Wall clock time and date at job start Mon Mar 30 2020 06:27:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.53008 * 109.47280 * 2 1 4 4 C 1.52999 * 109.47081 * 119.99735 * 2 1 3 5 5 C 1.52999 * 109.46935 * 174.99943 * 4 2 1 6 6 O 1.42904 * 109.47209 * 180.02562 * 5 4 2 7 7 C 1.42898 * 114.00409 * 180.02562 * 6 5 4 8 8 C 1.52996 * 109.47390 * 180.02562 * 7 6 5 9 9 N 1.46892 * 109.47352 * 64.99143 * 8 7 6 10 10 C 1.46899 * 111.00265 * 190.00069 * 9 8 7 11 11 C 1.50699 * 109.47378 * 159.88057 * 10 9 8 12 12 H 1.07999 * 119.99794 * 354.19460 * 11 10 9 13 13 C 1.37880 * 120.00237 * 174.20338 * 11 10 9 14 14 N 1.31515 * 119.99602 * 359.97438 * 13 11 10 15 15 Si 1.86798 * 119.99774 * 179.97438 * 13 11 10 16 16 H 1.48508 * 109.47012 * 90.00021 * 15 13 11 17 17 H 1.48506 * 109.46911 * 209.99462 * 15 13 11 18 18 H 1.48495 * 109.47527 * 329.99550 * 15 13 11 19 19 C 1.46907 * 110.99670 * 66.05301 * 9 8 7 20 20 C 1.53007 * 117.49338 * 261.94425 * 19 9 8 21 21 C 1.53002 * 117.50053 * 193.28742 * 19 9 8 22 22 H 1.09005 * 109.47234 * 300.00403 * 1 2 3 23 23 H 1.09002 * 109.46804 * 59.99680 * 1 2 3 24 24 H 1.08997 * 109.47076 * 180.02562 * 1 2 3 25 25 H 1.08996 * 109.47529 * 240.00088 * 2 1 3 26 26 H 1.09001 * 109.46591 * 300.00189 * 3 2 1 27 27 H 1.08996 * 109.46767 * 59.99621 * 3 2 1 28 28 H 1.08998 * 109.47532 * 179.97438 * 3 2 1 29 29 H 1.08995 * 109.46716 * 55.00409 * 4 2 1 30 30 H 1.09003 * 109.47193 * 294.99861 * 4 2 1 31 31 H 1.09007 * 109.47263 * 60.00306 * 5 4 2 32 32 H 1.09000 * 109.47840 * 300.00007 * 5 4 2 33 33 H 1.08998 * 109.47158 * 59.99426 * 7 6 5 34 34 H 1.09002 * 109.46807 * 299.99858 * 7 6 5 35 35 H 1.09005 * 109.47337 * 185.00136 * 8 7 6 36 36 H 1.09007 * 109.46674 * 304.99085 * 8 7 6 37 37 H 1.09001 * 109.47368 * 279.87917 * 10 9 8 38 38 H 1.08999 * 109.47189 * 39.87585 * 10 9 8 39 39 H 0.97001 * 119.99173 * 180.02562 * 14 13 11 40 40 H 1.08995 * 115.55031 * 47.61002 * 19 9 8 41 41 H 1.08994 * 117.50065 * 359.97438 * 20 19 9 42 42 H 1.09000 * 117.49367 * 145.02282 * 20 19 9 43 43 H 1.08995 * 117.49621 * 214.98008 * 21 19 9 44 44 H 1.09006 * 117.49277 * 359.97060 * 21 19 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 6 2.0400 -0.7212 1.2493 5 6 3.5648 -0.8310 1.1880 6 8 4.0411 -1.5051 2.3545 7 6 5.4610 -1.6604 2.3970 8 6 5.8559 -2.3915 3.6817 9 7 5.3161 -3.7573 3.6536 10 6 5.4682 -4.4106 4.9605 11 6 4.5046 -5.5649 5.0604 12 1 3.7812 -5.7338 4.2764 13 6 4.5462 -6.4053 6.1527 14 7 5.4273 -6.1997 7.1072 15 14 3.3512 -7.8356 6.2768 16 1 3.9498 -9.0373 5.6418 17 1 3.0671 -8.1207 7.7062 18 1 2.0867 -7.4861 5.5810 19 6 5.9481 -4.5514 2.5914 20 6 5.1929 -4.6888 1.2678 21 6 5.2929 -5.8832 2.2200 22 1 -0.3634 0.5139 