Wall clock time and date at job start Mon Mar 30 2020 06:59:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31521 * 1 3 3 Si 1.86802 * 119.99566 * 2 1 4 4 H 1.48494 * 109.47061 * 269.99332 * 3 2 1 5 5 H 1.48497 * 109.47347 * 29.99879 * 3 2 1 6 6 H 1.48511 * 109.46931 * 149.99505 * 3 2 1 7 7 C 1.37876 * 120.00228 * 179.97438 * 2 1 3 8 8 H 1.07995 * 119.99882 * 180.02562 * 7 2 1 9 9 C 1.50696 * 119.99947 * 0.02562 * 7 2 1 10 10 C 1.53001 * 109.47252 * 180.02562 * 9 7 2 11 11 C 1.52999 * 109.47191 * 180.02562 * 10 9 7 12 12 N 1.46897 * 109.46978 * 180.02562 * 11 10 9 13 13 C 1.46847 * 111.00061 * 189.99863 * 12 11 10 14 14 C 1.53036 * 109.52643 * 185.83811 * 13 12 11 15 15 C 1.53117 * 109.27714 * 300.82301 * 14 13 12 16 16 F 1.39907 * 109.52159 * 297.68181 * 15 14 13 17 17 C 1.53003 * 109.52240 * 177.55934 * 15 14 13 18 18 C 1.53001 * 117.51964 * 111.40972 * 17 15 14 19 19 C 1.52999 * 60.00190 * 107.47982 * 18 17 15 20 20 C 1.53113 * 109.21388 * 57.62124 * 15 14 13 21 21 C 1.46849 * 110.99867 * 314.20727 * 12 11 10 22 22 H 0.96995 * 120.00039 * 0.02562 * 1 2 3 23 23 H 1.09005 * 109.46987 * 59.99709 * 9 7 2 24 24 H 1.09001 * 109.47376 * 300.00502 * 9 7 2 25 25 H 1.09001 * 109.47117 * 60.00238 * 10 9 7 26 26 H 1.08994 * 109.46956 * 300.00204 * 10 9 7 27 27 H 1.09001 * 109.47093 * 59.99981 * 11 10 9 28 28 H 1.09001 * 109.47209 * 300.00246 * 11 10 9 29 29 H 1.09011 * 109.46166 * 65.82443 * 13 12 11 30 30 H 1.09000 * 109.46610 * 305.85975 * 13 12 11 31 31 H 1.09000 * 109.50322 * 180.88364 * 14 13 12 32 32 H 1.08999 * 109.49899 * 60.76361 * 14 13 12 33 33 H 1.09002 * 115.54973 * 325.70756 * 17 15 14 34 34 H 1.09001 * 117.49733 * 214.97413 * 18 17 15 35 35 H 1.08995 * 117.49577 * 359.97438 * 18 17 15 36 36 H 1.09004 * 117.50150 * 252.51496 * 19 18 17 37 37 H 1.09004 * 117.51638 * 107.47550 * 19 18 17 38 38 H 1.08998 * 109.50711 * 62.31989 * 20 15 14 39 39 H 1.09004 * 109.50380 * 182.43954 * 20 15 14 40 40 H 1.08998 * 109.46522 * 294.17541 * 21 12 11 41 41 H 1.08993 * 109.46222 * 54.15269 * 21 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.4967 2.0464 -1.4000 5 1 1.4465 2.6527 0.7000 6 1 3.5467 1.4403 0.7002 7 6 2.0046 -1.1940 0.0005 8 1 3.0846 -1.1939 0.0010 9 6 1.2512 -2.4991 0.0005 10 6 2.2454 -3.6620 0.0018 11 6 1.4805 -4.9871 0.0012 12 7 2.4351 -6.1035 0.0030 13 6 1.7513 -7.3810 -0.2355 14 6 2.7489 -8.5315 -0.0827 15 6 3.8906 -8.3472 -1.0861 16 9 3.3814 -8.3977 -2.3883 17 6 4.9223 -9.4611 -0.8970 18 6 5.0530 -10.5004 -2.0122 19 6 6.1484 -9.4512 -1.8122 20 6 4.5554 -6.9884 -0.8490 21 6 3.5051 -5.8827 -0.9782 22 1 -0.4850 0.8400 -0.0004 23 1 0.6248 -2.5570 -0.8897 24 1 0.6241 -2.5567 0.8902 25 1 2.8714 -3.6039 0.8923 26 1 2.8728 -3.6046 -0.8876 27 1 0.8548 -5.0449 -0.8895 28 1 0.8528 -5.0447 0.8905 29 1 1.3391 -7.3894 -1.2446 30 1 0.9444 -7.5016 0.4872 31 1 2.2445 -9.4784 -0.2753 32 1 3.1511 -8.5321 0.9303 33 1 5.0625 -9.8029 0.1285 34 1 5.2790 -11.5260 -1.7203 35 1 4.4035 -10.3910 -2.8807 36 1 6.2199 -8.6513 -2.5493 37 1 7.0953 -9.7862 -1.3886 38 1 4.9870 -6.9640 0.1516 39 1 5.3409 -6.8335 -1.5887 40 1 3.0847 -5.8981 -1.9837 41 1 3.9721 -4.9151 -0.7947 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000724836908.