Wall clock time and date at job start Mon Mar 30 2020 06:27:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.53008 * 109.47280 * 2 1 4 4 C 1.52999 * 109.47081 * 119.99735 * 2 1 3 5 5 C 1.52999 * 109.46935 * 174.99943 * 4 2 1 6 6 O 1.42904 * 109.47209 * 180.02562 * 5 4 2 7 7 C 1.42898 * 114.00409 * 180.02562 * 6 5 4 8 8 C 1.52996 * 109.47390 * 180.02562 * 7 6 5 9 9 N 1.46892 * 109.47352 * 64.99143 * 8 7 6 10 10 C 1.46899 * 111.00265 * 190.00069 * 9 8 7 11 11 C 1.50699 * 109.47378 * 159.88057 * 10 9 8 12 12 H 1.07999 * 119.99794 * 354.19460 * 11 10 9 13 13 C 1.37880 * 120.00237 * 174.20338 * 11 10 9 14 14 N 1.31515 * 119.99602 * 359.97438 * 13 11 10 15 15 Si 1.86798 * 119.99774 * 179.97438 * 13 11 10 16 16 H 1.48508 * 109.47012 * 90.00021 * 15 13 11 17 17 H 1.48506 * 109.46911 * 209.99462 * 15 13 11 18 18 H 1.48495 * 109.47527 * 329.99550 * 15 13 11 19 19 C 1.46907 * 110.99670 * 66.05301 * 9 8 7 20 20 C 1.53007 * 117.49338 * 261.94425 * 19 9 8 21 21 C 1.53002 * 117.50053 * 193.28742 * 19 9 8 22 22 H 1.09005 * 109.47234 * 300.00403 * 1 2 3 23 23 H 1.09002 * 109.46804 * 59.99680 * 1 2 3 24 24 H 1.08997 * 109.47076 * 180.02562 * 1 2 3 25 25 H 1.08996 * 109.47529 * 240.00088 * 2 1 3 26 26 H 1.09001 * 109.46591 * 300.00189 * 3 2 1 27 27 H 1.08996 * 109.46767 * 59.99621 * 3 2 1 28 28 H 1.08998 * 109.47532 * 179.97438 * 3 2 1 29 29 H 1.08995 * 109.46716 * 55.00409 * 4 2 1 30 30 H 1.09003 * 109.47193 * 294.99861 * 4 2 1 31 31 H 1.09007 * 109.47263 * 60.00306 * 5 4 2 32 32 H 1.09000 * 109.47840 * 300.00007 * 5 4 2 33 33 H 1.08998 * 109.47158 * 59.99426 * 7 6 5 34 34 H 1.09002 * 109.46807 * 299.99858 * 7 6 5 35 35 H 1.09005 * 109.47337 * 185.00136 * 8 7 6 36 36 H 1.09007 * 109.46674 * 304.99085 * 8 7 6 37 37 H 1.09001 * 109.47368 * 279.87917 * 10 9 8 38 38 H 1.08999 * 109.47189 * 39.87585 * 10 9 8 39 39 H 0.97001 * 119.99173 * 180.02562 * 14 13 11 40 40 H 1.08995 * 115.55031 * 47.61002 * 19 9 8 41 41 H 1.08994 * 117.50065 * 359.97438 * 20 19 9 42 42 H 1.09000 * 117.49367 * 145.02282 * 20 19 9 43 43 H 1.08995 * 117.49621 * 214.98008 * 21 19 9 44 44 H 1.09006 * 117.49277 * 359.97060 * 21 19 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 6 2.0400 -0.7212 1.2493 5 6 3.5648 -0.8310 1.1880 6 8 4.0411 -1.5051 2.3545 7 6 5.4610 -1.6604 2.3970 8 6 5.8559 -2.3915 3.6817 9 7 5.3161 -3.7573 3.6536 10 6 5.4682 -4.4106 4.9605 11 6 4.5046 -5.5649 5.0604 12 1 3.7812 -5.7338 4.2764 13 6 4.5462 -6.4053 6.1527 14 7 5.4273 -6.1997 7.1072 15 14 3.3512 -7.8356 6.2768 16 1 3.9498 -9.0373 5.6418 17 1 3.0671 -8.1207 7.7062 18 1 2.0867 -7.4861 5.5810 19 6 5.9481 -4.5514 2.5914 20 6 5.1929 -4.6888 1.2678 21 6 5.2929 -5.8832 2.2200 22 1 -0.3634 0.5139 0.8900 23 1 -0.3633 0.5139 -0.8900 24 1 -0.3633 -1.0276 0.0005 25 1 1.8934 -0.5138 -0.8899 26 1 1.6766 1.9563 -0.8900 27 1 1.6767 1.9563 0.8899 28 1 3.1300 1.4426 0.0005 29 1 1.6054 -1.7197 1.2951 30 1 1.7516 -0.1582 2.1370 31 1 3.9995 0.1676 1.1420 32 1 3.8533 -1.3939 0.3003 33 1 5.9347 -0.6790 2.3768 34 1 5.7891 -2.2401 1.5342 35 1 6.9425 -2.4316 3.7577 36 1 5.4511 -1.8584 4.5421 37 1 6.4886 -4.7791 5.0659 38 1 5.2578 -3.6921 5.7526 39 1 5.4568 -6.7912 7.8754 40 1 7.0357 -4.4958 2.5469 41 1 4.2271 -4.1905 1.1854 42 1 5.7839 -4.7242 0.3526 43 1 5.9496 -6.7037 1.9309 44 1 4.3931 -6.1704 2.7642 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000042549381.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:27:56 Heat of formation + Delta-G solvation = -33.910263 kcal Electronic energy + Delta-G solvation = -19574.333165 eV Core-core repulsion = 16720.218261 eV Total energy + Delta-G solvation = -2854.114904 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 255.194 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -38.35303 -37.35391 -35.97587 -33.55770 -32.43269 -29.96553 -28.32422 -27.31956 -25.87949 -22.96048 -22.19388 -21.91315 -21.52255 -20.01531 -19.28035 -16.53805 -16.27512 -15.99534 -15.16063 -14.81665 -14.56048 -14.34846 -14.21352 -13.77875 -13.49594 -13.08205 -12.46013 -12.37807 -12.23654 -12.11237 -11.77088 -11.62891 -11.27201 -11.17135 -10.97411 -10.84769 -10.73790 -10.66240 -10.62328 -10.56499 -10.37173 -9.85940 -9.48961 -9.16321 -9.04976 -9.03581 -8.32530 -7.15446 -5.93710 -3.92725 3.36628 3.42791 3.47442 3.95903 4.47849 4.64968 4.76889 4.81148 4.85735 4.95000 5.24374 5.40110 5.41675 5.45974 5.52348 5.55536 5.60785 5.67102 5.70331 5.72028 5.75250 5.79517 5.84837 5.91155 5.96050 6.08499 6.10186 6.24211 6.26832 6.29591 6.33092 6.42774 6.49839 6.79960 7.10181 7.29623 7.45123 7.65061 7.94660 8.21393 8.31490 8.64718 9.13833 9.69506 11.17087 Molecular weight = 255.19amu Principal moments of inertia in cm(-1) A = 0.021691 B = 0.004585 C = 0.004287 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1290.537708 B = 6105.445958 C = 6529.313197 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.094 4.094 3 C -0.150 4.150 4 C -0.113 4.113 5 C 0.061 3.939 6 O -0.364 6.364 7 C 0.072 3.928 8 C 0.059 3.941 9 N -0.500 5.500 10 C 0.195 3.805 11 C -0.493 4.493 12 H 0.067 0.933 13 C 0.052 3.948 14 N -0.903 5.903 15 Si 0.893 3.107 16 H -0.282 1.282 17 H -0.288 1.288 18 H -0.273 1.273 19 C 