0.8900 23 1 -0.3633 0.5139 -0.8900 24 1 -0.3633 -1.0276 0.0005 25 1 1.8934 -0.5138 -0.8899 26 1 1.6766 1.9563 -0.8900 27 1 1.6767 1.9563 0.8899 28 1 3.1300 1.4426 0.0005 29 1 1.6054 -1.7197 1.2951 30 1 1.7516 -0.1582 2.1370 31 1 3.9995 0.1676 1.1420 32 1 3.8533 -1.3939 0.3003 33 1 5.9347 -0.6790 2.3768 34 1 5.7891 -2.2401 1.5342 35 1 6.9425 -2.4316 3.7577 36 1 5.4511 -1.8584 4.5421 37 1 6.4886 -4.7791 5.0659 38 1 5.2578 -3.6921 5.7526 39 1 5.4568 -6.7912 7.8754 40 1 7.0357 -4.4958 2.5469 41 1 4.2271 -4.1905 1.1854 42 1 5.7839 -4.7242 0.3526 43 1 5.9496 -6.7037 1.9309 44 1 4.3931 -6.1704 2.7642 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000042549381.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:27:55 Heat of formation + Delta-G solvation = -51.964502 kcal Electronic energy + Delta-G solvation = -19575.116055 eV Core-core repulsion = 16720.218261 eV Total energy + Delta-G solvation = -2854.897795 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 255.194 amu Computer time = 0.45 seconds Orbital eigenvalues (eV) -39.74508 -38.64994 -36.96145 -35.33479 -34.39072 -31.31564 -29.72057 -28.00514 -27.71358 -24.15890 -23.90999 -23.42986 -23.01589 -21.02952 -20.72171 -18.56782 -17.54453 -17.14756 -16.69862 -16.46204 -15.93413 -15.78956 -15.47480 -14.94323 -14.63434 -14.45058 -14.02541 -13.77120 -13.53334 -13.30755 -13.14379 -13.00776 -12.75237 -12.59549 -12.45045 -12.33135 -12.21662 -12.01827 -11.68919 -11.60593 -11.47752 -11.44749 -11.18841 -11.03398 -10.67776 -10.51907 -10.31193 -8.93836 -8.14192 -6.21524 1.40987 1.42319 1.53685 2.42760 2.84140 3.05957 3.17537 3.29627 3.96759 3.99869 4.08899 4.20403 4.22591 4.24423 4.34823 4.37993 4.43497 4.55718 4.59494 4.65970 4.73781 4.82814 4.84689 4.88017 4.91688 4.97263 5.01665 5.06506 5.13325 5.14758 5.16546 5.23589 5.34048 5.38795 5.48720 5.51001 5.53184 5.78665 6.13194 6.45732 6.50095 6.72964 6.93573 7.45972 8.96463 Molecular weight = 255.19amu Principal moments of inertia in cm(-1) A = 0.021691 B = 0.004585 C = 0.004287 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1290.537708 B = 6105.445958 C = 6529.313197 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.090 4.090 3 C -0.149 4.149 4 C -0.111 4.111 5 C 0.058 3.942 6 O -0.398 6.398 7 C 0.081 3.919 8 C 0.055 3.945 9 N -0.509 5.509 10 C 0.210 3.790 11 C -0.502 4.502 12 H 0.066 0.934 13 C 0.000 4.000 14 N -0.939 5.939 15 Si 0.962 3.038 16 H -0.272 1.272 17 H -0.284 1.284 18 H -0.267 1.267 19 C 0.002 3.998 20 C -0.143 4.143 21 C -0.171 4.171 22 H 0.052 0.948 23 H 0.067 0.933 24 H 0.051 0.949 25 H 0.075 0.925 26 H 0.066 0.934 27 H 0.052 0.948 28 H 0.057 0.943 29 H 0.054 0.946 30 H 0.058 0.942 31 H 0.058 0.942 32 