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:59:50 Heat of formation + Delta-G solvation = -57.518731 kcal Electronic energy + Delta-G solvation = -19318.527378 eV Core-core repulsion = 16339.928429 eV Total energy + Delta-G solvation = -2978.598949 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 255.169 amu Computer time = 0.35 seconds Orbital eigenvalues (eV) -48.75877 -39.89402 -38.04533 -36.02221 -34.33960 -32.32078 -31.91368 -28.47681 -26.14096 -24.70728 -23.92566 -23.04183 -21.85427 -21.20924 -20.57755 -18.53393 -17.84309 -16.78993 -16.60903 -16.38745 -16.19640 -16.01165 -15.62158 -15.31907 -14.91225 -14.36027 -13.96790 -13.79128 -13.51566 -13.33783 -13.19354 -12.87848 -12.83741 -12.50550 -12.44951 -12.40369 -12.25897 -12.13845 -11.71517 -11.61597 -11.48116 -11.35114 -11.17164 -10.94327 -10.71530 -10.55218 -9.31710 -8.20770 -6.32111 1.39734 1.41359 1.52671 2.40497 2.76258 2.88775 3.12339 3.40465 3.56219 3.64454 3.77480 4.00164 4.06938 4.16728 4.20824 4.26068 4.34823 4.40442 4.42294 4.63815 4.65284 4.67760 4.78278 4.84717 4.85457 4.97165 4.99497 5.02935 5.07330 5.13283 5.17251 5.24430 5.26744 5.40253 5.50039 5.71840 5.83801 6.03455 6.13853 6.25764 6.84685 7.37230 8.91319 Molecular weight = 255.17amu Principal moments of inertia in cm(-1) A = 0.043015 B = 0.003718 C = 0.003538 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 650.773426 B = 7528.250322 C = 7911.088402 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.934 5.934 2 C -0.002 4.002 3 Si 0.967 3.033 4 H -0.273 1.273 5 H -0.281 1.281 6 H -0.262 1.262 7 C -0.543 4.543 8 H 0.060 0.940 9 C 0.026 3.974 10 C -0.095 4.095 11 C 0.066 3.934 12 N -0.535 5.535 13 C 0.048 3.952 14 C -0.122 4.122 15 C 0.143 3.857 16 F -0.224 7.224 17 C -0.179 4.179 18 C -0.173 4.173 19 C -0.172 4.172 20 C -0.123 4.123 21 C 0.044 3.956 22 H 0.264 0.736 23 H -0.013 1.013 24 H -0.007 1.007 25 H 0.058 0.942 26 H 0.052 0.948 27 H 0.018 0.982 28 H 0.073 0.927 29 H 0.021 0.979 30 H 0.087 0.913 31 H 0.090 0.910 32 H 0.102 0.898 33 H 0.137 0.863 34 H 0.113 0.887 35 H 0.086 0.914 36 H 0.086 0.914 37 H 0.115 0.885 38 H 0.099 0.901 39 H 0.082 0.918 40 H 0.018 0.982 41 H 0.082 0.918 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.827 -21.537 -1.034 24.128 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.575 5.575 2 C -0.200 4.200 3 Si 0.791 3.209 4 H -0.198 1.198 5 H -0.207 1.207 6 H -0.186 1.186 7 C -0.581 4.581 8 H 0.079 0.921 9 C -0.012 4.012 10 C -0.133 4.133 11 C -0.062 4.062 12 N -0.260 5.260 13 C -0.079 4.079 14 C -0.160 4.160 15 C 0.125 3.875 16 F -0.205 7.205 17 C -0.198 4.198 18 C -0.210 4.210 19 C -0.208 4.208 20 C -0.161 4.161 21 C -0.084 4.084 22 H 0.072 0.928 23 H 0.005 0.995 24 H 0.012 0.988 25 H 0.076 0.924 26 H 0.071 0.929 27 H 0.037 0.963 28 H 0.092 0.908 29 H 0.040 0.960 30 H 0.106 0.894 31 H 0.109 0.891 32 H 0.121 0.879 33 H 0.155 0.845 34 H 0.131 0.869 35 H 0.105 0.895 36 H 0.105 0.895 37 H 0.133 0.867 38 H 0.118 0.882 39 H 0.101 0.899 40 H 0.036 0.964 41 H 0.100 0.900 Dipole moment (debyes) X Y Z Total from point charges 10.879 -21.463 -0.605 24.070 hybrid contribution -0.651 1.237 -1.110 1.785 sum 10.228 -20.226 -1.715 22.730 Atomic orbital electron populations 1.70103 1.07855 1.27802 1.51717 1.26013 0.95795 1.03469 0.94690 0.85424 0.78716 0.78285 0.78492 1.19810 1.20663 