Wall clock time and date at job start Mon Mar 30 2020 06:58:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52993 * 1 3 3 C 1.53006 * 109.47155 * 2 1 4 4 C 1.53000 * 109.47345 * 119.99819 * 2 1 3 5 5 C 1.52997 * 109.47060 * 65.00157 * 4 2 1 6 6 H 1.09004 * 109.47346 * 305.00346 * 5 4 2 7 7 C 1.52997 * 109.47504 * 185.00270 * 5 4 2 8 8 O 1.45203 * 109.47234 * 65.00037 * 5 4 2 9 9 C 1.34634 * 117.00404 * 210.00135 * 8 5 4 10 10 O 1.21518 * 119.99803 * 0.02562 * 9 8 5 11 11 N 1.34773 * 120.00360 * 179.97438 * 9 8 5 12 12 C 1.47069 * 136.05598 * 359.63178 * 11 9 8 13 13 C 1.53750 * 87.88637 * 152.96288 * 12 11 9 14 14 C 1.50707 * 114.26812 * 139.79431 * 13 12 11 15 15 H 1.07999 * 119.99394 * 266.47428 * 14 13 12 16 16 C 1.37873 * 119.99986 * 86.46791 * 14 13 12 17 17 N 1.31519 * 120.00336 * 0.02562 * 16 14 13 18 18 Si 1.86808 * 119.99834 * 180.02562 * 16 14 13 19 19 H 1.48501 * 109.47078 * 0.02562 * 18 16 14 20 20 H 1.48502 * 109.46758 * 120.00236 * 18 16 14 21 21 H 1.48504 * 109.46944 * 240.00132 * 18 16 14 22 22 C 1.47073 * 136.06015 * 180.02562 * 11 9 8 23 23 H 1.09002 * 109.47179 * 179.97438 * 1 2 3 24 24 H 1.08993 * 109.47639 * 299.99905 * 1 2 3 25 25 H 1.09004 * 109.47135 * 60.00050 * 1 2 3 26 26 H 1.09002 * 109.47493 * 240.00117 * 2 1 3 27 27 H 1.09001 * 109.47241 * 179.97438 * 3 2 1 28 28 H 1.08996 * 109.46751 * 299.99968 * 3 2 1 29 29 H 1.09002 * 109.46824 * 59.99708 * 3 2 1 30 30 H 1.09002 * 109.47398 * 185.00327 * 4 2 1 31 31 H 1.09001 * 109.47194 * 305.00507 * 4 2 1 32 32 H 1.09002 * 109.47016 * 59.99741 * 7 5 4 33 33 H 1.09000 * 109.47400 * 180.02562 * 7 5 4 34 34 H 1.09004 * 109.46881 * 300.00361 * 7 5 4 35 35 H 1.08999 * 113.46413 * 267.69170 * 12 11 9 36 36 H 1.08993 * 113.46945 * 38.13074 * 12 11 9 37 37 H 1.09006 * 114.39481 * 272.67092 * 13 12 11 38 38 H 0.96995 * 119.99766 * 179.97438 * 17 16 14 39 39 H 1.08995 * 113.46566 * 321.86298 * 22 11 9 40 40 H 1.08995 * 113.46903 * 92.24702 * 22 11 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 6 2.0400 -0.7212 1.2492 5 6 1.6353 -2.1954 1.1880 6 1 0.5563 -2.2707 1.0527 7 6 2.0353 -2.8888 2.4918 8 8 2.3087 -2.8363 0.0726 9 6 1.6708 -3.8646 -0.5175 10 8 0.5808 -4.2166 -0.1119 11 7 2.2406 -4.5029 -1.5588 12 6 3.4930 -4.3792 -2.3198 13 6 3.3814 -5.8794 -2.6377 14 6 3.7642 -6.2436 -4.0491 15 1 3.0056 -6.3060 -4.8153 16 6 5.0828 -6.4971 -4.3621 17 7 6.0065 -6.4214 -3.4290 18 14 5.5574 -6.9479 -6.1118 19 1 4.3425 -6.9646 -6.9655 20 1 6.5179 -5.9450 -6.6380 21 1 6.1892 -8.2918 -6.1226 22 6 1.8806 -5.6252 -2.4386 23 1 -0.3634 -1.0277 -0.0005 24 1 -0.3634 0.5138 0.8899 25 1 -0.3634 0.5138 -0.8900 26 1 1.8933 -0.5138 -0.8900 27 1 3.1300 1.4426 0.0005 28 1 1.6766 1.9563 -0.8900 29 1 1.6765 1.9564 0.8900 30 1 3.1263 -0.6442 1.2952 31 1 1.6053 -0.2617 2.1370 32 1 1.5298 -2.4077 3.3291 33 1 1.7474 -3.9392 2.4480 34 1 3.1143 -2.8135 2.6271 35 1 3.4052 -3.7415 -3.1994 36 1 4.3541 -4.1280 -1.7007 37 1 3.8277 -6.5328 -1.8880 38 1 6.9341 -6.6001 -3.6492 39 1 1.3680 -6.4356 -1.9205 40 1 1.3673 -5.3157 -3.3489 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000849433235.