0.024 3.976 20 C -0.185 4.185 21 C -0.155 4.155 22 H 0.055 0.945 23 H 0.052 0.948 24 H 0.056 0.944 25 H 0.069 0.931 26 H 0.051 0.949 27 H 0.055 0.945 28 H 0.055 0.945 29 H 0.072 0.928 30 H 0.069 0.931 31 H 0.040 0.960 32 H 0.041 0.959 33 H 0.037 0.963 34 H 0.049 0.951 35 H 0.035 0.965 36 H 0.076 0.924 37 H -0.004 1.004 38 H 0.024 0.976 39 H 0.259 0.741 40 H 0.066 0.934 41 H 0.094 0.906 42 H 0.075 0.925 43 H 0.078 0.922 44 H 0.117 0.883 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.236 11.704 -14.289 18.752 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.113 4.113 3 C -0.208 4.208 4 C -0.151 4.151 5 C -0.017 4.017 6 O -0.283 6.283 7 C -0.005 4.005 8 C -0.069 4.069 9 N -0.224 5.224 10 C 0.070 3.930 11 C -0.531 4.531 12 H 0.085 0.915 13 C -0.148 4.148 14 N -0.543 5.543 15 Si 0.721 3.279 16 H -0.208 1.208 17 H -0.214 1.214 18 H -0.198 1.198 19 C -0.085 4.085 20 C -0.223 4.223 21 C -0.192 4.192 22 H 0.074 0.926 23 H 0.071 0.929 24 H 0.075 0.925 25 H 0.087 0.913 26 H 0.071 0.929 27 H 0.074 0.926 28 H 0.074 0.926 29 H 0.091 0.909 30 H 0.088 0.912 31 H 0.058 0.942 32 H 0.059 0.941 33 H 0.055 0.945 34 H 0.067 0.933 35 H 0.053 0.947 36 H 0.095 0.905 37 H 0.014 0.986 38 H 0.042 0.958 39 H 0.069 0.931 40 H 0.083 0.917 41 H 0.112 0.888 42 H 0.094 0.906 43 H 0.097 0.903 44 H 0.135 0.865 Dipole moment (debyes) X Y Z Total from point charges -3.805 11.600 -14.046 18.611 hybrid contribution 0.613 -0.753 0.191 0.990 sum -3.192 10.847 -13.856 17.884 Atomic orbital electron populations 1.21823 0.95006 1.01949 1.01596 1.21053 0.95894 0.96167 0.98190 1.21922 1.01127 0.96088 1.01623 1.21546 0.94063 1.01600 0.97858 1.22470 0.94938 0.95385 0.88860 1.88058 1.21331 1.78102 1.40791 1.22530 0.81661 0.97346 0.99000 1.22037 0.96295 0.91778 0.96811 1.61879 1.54575 0.99527 1.06450 1.19722 0.95981 0.93842 0.83445 1.21232 1.16605 1.10237 1.05046 0.91460 1.24977 0.95943 0.98005 0.95865 1.69963 1.35750 1.38697 1.09901 0.86569 0.81571 0.82654 0.77083 1.20813 1.21400 1.19786 1.22073 0.93265 0.99495 0.93703 1.23036 1.02358 1.04362 0.92570 1.23099 1.04285 0.90390 1.01384 0.92596 0.92857 0.92483 0.91261 0.92940 0.92572 0.92560 0.90884 0.91231 0.94159 0.94120 0.94536 0.93291 0.94682 0.90527 0.98581 0.95778 0.93126 0.91696 0.88769 0.90632 0.90348 0.86472 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.27 9.19 37.16 0.34 -0.92 16 2 C -0.09 -0.89 2.92 -90.62 -0.26 -1.16 16 3 C -0.15 -1.27 8.95 37.16 0.33 -0.94 16 4 C -0.11 -1.35 5.05 -26.73 -0.14 -1.49 16 5 C 0.06 0.79 5.69 37.16 0.21 1.00 16 6 O -0.36 -6.25 10.29 -35.23 -0.36 -6.61 16 