1.18580 1.21687 0.93559 0.92328 1.50510 0.92143 1.18969 0.94394 0.93131 0.94691 1.21542 0.98154 0.92783 1.00826 1.22045 0.94016 0.90185 0.99933 1.62106 1.12346 1.02077 1.49485 1.22157 0.97072 0.89082 0.99627 1.22098 0.95340 0.98167 1.00385 1.20600 0.93531 0.95694 0.77666 1.92781 1.89042 1.97498 1.41175 1.22875 0.98910 0.99315 0.98665 1.23014 1.02307 0.95921 0.99778 1.23022 0.93815 1.01810 1.02187 1.22114 0.97458 0.91852 1.04690 1.22211 0.93238 1.00146 0.92767 0.92752 0.99466 0.98820 0.92366 0.92923 0.96331 0.90830 0.96042 0.89420 0.89112 0.87932 0.84537 0.86855 0.89543 0.89550 0.86712 0.88208 0.89917 0.96391 0.89960 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -57.91 13.29 21.45 0.28 -57.62 16 2 C 0.00 -0.12 5.46 84.65 0.46 0.34 16 3 Si 0.97 44.85 29.54 68.60 2.03 46.87 16 4 H -0.27 -12.22 7.11 99.48 0.71 -11.52 16 5 H -0.28 -12.72 7.11 99.48 0.71 -12.01 16 6 H -0.26 -11.55 7.11 99.48 0.71 -10.84 16 7 C -0.54 -31.60 9.11 25.60 0.23 -31.37 16 8 H 0.06 3.37 7.74 -2.91 -0.02 3.34 16 9 C 0.03 1.40 4.97 29.85 0.15 1.55 16 10 C -0.10 -4.07 4.40 30.59 0.13 -3.93 16 11 C 0.07 2.39 5.27 86.30 0.46 2.85 16 12 N -0.54 -16.18 4.81 -896.34 -4.31 -20.48 16 13 C 0.05 1.23 5.31 86.33 0.46 1.69 16 14 C -0.12 -2.38 5.15 30.65 0.16 -2.22 16 15 C 0.14 2.96 1.03 -10.72 -0.01 2.95 16 16 F -0.22 -5.89 14.56 44.97 0.65 -5.24 16 17 C -0.18 -2.78 5.15 -10.79 -0.06 -2.83 16 18 C -0.17 -2.59 9.92 30.59 0.30 -2.29 16 19 C -0.17 -2.49 9.74 30.60 0.30 -2.19 16 20 C -0.12 -2.73 4.97 30.65 0.15 -2.58 16 21 C 0.04 1.29 4.74 86.33 0.41 1.70 16 22 H 0.26 15.29 8.31 -92.71 -0.77 14.52 16 23 H -0.01 -0.77 8.14 -2.38 -0.02 -0.79 16 24 H -0.01 -0.38 8.14 -2.39 -0.02 -0.40 16 25 H 0.06 2.45 8.14 -2.39 -0.02 2.43 16 26 H 0.05 2.20 6.21 -2.39 -0.01 2.19 16 27 H 0.02 0.70 8.08 -2.39 -0.02 0.69 16 28 H 0.07 2.64 8.14 -2.39 -0.02 2.62 16 29 H 0.02 0.61 7.88 -2.38 -0.02 0.59 16 30 H 0.09 2.05 8.12 -2.39 -0.02 2.03 16 31 H 0.09 1.52 8.14 -2.39 -0.02 1.50 16 32 H 0.10 1.74 8.14 -2.39 -0.02 1.72 16 33 H 0.14 1.63 8.11 -2.39 -0.02 1.61 16 34 H 0.11 1.26 8.14 -2.39 -0.02 1.24 16 35 H 0.09 1.57 7.22 -2.39 -0.02 1.55 16 36 H 0.09 1.44 7.65 -2.39 -0.02 1.42 16 37 H 0.11 1.25 8.14 -2.38 -0.02 1.23 16 38 H 0.10 2.01 8.14 -2.39 -0.02 1.99 16 39 H 0.08 1.70 7.40 -2.39 -0.02 1.69 16 40 H 0.02 0.58 7.88 -2.39 -0.02 0.56 16 41 H 0.08 2.56 5.81 -2.39 -0.01 2.54 16 Total: -1.00 -65.69 322.44 2.78 -62.91 By element: Atomic # 1 Polarization: 8.93 SS G_CDS: 0.98 Total: 9.90 kcal Atomic # 6 Polarization: -39.49 SS G_CDS: 3.15 Total: -36.34 kcal Atomic # 7 Polarization: -74.08 SS G_CDS: -4.02 Total: -78.11 kcal Atomic # 9 Polarization: -5.89 SS G_CDS: 0.65 Total: -5.24 kcal Atomic # 14 Polarization: 44.85 SS G_CDS: 2.03 Total: 46.87 kcal Total: -65.69 2.78 -62.91 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000724836908.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 5.394 kcal (2) G-P(sol) polarization free energy of solvation -65.692 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -60.298 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.779 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.913 kcal (6) G-S(sol) free energy of system = (1) + (5) -57.519 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.35 seconds