Wall clock time and date at job start Mon Mar 30 2020 06:58:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.53002 * 109.47361 * 2 1 4 4 C 1.52997 * 109.47005 * 239.99551 * 2 1 3 5 5 C 1.53002 * 109.47635 * 294.13962 * 4 2 1 6 6 H 1.08998 * 109.46721 * 55.24252 * 5 4 2 7 7 C 1.52995 * 109.47028 * 175.24575 * 5 4 2 8 8 O 1.45198 * 109.46849 * 295.24682 * 5 4 2 9 9 C 1.34641 * 117.00064 * 150.00138 * 8 5 4 10 10 O 1.21514 * 119.99757 * 359.97438 * 9 8 5 11 11 N 1.34772 * 120.00318 * 180.02562 * 9 8 5 12 12 C 1.47067 * 136.05732 * 359.62059 * 11 9 8 13 13 C 1.53754 * 87.88870 * 152.96865 * 12 11 9 14 14 C 1.50698 * 114.27005 * 139.79472 * 13 12 11 15 15 H 1.08002 * 119.99764 * 266.47984 * 14 13 12 16 16 C 1.37878 * 120.00090 * 86.47048 * 14 13 12 17 17 N 1.31510 * 119.99926 * 0.02562 * 16 14 13 18 18 Si 1.86797 * 120.00013 * 180.02562 * 16 14 13 19 19 H 1.48507 * 109.47061 * 60.00024 * 18 16 14 20 20 H 1.48501 * 109.47128 * 180.02562 * 18 16 14 21 21 H 1.48501 * 109.47037 * 300.00569 * 18 16 14 22 22 C 1.47064 * 136.05730 * 179.97438 * 11 9 8 23 23 H 1.09004 * 109.47517 * 179.97438 * 1 2 3 24 24 H 1.09003 * 109.47422 * 300.00639 * 1 2 3 25 25 H 1.09011 * 109.47087 * 60.00124 * 1 2 3 26 26 H 1.09004 * 109.46655 * 120.00394 * 2 1 3 27 27 H 1.09003 * 109.46442 * 299.54273 * 3 2 1 28 28 H 1.08992 * 109.46792 * 59.54106 * 3 2 1 29 29 H 1.08995 * 109.46824 * 179.54548 * 3 2 1 30 30 H 1.09004 * 109.47475 * 54.14292 * 4 2 1 31 31 H 1.09005 * 109.47214 * 174.13927 * 4 2 1 32 32 H 1.08998 * 109.47587 * 299.99626 * 7 5 4 33 33 H 1.08998 * 109.47634 * 60.00236 * 7 5 4 34 34 H 1.09007 * 109.47058 * 180.02562 * 7 5 4 35 35 H 1.09005 * 113.46990 * 267.70232 * 12 11 9 36 36 H 1.09007 * 113.46827 * 38.13872 * 12 11 9 37 37 H 1.09005 * 114.39160 * 272.68012 * 13 12 11 38 38 H 0.97002 * 120.00229 * 179.97438 * 17 16 14 39 39 H 1.08994 * 113.46863 * 321.85676 * 22 11 9 40 40 H 1.08997 * 113.47247 * 92.24456 * 22 11 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0399 -0.7213 -1.2492 5 6 1.6538 -2.2001 -1.1777 6 1 0.5763 -2.2879 -1.0387 7 6 2.0588 -2.8964 -2.4785 8 8 2.3384 -2.8256 -0.0604 9 6 1.7150 -3.8582 0.5379 10 8 0.6284 -4.2262 0.1376 11 7 2.2958 -4.4829 1.5814 12 6 3.5546 -4.3474 2.3296 13 6 2.8313 -4.9513 3.5445 14 6 3.6623 -5.9257 4.3388 15 1 3.6050 -6.9831 4.1262 16 6 4.4960 -5.4674 5.3368 17 7 4.5656 -4.1800 5.5958 18 14 5.5267 -6.6752 6.3208 19 1 6.4345 -7.4121 5.4052 20 1 6.3309 -5.9353 7.3263 21 1 4.6336 -7.6385 7.0135 22 6 1.9523 -5.6040 2.4690 23 1 -0.3634 -1.0277 -0.0005 24 1 -0.3634 0.5139 0.8899 25 1 -0.3634 0.5139 -0.8901 26 1 1.8932 -0.5139 0.8900 27 1 1.6834 1.9539 -0.8941 28 1 1.6700 1.9586 0.8858 29 1 3.1300 1.4424 0.0082 30 1 1.5935 -0.2717 -2.1361 31 1 3.1249 -0.6314 -1.3032 32 1 1.5448 -2.4269 -3.3172 33 1 3.1363 -2.8086 -2.6174 34 1 1.7832 -3.9498 -2.4277 35 1 4.3577 -4.9765 1.9457 36 1 3.8630 -3.3122 2.4765 37 1 2.3100 -4.2231 4.1659 38 1 5.1518 -3.8575 6.2982 39 1 0.8958 -5.6394 2.7347 40 1 2.3317 -6.5649 2.1214 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000849433236.