7 C 0.07 1.14 5.91 37.16 0.22 1.36 16 8 C 0.06 1.12 5.32 -3.83 -0.02 1.09 16 9 N -0.50 -11.10 4.52 -228.08 -1.03 -12.13 16 10 C 0.19 5.17 4.77 -4.98 -0.02 5.14 16 11 C -0.49 -13.90 7.82 -34.44 -0.27 -14.17 16 12 H 0.07 1.89 5.78 -52.49 -0.30 1.59 16 13 C 0.05 1.50 5.46 -17.82 -0.10 1.40 16 14 N -0.90 -27.17 13.29 55.43 0.74 -26.43 16 15 Si 0.89 21.94 29.54 -169.99 -5.02 16.92 16 16 H -0.28 -6.81 7.11 56.52 0.40 -6.41 16 17 H -0.29 -7.05 7.11 56.52 0.40 -6.64 16 18 H -0.27 -6.62 7.11 56.52 0.40 -6.21 16 19 C 0.02 0.48 4.18 -67.70 -0.28 0.20 16 20 C -0.19 -3.21 9.17 -26.69 -0.24 -3.46 16 21 C -0.15 -3.06 9.48 -26.69 -0.25 -3.31 16 22 H 0.05 0.48 8.14 -51.93 -0.42 0.06 16 23 H 0.05 0.40 8.14 -51.93 -0.42 -0.02 16 24 H 0.06 0.50 8.14 -51.93 -0.42 0.08 16 25 H 0.07 0.64 8.14 -51.93 -0.42 0.21 16 26 H 0.05 0.39 8.14 -51.93 -0.42 -0.03 16 27 H 0.06 0.48 8.14 -51.93 -0.42 0.05 16 28 H 0.06 0.48 6.56 -51.93 -0.34 0.13 16 29 H 0.07 0.96 8.14 -51.93 -0.42 0.54 16 30 H 0.07 0.87 8.14 -51.93 -0.42 0.44 16 31 H 0.04 0.47 6.56 -51.92 -0.34 0.13 16 32 H 0.04 0.51 8.14 -51.93 -0.42 0.09 16 33 H 0.04 0.49 8.14 -51.93 -0.42 0.07 16 34 H 0.05 0.76 6.29 -51.93 -0.33 0.43 16 35 H 0.04 0.62 8.12 -51.93 -0.42 0.20 16 36 H 0.08 1.48 7.83 -51.93 -0.41 1.08 16 37 H 0.00 -0.11 7.99 -51.93 -0.42 -0.52 16 38 H 0.02 0.68 7.73 -51.93 -0.40 0.28 16 39 H 0.26 7.40 8.31 -40.82 -0.34 7.06 16 40 H 0.07 1.26 8.14 -51.93 -0.42 0.84 16 41 H 0.09 1.71 8.14 -51.93 -0.42 1.29 16 42 H 0.08 1.12 8.14 -51.93 -0.42 0.69 16 43 H 0.08 1.41 8.14 -51.93 -0.42 0.99 16 44 H 0.12 2.62 5.44 -51.93 -0.28 2.34 16 LS Contribution 347.46 15.07 5.24 5.24 Total: -1.00 -30.29 347.46 -9.22 -39.51 By element: Atomic # 1 Polarization: 7.05 SS G_CDS: -8.29 Total: -1.24 kcal Atomic # 6 Polarization: -14.76 SS G_CDS: -0.49 Total: -15.25 kcal Atomic # 7 Polarization: -38.27 SS G_CDS: -0.29 Total: -38.56 kcal Atomic # 8 Polarization: -6.25 SS G_CDS: -0.36 Total: -6.61 kcal Atomic # 14 Polarization: 21.94 SS G_CDS: -5.02 Total: 16.92 kcal Total LS contribution 5.24 Total: 5.24 kcal Total: -30.29 -9.22 -39.51 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000042549381.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 5.600 kcal (2) G-P(sol) polarization free energy of solvation -30.292 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -24.692 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.218 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.510 kcal (6) G-S(sol) free energy of system = (1) + (5) -33.910 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds