 C 1.53113 * 109.21388 * 57.62124 * 15 14 13 21 21 C 1.46849 * 110.99867 * 314.20727 * 12 11 10 22 22 H 0.96995 * 120.00039 * 0.02562 * 1 2 3 23 23 H 1.09005 * 109.46987 * 59.99709 * 9 7 2 24 24 H 1.09001 * 109.47376 * 300.00502 * 9 7 2 25 25 H 1.09001 * 109.47117 * 60.00238 * 10 9 7 26 26 H 1.08994 * 109.46956 * 300.00204 * 10 9 7 27 27 H 1.09001 * 109.47093 * 59.99981 * 11 10 9 28 28 H 1.09001 * 109.47209 * 300.00246 * 11 10 9 29 29 H 1.09011 * 109.46166 * 65.82443 * 13 12 11 30 30 H 1.09000 * 109.46610 * 305.85975 * 13 12 11 31 31 H 1.09000 * 109.50322 * 180.88364 * 14 13 12 32 32 H 1.08999 * 109.49899 * 60.76361 * 14 13 12 33 33 H 1.09002 * 115.54973 * 325.70756 * 17 15 14 34 34 H 1.09001 * 117.49733 * 214.97413 * 18 17 15 35 35 H 1.08995 * 117.49577 * 359.97438 * 18 17 15 36 36 H 1.09004 * 117.50150 * 252.51496 * 19 18 17 37 37 H 1.09004 * 117.51638 * 107.47550 * 19 18 17 38 38 H 1.08998 * 109.50711 * 62.31989 * 20 15 14 39 39 H 1.09004 * 109.50380 * 182.43954 * 20 15 14 40 40 H 1.08998 * 109.46522 * 294.17541 * 21 12 11 41 41 H 1.08993 * 109.46222 * 54.15269 * 21 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.4967 2.0464 -1.4000 5 1 1.4465 2.6527 0.7000 6 1 3.5467 1.4403 0.7002 7 6 2.0046 -1.1940 0.0005 8 1 3.0846 -1.1939 0.0010 9 6 1.2512 -2.4991 0.0005 10 6 2.2454 -3.6620 0.0018 11 6 1.4805 -4.9871 0.0012 12 7 2.4351 -6.1035 0.0030 13 6 1.7513 -7.3810 -0.2355 14 6 2.7489 -8.5315 -0.0827 15 6 3.8906 -8.3472 -1.0861 16 9 3.3814 -8.3977 -2.3883 17 6 4.9223 -9.4611 -0.8970 18 6 5.0530 -10.5004 -2.0122 19 6 6.1484 -9.4512 -1.8122 20 6 4.5554 -6.9884 -0.8490 21 6 3.5051 -5.8827 -0.9782 22 1 -0.4850 0.8400 -0.0004 23 1 0.6248 -2.5570 -0.8897 24 1 0.6241 -2.5567 0.8902 25 1 2.8714 -3.6039 0.8923 26 1 2.8728 -3.6046 -0.8876 27 1 0.8548 -5.0449 -0.8895 28 1 0.8528 -5.0447 0.8905 29 1 1.3391 -7.3894 -1.2446 30 1 0.9444 -7.5016 0.4872 31 1 2.2445 -9.4784 -0.2753 32 1 3.1511 -8.5321 0.9303 33 1 5.0625 -9.8029 0.1285 34 1 5.2790 -11.5260 -1.7203 35 1 4.4035 -10.3910 -2.8807 36 1 6.2199 -8.6513 -2.5493 37 1 7.0953 -9.7862 -1.3886 38 1 4.9870 -6.9640 0.1516 39 1 5.3409 -6.8335 -1.5887 40 1 3.0847 -5.8981 -1.9837 41 1 3.9721 -4.9151 -0.7947 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000724836908.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:59:51 Heat of formation + Delta-G solvation = -40.644501 kcal Electronic energy + Delta-G solvation = -19317.795657 eV Core-core repulsion = 16339.928429 eV Total energy + Delta-G solvation = -2977.867228 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 255.169 amu Computer time = 0.31 seconds Orbital eigenvalues (eV) -47.79547 -38.75671 -37.22114 -34.29072 -32.63235 -31.08423 -30.48286 -26.77777 -24.69451 -23.68654 -22.34087 -22.26816 -20.73547 -19.87763 -19.43344 -17.03370 -16.29781 -15.71504 -15.46085 -15.13786 -14.91516 -14.48902 -14.32057 -14.12815 -13.73227 -13.10404 -12.51131 -12.36774 -12.19110 -12.10153 -11.90579 -11.64219 -11.52229 -11.26315 -11.18696 -10.98089 -10.85549 -10.80554 -10.51881 -10.42986 -10.16895 -9.92572 -9.58098 -9.30985 -9.02332 -8.32407 -8.02171 -5.97762 -3.99927 3.33452 3.39512 3.43096 3.44427 4.09103 4.18831 4.40412 4.48350 4.52991 4.60830 4.74226 4.88921 5.08582 5.17310 5.35625 5.38026 5.39148 5.43133 5.56850 5.62292 5.63616 5.68960 5.81943 5.85956 5.88451 5.90731 6.00343 6.09422 6.16636 6.29467 6.32189 6.71771 6.79148 7.10360 7.39104 7.40769 7.70018 7.85086 8.02534 8.45594 9.07235 9.63975 11.13710 Molecular weight = 255.17amu Principal moments of inertia in cm(-1) A = 0.043015 B = 0.003718 C = 0.003538 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 650.773426 B = 7528.250322 C = 7911.088402 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.896 5.896 2 C 0.056 3.944 3 Si 0.892 3.108 4 H -0.281 1.281 5 H -0.287 1.287 6 H -0.274 1.274 7 C -0.519 4.519 8 H 0.055 0.945 9 C 0.022 3.978 10 C -0.112 4.112 11 C 0.056 3.944 12 N -0.538 5.538 13 C 0.052 3.948 14 C -0.128 4.128 15 C 0.149 3.851 16 F -0.208 7.208 17 C -0.179 4.179 18 C -0.173 4.173 19 C -0.173 4.173 20 C -0.129 4.129 21 C 0.046 3.954 22 H 0.260 0.740 23 H 0.014 0.986 24 H 0.016 0.984 25 H 0.056 0.944 26 H 0.050 0.950 27 H 0.029 0.971 28 H 0.072 0.928 29 H 0.036 0.964 30 H 0.078 0.922 31 H 0.074 0.926 32 H 0.087 0.913 33 H 0.118 0.882 34 H 0.094 0.906 35 H 0.101 0.899 36 H 0.096 0.904 37 H 0.096 0.904 38 H 0.088 0.912 39 H 0.075 0.925 40 H 0.035 0.965 41 H 0.094 0.906 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.967 -20.545 -1.683 22.480 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.536 5.536 2 C -0.145 4.145 3 Si 0.720 3.280 4 H -0.207 1.207 5 H -0.212 1.212 6 H -0.198 1.198 7 C -0.557 4.557 8 H 0.073 0.927 9 C -0.016 4.016 10 C -0.150 4.150 11 C -0.071 4.071 12 N -0.263 5.263 13 C -0.076 4.076 14 C -0.166 4.166 15 C 0.131 3.869 16 F -0.189 7.189 17 C -0.197 4.197 18 C -0.210 4.210 19 C -0.210 4.210 20 C -0.167 4.167 21 C -0.082 4.082 22 H 0.070 0.930 23 H 0.032 0.968 24 H 0.035 0.965 25 H 0.075 0.925 26 H 0.068 0.932 27 H 0.047 0.953 28 H 0.090 0.910 29 H 0.054 0.946 30 H 0.096 0.904 31 H 0.093 0.907 32 H 0.106 0.894 33 H 0.136 0.864 34 H 0.113 0.887 35 H 0.120 0.880 36 H 0.115 0.885 37 H 0.115 0.885 38 H 0.106 0.894 39 H 0.093 0.907 40 H 0.053 0.947 41 H 0.112 0.888 Dipole moment (debyes) X Y Z Total from point charges 9.008 -20.449 -1.250 22.380 hybrid contribution -0.029 0.945 -0.879 1.291 sum 8.979 -19.503 -2.129 21.576 Atomic orbital electron populations 1.69968 1.06061 1.26550 1.51007 1.25032 0.94846 0.99255 0.95392 0.86599 0.79871 0.83499 0.78064 1.20711 1.21241 1.19848 1.21247 0.93020 0.91064 1.50365 0.92706 1.19070 0.94012 0.91329 0.97151 1.21799 0.99366 0.93106 1.00722 1.22282 0.94010 0.90452 1.00321 1.62085 1.12832 1.02136 1.49278 1.22044 0.96042 0.89395 1.00156 1.22101 0.95995 0.98815 0.99710 1.20433 0.92810 0.95241 0.78423 1.92807 1.88732 1.97417 1.39906 1.22896 0.99339 0.99939 0.97535 1.22975 1.02550 0.94944 1.00514 1.22953 0.93185 1.02179 1.02650 1.22147 0.98305 0.92526 1.03751 1.22201 0.92798 0.99276 0.93914 0.93038 0.96810 0.96536 0.92509 0.93168 0.95290 0.90968 0.94609 0.90377 0.90694 0.89391 0.86422 0.88709 0.88037 0.88509 0.88531 0.89366 0.90683 0.94657 0.88797 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -27.30 13.29 55.43 0.74 -26.56 16 2 C 0.06 1.62 5.46 -17.82 -0.10 1.52 16 3 Si 0.89 21.88 29.54 -169.99 -5.02 16.86 16 4 H -0.28 -6.79 7.11 56.52 0.40 -6.39 16 5 H -0.29 -6.95 7.11 56.52 0.40 -6.55 16 6 H -0.27 -6.56 7.11 56.52 0.40 -6.16 16 7 C -0.52 -14.89 9.11 -34.44 -0.31 -15.21 16 8 H 0.05 1.53 7.74 -52.49 -0.41 1.12 16 9 C 0.02 0.58 4.97 -27.88 -0.14 0.44 16 10 C -0.11 -2.35 4.40 -26.73 -0.12 -2.47 16 11 C 0.06 1.01 5.27 -3.83 -0.02 0.99 16 12 N -0.54 -8.29 4.81 -234.66 -1.13 -9.42 16 13 C 0.05 0.69 5.31 -3.83 -0.02 0.67 16 14 C -0.13 -1.40 5.15 -26.65 -0.14 -1.53 16 15 C 0.15 1.68 1.03 -90.50 -0.09 1.58 16 16 F -0.21 -2.81 14.56 2.25 0.03 -2.77 16 17 C -0.18 -1.63 5.15 -90.61 -0.47 -2.10 16 18 C -0.17 -1.49 9.92 -26.73 -0.27 -1.75 16 19 C -0.17 -1.46 9.74 -26.73 -0.26 -1.72 16 20 C -0.13 -1.53 4.97 -26.65 -0.13 -1.66 16 21 C 0.05 0.68 4.74 -3.83 -0.02 0.66 16 22 H 0.26 7.45 8.31 -40.82 -0.34 7.12 16 23 H 0.01 0.38 8.14 -51.93 -0.42 -0.04 16 24 H 0.02 0.45 8.14 -51.93 -0.42 0.03 16 25 H 0.06 1.20 8.14 -51.93 -0.42 0.77 16 26 H 0.05 1.03 6.21 -51.93 -0.32 0.71 16 27 H 0.03 0.53 8.08 -51.93 -0.42 0.11 16 28 H 0.07 1.29 8.14 -51.93 -0.42 0.86 16 29 H 0.04 0.51 7.88 -51.92 -0.41 0.10 16 30 H 0.08 0.96 8.12 -51.93 -0.42 0.54 16 31 H 0.07 0.73 8.14 -51.93 -0.42 0.30 16 32 H 0.09 0.89 8.14 -51.93 -0.42 0.47 16 33 H 0.12 0.93 8.11 -51.93 -0.42 0.51 16 34 H 0.09 0.67 8.14 -51.93 -0.42 0.25 16 35 H 0.10 0.98 7.22 -51.93 -0.38 0.60 16 36 H 0.10 0.88 7.65 -51.93 -0.40 0.48 16 37 H 0.10 0.68 8.14 -51.93 -0.42 0.26 16 38 H 0.09 1.00 8.14 -51.93 -0.42 0.57 16 39 H 0.07 0.82 7.40 -51.93 -0.38 0.44 16 40 H 0.04 0.56 7.88 -51.93 -0.41 0.15 16 41 H 0.09 1.46 5.81 -51.93 -0.30 1.16 16 LS Contribution 322.44 15.07 4.86 4.86 Total: -1.00 -30.39 322.44 -9.81 -40.20 By element: Atomic # 1 Polarization: 4.63 SS G_CDS: -7.21 Total: -2.58 kcal Atomic # 6 Polarization: -18.51 SS G_CDS: -2.08 Total: -20.59 kcal Atomic # 7 Polarization: -35.58 SS G_CDS: -0.39 Total: -35.97 kcal Atomic # 9 Polarization: -2.81 SS G_CDS: 0.03 Total: -2.77 kcal Atomic # 14 Polarization: 21.88 SS G_CDS: -5.02 Total: 16.86 kcal Total LS contribution 4.86 Total: 4.86 kcal Total: -30.39 -9.81 -40.20 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000724836908.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -0.442 kcal (2) G-P(sol) polarization free energy of solvation -30.393 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -30.835 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.810 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.203 kcal (6) G-S(sol) free energy of system = (1) + (5) -40.645 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.31 seconds