Wall clock time and date at job start Mon Mar 30 2020 06:58:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52993 * 1 3 3 C 1.53006 * 109.47155 * 2 1 4 4 C 1.53000 * 109.47345 * 119.99819 * 2 1 3 5 5 C 1.52997 * 109.47060 * 65.00157 * 4 2 1 6 6 H 1.09004 * 109.47346 * 305.00346 * 5 4 2 7 7 C 1.52997 * 109.47504 * 185.00270 * 5 4 2 8 8 O 1.45203 * 109.47234 * 65.00037 * 5 4 2 9 9 C 1.34634 * 117.00404 * 210.00135 * 8 5 4 10 10 O 1.21518 * 119.99803 * 0.02562 * 9 8 5 11 11 N 1.34773 * 120.00360 * 179.97438 * 9 8 5 12 12 C 1.47069 * 136.05598 * 359.63178 * 11 9 8 13 13 C 1.53750 * 87.88637 * 152.96288 * 12 11 9 14 14 C 1.50707 * 114.26812 * 139.79431 * 13 12 11 15 15 H 1.07999 * 119.99394 * 266.47428 * 14 13 12 16 16 C 1.37873 * 119.99986 * 86.46791 * 14 13 12 17 17 N 1.31519 * 120.00336 * 0.02562 * 16 14 13 18 18 Si 1.86808 * 119.99834 * 180.02562 * 16 14 13 19 19 H 1.48501 * 109.47078 * 0.02562 * 18 16 14 20 20 H 1.48502 * 109.46758 * 120.00236 * 18 16 14 21 21 H 1.48504 * 109.46944 * 240.00132 * 18 16 14 22 22 C 1.47073 * 136.06015 * 180.02562 * 11 9 8 23 23 H 1.09002 * 109.47179 * 179.97438 * 1 2 3 24 24 H 1.08993 * 109.47639 * 299.99905 * 1 2 3 25 25 H 1.09004 * 109.47135 * 60.00050 * 1 2 3 26 26 H 1.09002 * 109.47493 * 240.00117 * 2 1 3 27 27 H 1.09001 * 109.47241 * 179.97438 * 3 2 1 28 28 H 1.08996 * 109.46751 * 299.99968 * 3 2 1 29 29 H 1.09002 * 109.46824 * 59.99708 * 3 2 1 30 30 H 1.09002 * 109.47398 * 185.00327 * 4 2 1 31 31 H 1.09001 * 109.47194 * 305.00507 * 4 2 1 32 32 H 1.09002 * 109.47016 * 59.99741 * 7 5 4 33 33 H 1.09000 * 109.47400 * 180.02562 * 7 5 4 34 34 H 1.09004 * 109.46881 * 300.00361 * 7 5 4 35 35 H 1.08999 * 113.46413 * 267.69170 * 12 11 9 36 36 H 1.08993 * 113.46945 * 38.13074 * 12 11 9 37 37 H 1.09006 * 114.39481 * 272.67092 * 13 12 11 38 38 H 0.96995 * 119.99766 * 179.97438 * 17 16 14 39 39 H 1.08995 * 113.46566 * 321.86298 * 22 11 9 40 40 H 1.08995 * 113.46903 * 92.24702 * 22 11 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 6 2.0400 -0.7212 1.2492 5 6 1.6353 -2.1954 1.1880 6 1 0.5563 -2.2707 1.0527 7 6 2.0353 -2.8888 2.4918 8 8 2.3087 -2.8363 0.0726 9 6 1.6708 -3.8646 -0.5175 10 8 0.5808 -4.2166 -0.1119 11 7 2.2406 -4.5029 -1.5588 12 6 3.4930 -4.3792 -2.3198 13 6 3.3814 -5.8794 -2.6377 14 6 3.7642 -6.2436 -4.0491 15 1 3.0056 -6.3060 -4.8153 16 6 5.0828 -6.4971 -4.3621 17 7 6.0065 -6.4214 -3.4290 18 14 5.5574 -6.9479 -6.1118 19 1 4.3425 -6.9646 -6.9655 20 1 6.5179 -5.9450 -6.6380 21 1 6.1892 -8.2918 -6.1226 22 6 1.8806 -5.6252 -2.4386 23 1 -0.3634 -1.0277 -0.0005 24 1 -0.3634 0.5138 0.8899 25 1 -0.3634 0.5138 -0.8900 26 1 1.8933 -0.5138 -0.8900 27 1 3.1300 1.4426 0.0005 28 1 1.6766 1.9563 -0.8900 29 1 1.6765 1.9564 0.8900 30 1 3.1263 -0.6442 1.2952 31 1 1.6053 -0.2617 2.1370 32 1 1.5298 -2.4077 3.3291 33 1 1.7474 -3.9392 2.4480 34 1 3.1143 -2.8135 2.6271 35 1 3.4052 -3.7415 -3.1994 36 1 4.3541 -4.1280 -1.7007 37 1 3.8277 -6.5328 -1.8880 38 1 6.9341 -6.6001 -3.6492 39 1 1.3680 -6.4356 -1.9205 40 1 1.3673 -5.3157 -3.3489 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000849433235.