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:58:26 Heat of formation + Delta-G solvation = -84.843902 kcal Electronic energy + Delta-G solvation = -19470.028016 eV Core-core repulsion = 16477.871369 eV Total energy + Delta-G solvation = -2992.156647 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 255.162 amu Computer time = 0.32 seconds Orbital eigenvalues (eV) -41.66689 -40.00800 -38.08768 -36.57507 -34.67511 -33.06484 -30.87544 -28.09447 -27.69429 -27.15749 -26.74666 -23.56271 -22.17978 -21.02046 -20.74543 -19.10817 -18.55741 -17.92891 -17.17634 -16.48617 -16.23212 -15.91126 -15.57229 -15.15008 -14.65959 -14.30361 -14.01280 -13.89163 -13.67930 -13.31164 -13.20240 -13.11798 -13.07733 -12.76362 -12.74003 -12.60513 -12.38344 -12.18742 -11.99483 -11.84649 -11.58678 -11.41342 -11.24000 -11.13085 -11.05849 -10.55152 -9.71049 -8.16137 -6.28297 1.07624 1.51332 1.51889 1.59637 1.74900 2.46646 2.94147 3.14755 3.60381 3.82872 3.95578 4.12300 4.15485 4.22535 4.32491 4.33550 4.43315 4.57419 4.64366 4.67251 4.73386 4.76606 4.79593 4.82774 4.93090 4.96501 4.98234 4.99104 5.03849 5.14528 5.28435 5.37616 5.45057 5.52223 5.57392 5.80586 6.20687 6.79395 6.81246 7.22110 7.42200 8.94055 Molecular weight = 255.16amu Principal moments of inertia in cm(-1) A = 0.026551 B = 0.004743 C = 0.004345 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1054.336425 B = 5902.537307 C = 6442.060188 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.105 4.105 3 C -0.139 4.139 4 C -0.102 4.102 5 C 0.088 3.912 6 H 0.074 0.926 7 C -0.164 4.164 8 O -0.367 6.367 9 C 0.666 3.334 10 O -0.615 6.615 11 N -0.638 5.638 12 C 0.117 3.883 13 C 0.027 3.973 14 C -0.528 4.528 15 H 0.073 0.927 16 C 0.021 3.979 17 N -0.920 5.920 18 Si 0.962 3.038 19 H -0.267 1.267 20 H -0.288 1.288 21 H -0.269 1.269 22 C 0.132 3.868 23 H 0.034 0.966 24 H 0.054 0.946 25 H 0.078 0.922 26 H 0.039 0.961 27 H 0.074 0.926 28 H 0.053 0.947 29 H 0.055 0.945 30 H 0.116 0.884 31 H 0.077 0.923 32 H 0.104 0.896 33 H 0.071 0.929 34 H 0.040 0.960 35 H 0.082 0.918 36 H 0.050 0.950 37 H 0.041 0.959 38 H 0.265 0.735 39 H 0.065 0.935 40 H 0.093 0.907 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.927 7.603 -12.883 15.243 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.123 4.123 3 C -0.196 4.196 4 C -0.139 4.139 5 C 0.033 3.967 6 H 0.092 0.908 7 C -0.221 4.221 8 O -0.281 6.281 9 C 0.423 3.577 10 O -0.509 6.509 11 N -0.379 5.379 12 C -0.005 4.005 13 C 0.007 3.993 14 C -0.566 4.566 15 H 0.091 0.909 16 C -0.180 4.180 17 N -0.558 5.558 18 Si 0.787 3.213 19 H -0.192 1.192 20 H -0.214 1.214 21 H -0.194 1.194 22 C 0.011 3.989 23 H 0.053 0.947 24 H 0.073 0.927 25 H 0.097 0.903 26 H 0.058 0.942 27 H 0.093 0.907 28 H 0.072 0.928 29 H 0.074 0.926 30 H 0.134 0.866 31 H 0.096 0.904 32 H 0.123 0.877 33 H 0.090 0.910 34 H 0.059 0.941 35 H 0.100 0.900 36 H 0.069 0.931 37 H 0.059 0.941 38 H 0.074 0.926 39 H 0.084 0.916 40 H 0.111 0.889 Dipole moment (debyes) X Y Z Total from point charges -3.267 7.805 -13.138 15.627 hybrid contribution 0.424 -0.573 0.738 1.026 sum -2.843 7.232 -12.401 14.634 Atomic orbital electron populations 1.21893 0.94987 1.00850 1.02768 1.21122 0.96173 0.97327 0.97719 1.21769 1.01020 0.94283 1.02566 1.21850 1.02753 0.89826 0.99514 1.23120 0.97157 0.93401 