Wall clock time and date at job start Mon Mar 30 2020 06:58:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.53002 * 109.47361 * 2 1 4 4 C 1.52997 * 109.47005 * 239.99551 * 2 1 3 5 5 C 1.53002 * 109.47635 * 294.13962 * 4 2 1 6 6 H 1.08998 * 109.46721 * 55.24252 * 5 4 2 7 7 C 1.52995 * 109.47028 * 175.24575 * 5 4 2 8 8 O 1.45198 * 109.46849 * 295.24682 * 5 4 2 9 9 C 1.34641 * 117.00064 * 150.00138 * 8 5 4 10 10 O 1.21514 * 119.99757 * 359.97438 * 9 8 5 11 11 N 1.34772 * 120.00318 * 180.02562 * 9 8 5 12 12 C 1.47067 * 136.05732 * 359.62059 * 11 9 8 13 13 C 1.53754 * 87.88870 * 152.96865 * 12 11 9 14 14 C 1.50698 * 114.27005 * 139.79472 * 13 12 11 15 15 H 1.08002 * 119.99764 * 266.47984 * 14 13 12 16 16 C 1.37878 * 120.00090 * 86.47048 * 14 13 12 17 17 N 1.31510 * 119.99926 * 0.02562 * 16 14 13 18 18 Si 1.86797 * 120.00013 * 180.02562 * 16 14 13 19 19 H 1.48507 * 109.47061 * 60.00024 * 18 16 14 20 20 H 1.48501 * 109.47128 * 180.02562 * 18 16 14 21 21 H 1.48501 * 109.47037 * 300.00569 * 18 16 14 22 22 C 1.47064 * 136.05730 * 179.97438 * 11 9 8 23 23 H 1.09004 * 109.47517 * 179.97438 * 1 2 3 24 24 H 1.09003 * 109.47422 * 300.00639 * 1 2 3 25 25 H 1.09011 * 109.47087 * 60.00124 * 1 2 3 26 26 H 1.09004 * 109.46655 * 120.00394 * 2 1 3 27 27 H 1.09003 * 109.46442 * 299.54273 * 3 2 1 28 28 H 1.08992 * 109.46792 * 59.54106 * 3 2 1 29 29 H 1.08995 * 109.46824 * 179.54548 * 3 2 1 30 30 H 1.09004 * 109.47475 * 54.14292 * 4 2 1 31 31 H 1.09005 * 109.47214 * 174.13927 * 4 2 1 32 32 H 1.08998 * 109.47587 * 299.99626 * 7 5 4 33 33 H 1.08998 * 109.47634 * 60.00236 * 7 5 4 34 34 H 1.09007 * 109.47058 * 180.02562 * 7 5 4 35 35 H 1.09005 * 113.46990 * 267.70232 * 12 11 9 36 36 H 1.09007 * 113.46827 * 38.13872 * 12 11 9 37 37 H 1.09005 * 114.39160 * 272.68012 * 13 12 11 38 38 H 0.97002 * 120.00229 * 179.97438 * 17 16 14 39 39 H 1.08994 * 113.46863 * 321.85676 * 22 11 9 40 40 H 1.08997 * 113.47247 * 92.24456 * 22 11 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0399 -0.7213 -1.2492 5 6 1.6538 -2.2001 -1.1777 6 1 0.5763 -2.2879 -1.0387 7 6 2.0588 -2.8964 -2.4785 8 8 2.3384 -2.8256 -0.0604 9 6 1.7150 -3.8582 0.5379 10 8 0.6284 -4.2262 0.1376 11 7 2.2958 -4.4829 1.5814 12 6 3.5546 -4.3474 2.3296 13 6 2.8313 -4.9513 3.5445 14 6 3.6623 -5.9257 4.3388 15 1 3.6050 -6.9831 4.1262 16 6 4.4960 -5.4674 5.3368 17 7 4.5656 -4.1800 5.5958 18 14 5.5267 -6.6752 6.3208 19 1 6.4345 -7.4121 5.4052 20 1 6.3309 -5.9353 7.3263 21 1 4.6336 -7.6385 7.0135 22 6 1.9523 -5.6040 2.4690 23 1 -0.3634 -1.0277 -0.0005 24 1 -0.3634 0.5139 0.8899 25 1 -0.3634 0.5139 -0.8901 26 1 1.8932 -0.5139 0.8900 27 1 1.6834 1.9539 -0.8941 28 1 1.6700 1.9586 0.8858 29 1 3.1300 1.4424 0.0082 30 1 1.5935 -0.2717 -2.1361 31 1 3.1249 -0.6314 -1.3032 32 1 1.5448 -2.4269 -3.3172 33 1 3.1363 -2.8086 -2.6174 34 1 1.7832 -3.9498 -2.4277 35 1 4.3577 -4.9765 1.9457 36 1 3.8630 -3.3122 2.4765 37 1 2.3100 -4.2231 4.1659 38 1 5.1518 -3.8575 6.2982 39 1 0.8958 -5.6394 2.7347 40 1 2.3317 -6.5649 2.1214 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000849433236.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:58:26 Heat of formation + Delta-G solvation = -69.413879 kcal Electronic energy + Delta-G solvation = -19469.358920 eV Core-core repulsion = 16477.871369 eV Total energy + Delta-G solvation = -2991.487551 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 255.162 amu Computer time = 0.29 seconds Orbital eigenvalues (eV) -40.06214 -38.39374 -36.73714 -35.19483 -32.72960 -31.89935 -29.08714 -27.21266 -26.72280 -25.27744 -24.96072 -22.12579 -20.73838 -19.88149 -19.16615 -17.35919 -16.72890 -16.32869 -15.55918 -15.21212 -14.64464 -14.46355 -14.31282 -13.60632 -13.41895 -12.99208 -12.64113 -12.53785 -12.28397 -12.25697 -12.01714 -11.77871 -11.53766 -11.38783 -11.28167 -10.96406 -10.86310 -10.81807 -10.63429 -10.39143 -10.31556 -10.15942 -9.95024 -9.30284 -9.14788 -8.59388 -7.94505 -6.18470 -4.24703 2.61325 3.25822 3.31363 3.33359 3.44751 4.31479 4.48424 4.62410 4.83881 4.92585 5.11007 5.21746 5.25128 5.31092 5.52938 5.58761 5.65186 5.71841 5.77548 5.84822 5.92800 5.96991 6.01055 6.11667 6.14180 6.20093 6.22043 6.31598 6.37923 6.41051 6.55277 6.63277 6.81279 6.99148 7.53798 7.78911 8.15995 8.53236 8.78961 8.89728 9.42102 10.91299 Molecular weight = 255.16amu Principal moments of inertia in cm(-1) A = 0.026551 B = 0.004743 C = 0.004345 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1054.336425 B = 5902.537307 C = 6442.060188 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C -0.102 4.102 3 C -0.144 4.144 4 C -0.110 4.110 5 C 0.100 3.900 6 H 0.087 0.913 7 C -0.169 4.169 8 O -0.361 6.361 9 C 0.666 3.334 10 O -0.596 6.596 11 N -0.632 5.632 12 C 0.104 3.896 13 C 0.036 3.964 14 C -0.519 4.519 15 H 0.064 0.936 16 C 0.069 3.931 17 N -0.885 5.885 18 Si 0.897 3.103 19 H -0.275 1.275 20 H -0.287 1.287 21 H -0.275 1.275 22 C 0.124 3.876 23 H 0.057 0.943 24 H 0.054 0.946 25 H 0.052 0.948 26 H 0.079 0.921 27 H 0.051 0.949 28 H 0.054 0.946 29 H 0.055 0.945 30 H 0.080 0.920 31 H 0.073 0.927 32 H 0.070 0.930 33 H 0.063 0.937 34 H 0.062 0.938 35 H 0.074 0.926 36 H 0.062 0.938 37 H 0.071 0.929 38 H 0.265 0.735 39 H 0.060 0.940 40 H 0.076 0.924 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.315 7.409 -11.439 14.026 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.120 4.120 3 C -0.201 4.201 4 C -0.147 4.147 5 C 0.044 3.956 6 H 0.105 0.895 7 C -0.227 4.227 8 O -0.276 6.276 9 C 0.422 3.578 10 O -0.488 6.488 11 N -0.373 5.373 12 C -0.018 4.018 13 C 0.017 3.983 14 C -0.557 4.557 15 H 0.082 0.918 16 C -0.134 4.134 17 N -0.521 5.521 18 Si 0.724 3.276 19 H -0.200 1.200 20 H -0.212 1.212 21 H -0.200 1.200 22 C 0.003 3.997 23 H 0.076 0.924 24 H 0.073 0.927 25 H 0.071 0.929 26 H 0.097 0.903 27 H 0.070 0.930 28 H 0.073 0.927 29 H 0.074 0.926 30 H 0.099 0.901 31 H 0.092 0.908 32 H 0.089 0.911 33 H 0.082 0.918 34 H 0.081 0.919 35 H 0.092 0.908 36 H 0.080 0.920 37 H 0.089 0.911 38 H 0.075 0.925 39 H 0.079 0.921 40 H 0.094 0.906 Dipole moment (debyes) X Y Z Total from point charges -3.651 7.609 -11.675 14.406 hybrid contribution 0.608 -0.575 0.340 0.903 sum -3.042 7.035 -11.335 13.683 Atomic orbital electron populations 1.21918 0.95371 1.02029 1.01488 1.21126 0.95805 0.96151 0.98937 1.21812 1.01034 0.95832 1.01469 1.21799 1.02262 0.92125 0.98542 1.22646 0.97947 0.91546 0.83456 0.89479 1.22204 1.02314 1.01653 0.96490 1.86333 1.49682 1.45475 1.46077 1.17554 0.82359 0.79233 0.78646 1.90891 1.21994 1.69017 1.66912 1.48767 1.24413 1.34947 1.29160 1.23679 0.86336 1.01132 0.90652 1.20416 0.92548 0.95449 0.89936 1.20839 1.24312 0.93094 1.17447 0.91756 1.25026 0.96677 0.95236 0.96510 1.69946 1.37847 1.12898 1.31410 0.86575 0.80224 0.80983 0.79771 1.20036 1.21211 1.20012 1.23400 1.00458 0.88696 0.87137 0.92397 0.92653 0.92890 0.90298 0.92986 0.92674 0.92622 0.90113 0.90782 0.91119 0.91824 0.91875 0.90830 0.91976 0.91137 0.92516 0.92145 0.90617 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.77 8.97 37.16 0.33 -1.43 16 2 C -0.10 -1.25 2.87 -90.62 -0.26 -1.51 16 3 C -0.14 -1.47 9.19 37.16 0.34 -1.13 16 4 C -0.11 -1.28 4.39 -26.73 -0.12 -1.40 16 5 C 0.10 1.46 2.44 -26.73 -0.07 1.40 16 6 H 0.09 1.37 5.40 -51.93 -0.28 1.09 16 7 C -0.17 -2.14 9.55 37.16 0.35 -1.78 16 8 O -0.36 -6.75 9.34 -40.33 -0.38 -7.12 16 9 C 0.67 14.26 8.93 54.05 0.48 14.74 16 10 O -0.60 -13.70 16.38 -19.28 -0.32 -14.02 16 11 N -0.63 -13.74 3.69 -190.94 -0.70 -14.44 16 12 C 0.10 2.31 8.23 -8.37 -0.07 2.24 16 13 C 0.04 0.85 3.79 -91.13 -0.35 0.50 16 14 C -0.52 -13.14 8.83 -34.44 -0.30 -13.45 16 15 H 0.06 1.58 7.81 -52.49 -0.41 1.17 16 16 C 0.07 1.80 5.46 -17.82 -0.10 1.70 16 17 N -0.88 -24.12 13.26 55.43 0.74 -23.38 16 18 Si 0.90 19.96 29.54 -169.99 -5.02 14.94 16 19 H -0.27 -6.04 7.11 56.52 0.40 -5.64 16 20 H -0.29 -6.38 7.11 56.52 0.40 -5.98 16 21 H -0.27 -6.05 7.11 56.52 0.40 -5.65 16 22 C 0.12 2.61 8.17 -8.52 -0.07 2.54 16 23 H 0.06 0.78 6.50 -51.93 -0.34 0.44 16 24 H 0.05 0.62 8.14 -51.93 -0.42 0.20 16 25 H 0.05 0.52 8.14 -51.92 -0.42 0.10 16 26 H 0.08 1.19 7.67 -51.93 -0.40 0.79 16 27 H 0.05 0.46 8.14 -51.93 -0.42 0.03 16 28 H 0.05 0.55 8.14 -51.93 -0.42 0.13 16 29 H 0.05 0.56 8.14 -51.93 -0.42 0.14 16 30 H 0.08 0.75 8.14 -51.93 -0.42 0.33 16 31 H 0.07 0.85 8.14 -51.93 -0.42 0.43 16 32 H 0.07 0.70 8.14 -51.93 -0.42 0.27 16 33 H 0.06 0.76 8.14 -51.93 -0.42 0.33 16 34 H 0.06 0.91 8.14 -51.93 -0.42 0.48 16 35 H 0.07 1.59 8.10 -51.93 -0.42 1.17 16 36 H 0.06 1.40 8.14 -51.93 -0.42 0.98 16 37 H 0.07 1.81 8.11 -51.93 -0.42 1.39 16 38 H 0.27 6.90 8.31 -40.82 -0.34 6.56 16 39 H 0.06 1.23 8.14 -51.93 -0.42 0.80 16 40 H 0.08 1.51 8.10 -51.93 -0.42 1.09 16 LS Contribution 332.05 15.07 5.00 5.00 Total: -1.00 -28.55 332.05 -7.39 -35.94 By element: Atomic # 1 Polarization: 7.56 SS G_CDS: -6.90 Total: 0.66 kcal Atomic # 6 Polarization: 2.24 SS G_CDS: 0.18 Total: 2.42 kcal Atomic # 7 Polarization: -37.86 SS G_CDS: 0.03 Total: -37.83 kcal Atomic # 8 Polarization: -20.45 SS G_CDS: -0.69 Total: -21.14 kcal Atomic # 14 Polarization: 19.96 SS G_CDS: -5.02 Total: 14.94 kcal Total LS contribution 5.00 Total: 5.00 kcal Total: -28.55 -7.39 -35.94 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000849433236.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -33.471 kcal (2) G-P(sol) polarization free energy of solvation -28.552 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -62.024 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.390 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.943 kcal (6) G-S(sol) free energy of system = (1) + (5) -69.414 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.29 seconds