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:58:24 Heat of formation + Delta-G solvation = -84.842993 kcal Electronic energy + Delta-G solvation = -19432.234690 eV Core-core repulsion = 16440.078083 eV Total energy + Delta-G solvation = -2992.156607 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 255.162 amu Computer time = 0.34 seconds Orbital eigenvalues (eV) -41.66720 -40.00859 -38.08695 -36.57421 -34.67605 -33.06514 -30.87370 -28.08883 -27.69847 -27.16145 -26.74624 -23.57119 -22.17022 -21.01309 -20.76161 -19.07430 -18.61647 -17.83873 -17.27527 -16.48705 -16.20795 -15.81957 -15.60429 -15.21540 -14.69768 -14.22886 -14.00728 -13.89926 -13.66654 -13.31008 -13.22609 -13.15152 -13.07192 -12.80327 -12.73436 -12.58680 -12.36980 -12.19080 -11.98296 -11.83334 -11.57970 -11.41049 -11.23965 -11.12241 -11.04633 -10.56743 -9.71275 -8.16659 -6.28523 1.07503 1.48159 1.51604 1.62392 1.74978 2.46301 2.94015 3.14475 3.60184 3.82842 3.95859 4.12023 4.15286 4.22529 4.32908 4.33504 4.42551 4.57522 4.64391 4.67273 4.73405 4.77094 4.79433 4.82734 4.93445 4.96921 4.98878 4.99194 5.04538 5.14178 5.28327 5.38005 5.45619 5.52285 5.57671 5.80811 6.20489 6.79437 6.81541 7.22097 7.42083 8.93976 Molecular weight = 255.16amu Principal moments of inertia in cm(-1) A = 0.027734 B = 0.004534 C = 0.004313 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1009.358309 B = 6174.495569 C = 6489.722035 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.103 4.103 3 C -0.139 4.139 4 C -0.103 4.103 5 C 0.089 3.911 6 H 0.076 0.924 7 C -0.166 4.166 8 O -0.367 6.367 9 C 0.666 3.334 10 O -0.615 6.615 11 N -0.638 5.638 12 C 0.117 3.883 13 C 0.025 3.975 14 C -0.526 4.526 15 H 0.072 0.928 16 C 0.020 3.980 17 N -0.920 5.920 18 Si 0.962 3.038 19 H -0.261 1.261 20 H -0.281 1.281 21 H -0.283 1.283 22 C 0.132 3.868 23 H 0.033 0.967 24 H 0.076 0.924 25 H 0.057 0.943 26 H 0.044 0.956 27 H 0.055 0.945 28 H 0.056 0.944 29 H 0.071 0.929 30 H 0.076 0.924 31 H 0.115 0.885 32 H 0.105 0.895 33 H 0.038 0.962 34 H 0.069 0.931 35 H 0.081 0.919 36 H 0.051 0.949 37 H 0.042 0.958 38 H 0.265 0.735 39 H 0.066 0.934 40 H 0.093 0.907 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.410 12.869 7.674 16.297 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.122 4.122 3 C -0.197 4.197 4 C -0.140 4.140 5 C 0.034 3.966 6 H 0.094 0.906 7 C -0.224 4.224 8 O -0.281 6.281 9 C 0.423 3.577 10 O -0.509 6.509 11 N -0.379 5.379 12 C -0.005 4.005 13 C 0.006 3.994 14 C -0.564 4.564 15 H 0.091 0.909 16 C -0.180 4.180 17 N -0.558 5.558 18 Si 0.787 3.213 19 H -0.185 1.185 20 H -0.207 1.207 21 H -0.209 1.209 22 C 0.012 3.988 23 H 0.053 0.947 24 H 0.095 0.905 25 H 0.076 0.924 26 H 0.062 0.938 27 H 0.074 0.926 28 H 0.075 0.925 29 H 0.090 0.910 30 H 0.095 0.905 31 H 0.133 0.867 32 H 0.124 0.876 33 H 0.057 0.943 34 H 0.088 0.912 35 H 0.099 0.901 36 H 0.070 0.930 37 H 0.060 0.940 38 H 0.074 0.926 39 H 0.084 0.916 40 H 0.111 0.889 Dipole moment (debyes) X Y Z Total from point charges -6.649 12.925 8.077 16.628 hybrid contribution 0.407 -0.533 -0.742 1.000 sum -6.242 12.392 7.335 15.695 Atomic orbital electron populations 1.21893 0.94973 1.00851 1.02806 1.21116 0.96148 0.97272 0.97648 1.21773 1.01027 0.94267 1.02589 1.21852 1.02632 0.89769 0.99762 1.23120 0.97381 0.93147 0.82946 0.90579 1.22219 1.03148 1.00347 0.96654 1.86344 1.50103 1.44012 1.47669 1.17598 0.81258 0.78930 0.79938 1.90867 1.22161 1.69723 1.68109 1.48764 1.24458 1.35367 1.29318 1.23448 0.83435 1.01169 0.92461 1.20305 0.90120 0.91698 0.97287 1.21224 0.93515 1.47691 0.93949 0.90948 1.25804 0.96575 0.94421 1.01188 1.70083 1.01682 1.49295 1.34775 0.85445 0.78455 0.77567 0.79821 1.18498 1.20735 1.20902 1.23321 0.99809 0.85073 0.90628 0.94739 0.90530 0.92438 0.93777 0.92618 0.92525 0.90952 0.90516 0.86702 0.87643 0.94293 0.91226 0.90052 0.93034 0.93977 0.92618 0.91556 0.88936 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.08 8.95 71.98 0.64 -2.44 16 2 C -0.10 -2.27 2.87 -10.79 -0.03 -2.30 16 3 C -0.14 -2.34 9.19 71.98 0.66 -1.68 16 4 C -0.10 -2.14 4.40 30.59 0.13 -2.01 16 5 C 0.09 2.52 2.43 30.59 0.07 2.60 16 6 H 0.08 2.35 5.36 -2.39 -0.01 2.33 16 7 C -0.17 -4.10 9.55 71.98 0.69 -3.42 16 8 O -0.37 -13.79 9.37 -55.43 -0.52 -14.31 16 9 C 0.67 28.79 8.93 129.79 1.16 29.94 16 10 O -0.61 -28.49 16.38 19.78 0.32 -28.17 16 11 N -0.64 -27.92 3.69 -988.33 -3.64 -31.56 16 12 C 0.12 5.25 8.23 83.27 0.69 5.94 16 13 C 0.03 1.22 3.79 -11.11 -0.04 1.18 16 14 C -0.53 -26.55 8.83 25.60 0.23 -26.32 16 15 H 0.07 3.49 7.81 -2.91 -0.02 3.46 16 16 C 0.02 1.05 5.46 84.65 0.46 1.52 16 17 N -0.92 -50.85 13.26 21.45 0.28 -50.56 16 18 Si 0.96 40.64 29.54 68.60 2.03 42.67 16 19 H -0.26 -10.53 7.11 99.48 0.71 -9.82 16 20 H -0.28 -11.76 7.11 99.48 0.71 -11.05 16 21 H -0.28 -11.91 7.11 99.48 0.71 -11.20 16 22 C 0.13 5.55 8.17 83.18 0.68 6.23 16 23 H 0.03 0.87 6.46 -2.39 -0.02 0.86 16 24 H 0.08 1.23 8.14 -2.39 -0.02 1.21 16 25 H 0.06 1.14 8.14 -2.38 -0.02 1.12 16 26 H 0.04 1.25 7.69 -2.39 -0.02 1.23 16 27 H 0.05 0.94 8.14 -2.39 -0.02 0.92 16 28 H 0.06 0.92 8.14 -2.39 -0.02 0.91 16 29 H 0.07 0.95 8.14 -2.39 -0.02 0.93 16 30 H 0.08 1.59 8.14 -2.39 -0.02 1.57 16 31 H 0.11 1.66 8.14 -2.39 -0.02 1.64 16 32 H 0.10 1.83 8.14 -2.39 -0.02 1.81 16 33 H 0.04 1.15 8.14 -2.39 -0.02 1.13 16 34 H 0.07 1.63 8.14 -2.39 -0.02 1.61 16 35 H 0.08 3.50 8.10 -2.39 -0.02 3.48 16 36 H 0.05 2.38 8.14 -2.39 -0.02 2.36 16 37 H 0.04 2.25 8.11 -2.38 -0.02 2.23 16 38 H 0.26 13.87 8.31 -92.71 -0.77 13.10 16 39 H 0.07 2.69 8.14 -2.39 -0.02 2.67 16 40 H 0.09 3.58 8.10 -2.39 -0.02 3.56 16 Total: -1.00 -61.44 332.02 4.80 -56.64 By element: Atomic # 1 Polarization: 15.07 SS G_CDS: 0.99 Total: 16.06 kcal Atomic # 6 Polarization: 3.89 SS G_CDS: 5.34 Total: 9.24 kcal Atomic # 7 Polarization: -78.77 SS G_CDS: -3.36 Total: -82.13 kcal Atomic # 8 Polarization: -42.28 SS G_CDS: -0.20 Total: -42.47 kcal Atomic # 14 Polarization: 40.64 SS G_CDS: 2.03 Total: 42.67 kcal Total: -61.44 4.80 -56.64 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000849433235.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -28.205 kcal (2) G-P(sol) polarization free energy of solvation -61.441 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -89.647 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.804 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -56.638 kcal (6) G-S(sol) free energy of system = (1) + (5) -84.843 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.34 seconds