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:58:25 Heat of formation + Delta-G solvation = -69.374071 kcal Electronic energy + Delta-G solvation = -19431.563907 eV Core-core repulsion = 16440.078083 eV Total energy + Delta-G solvation = -2991.485825 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 255.162 amu Computer time = 0.29 seconds Orbital eigenvalues (eV) -40.06377 -38.39921 -36.76002 -35.21005 -32.73101 -31.89965 -29.08534 -27.26976 -26.73323 -25.28121 -24.96200 -22.13819 -20.74520 -19.90043 -19.19192 -17.31917 -16.82353 -16.20098 -15.67287 -15.24919 -14.61735 -14.55362 -14.11768 -13.80517 -13.43398 -12.95398 -12.67306 -12.44724 -12.33349 -12.29206 -12.02703 -11.80274 -11.53664 -11.46446 -11.27455 -10.98573 -10.88757 -10.79829 -10.68847 -10.39653 -10.32875 -10.12643 -9.96989 -9.30272 -9.13100 -8.60411 -7.94737 -6.18957 -4.25009 2.61229 3.23094 3.32088 3.35414 3.44832 4.31256 4.47918 4.59731 4.81175 4.88180 5.10803 5.19387 5.24970 5.28883 5.51082 5.55170 5.63544 5.67752 5.75135 5.81877 5.89765 5.95017 6.00413 6.10059 6.13667 6.19681 6.22463 6.27484 6.34825 6.37889 6.54621 6.63145 6.81319 6.99115 7.54029 7.78761 8.15713 8.53159 8.79314 8.89715 9.41978 10.90904 Molecular weight = 255.16amu Principal moments of inertia in cm(-1) A = 0.027734 B = 0.004534 C = 0.004313 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1009.358309 B = 6174.495569 C = 6489.722035 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C -0.101 4.101 3 C -0.144 4.144 4 C -0.110 4.110 5 C 0.100 3.900 6 H 0.087 0.913 7 C -0.170 4.170 8 O -0.361 6.361 9 C 0.666 3.334 10 O -0.596 6.596 11 N -0.632 5.632 12 C 0.104 3.896 13 C 0.035 3.965 14 C -0.517 4.517 15 H 0.065 0.935 16 C 0.069 3.931 17 N -0.884 5.884 18 Si 0.896 3.104 19 H -0.271 1.271 20 H -0.283 1.283 21 H -0.283 1.283 22 C 0.124 3.876 23 H 0.057 0.943 24 H 0.053 0.947 25 H 0.053 0.947 26 H 0.077 0.923 27 H 0.055 0.945 28 H 0.053 0.947 29 H 0.052 0.948 30 H 0.074 0.926 31 H 0.081 0.919 32 H 0.070 0.930 33 H 0.063 0.937 34 H 0.064 0.936 35 H 0.074 0.926 36 H 0.062 0.938 37 H 0.071 0.929 38 H 0.264 0.736 39 H 0.060 0.940 40 H 0.076 0.924 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.936 11.423 7.554 14.926 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.119 4.119 3 C -0.202 4.202 4 C -0.148 4.148 5 C 0.044 3.956 6 H 0.105 0.895 7 C -0.228 4.228 8 O -0.276 6.276 9 C 0.422 3.578 10 O -0.488 6.488 11 N -0.373 5.373 12 C -0.018 4.018 13 C 0.015 3.985 14 C -0.555 4.555 15 H 0.084 0.916 16 C -0.135 4.135 17 N -0.521 5.521 18 Si 0.724 3.276 19 H -0.195 1.195 20 H -0.209 1.209 21 H -0.208 1.208 22 C 0.003 3.997 23 H 0.076 0.924 24 H 0.072 0.928 25 H 0.073 0.927 26 H 0.095 0.905 27 H 0.074 0.926 28 H 0.072 0.928 29 H 0.071 0.929 30 H 0.093 0.907 31 H 0.099 0.901 32 H 0.088 0.912 33 H 0.082 0.918 34 H 0.083 0.917 35 H 0.092 0.908 36 H 0.080 0.920 37 H 0.089 0.911 38 H 0.074 0.926 39 H 0.079 0.921 40 H 0.094 0.906 Dipole moment (debyes) X Y Z Total from point charges -6.163 11.466 7.949 15.252 hybrid contribution 0.299 -0.115 -0.789 0.852 sum -5.864 11.351 7.160 14.645 Atomic orbital electron populations 1.21920 0.95379 1.02057 1.01493 1.21120 0.95785 0.96109 0.98926 1.21819 1.01050 0.95829 1.01483 1.21799 1.02291 0.92177 0.98495 1.22651 0.98008 0.91286 0.83616 0.89522 1.22212 1.02431 1.01745 0.96369 1.86330 1.49780 1.44980 1.46487 1.17547 0.81440 0.78602 0.80198 1.90892 1.21320 1.68973 1.67636 1.48772 1.24578 1.34990 1.28951 1.23670 0.83501 1.02215 0.92397 1.20441 0.88238 0.91308 0.98484 1.20918 0.93212 1.48154 0.93251 0.91641 1.25034 0.96549 0.94410 0.97510 1.69969 1.01364 1.47991 1.32782 0.86466 0.78665 0.78160 0.84323 1.19516 1.20887 1.20848 1.23406 1.01458 0.84878 0.89929 0.92359 0.92806 0.92745 0.90477 0.92600 0.92751 0.92914 0.90712 0.90064 0.91154 0.91763 0.91739 0.90822 0.91974 0.91120 0.92631 0.92147 0.90601 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.68 8.95 37.15 0.33 -1.35 16 2 C -0.10 -1.18 2.87 -90.62 -0.26 -1.44 16 3 C -0.14 -1.38 9.19 37.16 0.34 -1.04 16 4 C -0.11 -1.26 4.40 -26.73 -0.12 -1.38 16 5 C 0.10 1.46 2.43 -26.73 -0.06 1.40 16 6 H 0.09 1.35 5.36 -51.93 -0.28 1.07 16 7 C -0.17 -2.21 9.55 37.16 0.35 -1.86 16 8 O -0.36 -6.75 9.37 -40.31 -0.38 -7.12 16 9 C 0.67 14.26 8.93 54.05 0.48 14.74 16 10 O -0.60 -13.70 16.38 -19.29 -0.32 -14.01 16 11 N -0.63 -13.73 3.69 -190.91 -0.70 -14.44 16 12 C 0.10 2.31 8.23 -8.37 -0.07 2.24 16 13 C 0.03 0.82 3.79 -91.11 -0.35 0.47 16 14 C -0.52 -13.10 8.83 -34.44 -0.30 -13.41 16 15 H 0.07 1.61 7.81 -52.49 -0.41 1.20 16 16 C 0.07 1.78 5.46 -17.82 -0.10 1.69 16 17 N -0.88 -24.14 13.26 55.43 0.74 -23.41 16 18 Si 0.90 19.96 29.54 -169.99 -5.02 14.94 16 19 H -0.27 -5.92 7.11 56.52 0.40 -5.51 16 20 H -0.28 -6.29 7.11 56.52 0.40 -5.89 16 21 H -0.28 -6.30 7.11 56.52 0.40 -5.90 16 22 C 0.12 2.61 8.17 -8.49 -0.07 2.54 16 23 H 0.06 0.75 6.46 -51.93 -0.34 0.42 16 24 H 0.05 0.51 8.14 -51.93 -0.42 0.08 16 25 H 0.05 0.57 8.14 -51.93 -0.42 0.15 16 26 H 0.08 1.09 7.69 -51.93 -0.40 0.69 16 27 H 0.05 0.53 8.14 -51.93 -0.42 0.10 16 28 H 0.05 0.50 8.14 -51.93 -0.42 0.07 16 29 H 0.05 0.44 8.14 -51.93 -0.42 0.02 16 30 H 0.07 0.86 8.14 -51.93 -0.42 0.43 16 31 H 0.08 0.75 8.14 -51.93 -0.42 0.32 16 32 H 0.07 0.71 8.14 -51.93 -0.42 0.29 16 33 H 0.06 0.96 8.14 -51.93 -0.42 0.53 16 34 H 0.06 0.80 8.14 -51.93 -0.42 0.38 16 35 H 0.07 1.59 8.10 -51.93 -0.42 1.17 16 36 H 0.06 1.40 8.14 -51.93 -0.42 0.98 16 37 H 0.07 1.82 8.11 -51.93 -0.42 1.40 16 38 H 0.26 6.84 8.31 -40.82 -0.34 6.50 16 39 H 0.06 1.23 8.14 -51.93 -0.42 0.80 16 40 H 0.08 1.51 8.10 -51.93 -0.42 1.09 16 LS Contribution 332.02 15.07 5.00 5.00 Total: -1.00 -28.64 332.02 -7.39 -36.03 By element: Atomic # 1 Polarization: 7.29 SS G_CDS: -6.89 Total: 0.39 kcal Atomic # 6 Polarization: 2.43 SS G_CDS: 0.18 Total: 2.61 kcal Atomic # 7 Polarization: -37.88 SS G_CDS: 0.03 Total: -37.84 kcal Atomic # 8 Polarization: -20.45 SS G_CDS: -0.69 Total: -21.14 kcal Atomic # 14 Polarization: 19.96 SS G_CDS: -5.02 Total: 14.94 kcal Total LS contribution 5.00 Total: 5.00 kcal Total: -28.64 -7.39 -36.03 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000849433235.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -33.340 kcal (2) G-P(sol) polarization free energy of solvation -28.644 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -61.984 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.390 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.034 kcal (6) G-S(sol) free energy of system = (1) + (5) -69.374 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.29 seconds