0.83015 0.90803 1.22198 1.03252 1.00313 0.96349 1.86345 1.50070 1.44451 1.47270 1.17601 0.82065 0.79543 0.78515 1.90866 1.22751 1.69754 1.67492 1.48757 1.24225 1.35307 1.29621 1.23456 0.86577 1.00429 0.90063 1.20275 0.93339 0.95273 0.90392 1.21165 1.24139 0.93699 1.17596 0.90922 1.25805 0.97865 0.96687 0.97598 1.70070 1.38852 1.14706 1.32180 0.85550 0.78664 0.78800 0.78289 1.19157 1.21416 1.19412 1.23317 1.00397 0.89096 0.86041 0.94735 0.92711 0.90298 0.94207 0.90712 0.92790 0.92615 0.86582 0.90385 0.87717 0.90985 0.94097 0.89998 0.93097 0.94096 0.92613 0.91606 0.88866 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.33 8.97 71.98 0.65 -2.69 16 2 C -0.10 -2.49 2.87 -10.79 -0.03 -2.52 16 3 C -0.14 -2.58 9.19 71.98 0.66 -1.92 16 4 C -0.10 -2.18 4.39 30.59 0.13 -2.04 16 5 C 0.09 2.49 2.44 30.59 0.07 2.57 16 6 H 0.07 2.31 5.40 -2.39 -0.01 2.30 16 7 C -0.16 -3.83 9.55 71.98 0.69 -3.15 16 8 O -0.37 -13.80 9.34 -55.50 -0.52 -14.32 16 9 C 0.67 28.82 8.93 129.79 1.16 29.98 16 10 O -0.61 -28.52 16.38 19.80 0.32 -28.20 16 11 N -0.64 -27.96 3.69 -988.41 -3.64 -31.60 16 12 C 0.12 5.25 8.23 83.26 0.69 5.94 16 13 C 0.03 1.28 3.79 -11.13 -0.04 1.24 16 14 C -0.53 -26.67 8.83 25.60 0.23 -26.44 16 15 H 0.07 3.48 7.81 -2.91 -0.02 3.46 16 16 C 0.02 1.08 5.46 84.66 0.46 1.54 16 17 N -0.92 -50.94 13.26 21.45 0.28 -50.65 16 18 Si 0.96 40.60 29.54 68.60 2.03 42.63 16 19 H -0.27 -10.84 7.11 99.48 0.71 -10.13 16 20 H -0.29 -12.17 7.11 99.48 0.71 -11.46 16 21 H -0.27 -11.04 7.11 99.48 0.71 -10.33 16 22 C 0.13 5.55 8.17 83.17 0.68 6.23 16 23 H 0.03 0.93 6.50 -2.38 -0.02 0.91 16 24 H 0.05 1.21 8.14 -2.39 -0.02 1.19 16 25 H 0.08 1.35 8.14 -2.38 -0.02 1.33 16 26 H 0.04 1.24 7.67 -2.39 -0.02 1.22 16 27 H 0.07 1.06 8.14 -2.39 -0.02 1.04 16 28 H 0.05 1.01 8.14 -2.39 -0.02 0.99 16 29 H 0.05 1.03 8.14 -2.39 -0.02 1.01 16 30 H 0.12 1.70 8.14 -2.39 -0.02 1.68 16 31 H 0.08 1.63 8.14 -2.38 -0.02 1.61 16 32 H 0.10 1.72 8.14 -2.39 -0.02 1.70 16 33 H 0.07 1.56 8.14 -2.39 -0.02 1.54 16 34 H 0.04 1.13 8.14 -2.38 -0.02 1.11 16 35 H 0.08 3.52 8.10 -2.38 -0.02 3.50 16 36 H 0.05 2.36 8.14 -2.38 -0.02 2.34 16 37 H 0.04 2.19 8.11 -2.38 -0.02 2.17 16 38 H 0.26 13.98 8.31 -92.71 -0.77 13.21 16 39 H 0.07 2.67 8.14 -2.39 -0.02 2.65 16 40 H 0.09 3.60 8.10 -2.39 -0.02 3.58 16 Total: -1.00 -61.58 332.05 4.81 -56.78 By element: Atomic # 1 Polarization: 15.65 SS G_CDS: 0.99 Total: 16.64 kcal Atomic # 6 Polarization: 3.39 SS G_CDS: 5.34 Total: 8.73 kcal Atomic # 7 Polarization: -78.90 SS G_CDS: -3.36 Total: -82.26 kcal Atomic # 8 Polarization: -42.32 SS G_CDS: -0.19 Total: -42.52 kcal Atomic # 14 Polarization: 40.60 SS G_CDS: 2.03 Total: 42.63 kcal Total: -61.58 4.81 -56.78 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000849433236.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -28.068 kcal (2) G-P(sol) polarization free energy of solvation -61.581 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -89.649 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.805 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -56.776 kcal (6) G-S(sol) free energy of system = (1) + (5) -84.844 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.32 seconds