H 0.050 0.950 33 H 0.066 0.934 34 H 0.057 0.943 35 H 0.045 0.955 36 H 0.060 0.940 37 H -0.033 1.033 38 H -0.005 1.005 39 H 0.262 0.738 40 H 0.074 0.926 41 H 0.086 0.914 42 H 0.114 0.886 43 H 0.095 0.905 44 H 0.086 0.914 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.640 12.075 -16.677 20.908 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.108 4.108 3 C -0.206 4.206 4 C -0.149 4.149 5 C -0.018 4.018 6 O -0.318 6.318 7 C 0.004 3.996 8 C -0.074 4.074 9 N -0.233 5.233 10 C 0.084 3.916 11 C -0.540 4.540 12 H 0.084 0.916 13 C -0.197 4.197 14 N -0.581 5.581 15 Si 0.787 3.213 16 H -0.197 1.197 17 H -0.210 1.210 18 H -0.191 1.191 19 C -0.107 4.107 20 C -0.181 4.181 21 C -0.208 4.208 22 H 0.071 0.929 23 H 0.086 0.914 24 H 0.070 0.930 25 H 0.094 0.906 26 H 0.085 0.915 27 H 0.071 0.929 28 H 0.076 0.924 29 H 0.073 0.927 30 H 0.077 0.923 31 H 0.076 0.924 32 H 0.068 0.932 33 H 0.084 0.916 34 H 0.076 0.924 35 H 0.063 0.937 36 H 0.078 0.922 37 H -0.015 1.015 38 H 0.013 0.987 39 H 0.070 0.930 40 H 0.091 0.909 41 H 0.105 0.895 42 H 0.132 0.868 43 H 0.113 0.887 44 H 0.105 0.895 Dipole moment (debyes) X Y Z Total from point charges -4.213 11.988 -16.463 20.796 hybrid contribution 0.750 -0.811 0.914 1.434 sum -3.463 11.177 -15.549 19.460 Atomic orbital electron populations 1.21829 0.94512 1.01831 1.02223 1.21028 0.96300 0.96585 0.96896 1.21911 1.01201 0.95311 1.02188 1.21551 0.93637 1.00772 0.98907 1.22653 0.95323 0.96055 0.87761 1.88018 1.21926 1.78968 1.42860 1.22434 0.81598 0.98460 0.97107 1.22141 0.96804 0.90090 0.98315 1.61798 1.55850 1.00962 1.04729 1.19363 0.93868 0.92990 0.85360 1.21498 1.16718 1.10782 1.05047 0.91619 1.25848 0.97658 1.00814 0.95406 1.70094 1.37482 1.39957 1.10543 0.85489 0.79329 0.79296 0.77180 1.19706 1.20979 1.19149 1.22219 0.93913 0.99820 0.94770 1.23014 1.01720 1.00985 0.92376 1.23052 1.03490 0.91443 1.02825 0.92863 0.91350 0.93011 0.90616 0.91540 0.92887 0.92416 0.92716 0.92274 0.92358 0.93190 0.91579 0.92436 0.93658 0.92162 1.01545 0.98707 0.92964 0.90896 0.89533 0.86789 0.88657 0.89517 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.31 9.19 71.98 0.66 -1.65 16 2 C -0.09 -1.52 2.92 -10.79 -0.03 -1.56 16 3 C -0.15 -2.18 8.95 71.98 0.64 -1.53 16 4 C -0.11 -2.56 5.05 30.59 0.15 -2.41 16 5 C 0.06 1.42 5.69 71.98 0.41 1.83 16 6 O -0.40 -13.26 10.29 -148.98 -1.53 -14.79 16 7 C 0.08 2.42 5.91 71.98 0.43 2.85 16 8 C 0.05 2.06 5.32 86.30 0.46 2.52 16 9 N -0.51 -22.96 4.52 -875.51 -3.95 -26.91 16 10 C 0.21 11.62 4.77 85.56 0.41 12.03 16 11 C -0.50 -29.09 7.82 25.60 0.20 -28.89 16 12 H 0.07 3.77 5.78 -2.91 -0.02 3.76 16 13 C 0.00 -0.02 5.46 84.66 0.46 0.44 16 14 N -0.94 -57.92 13.29 21.45 0.28 -57.64 16 15 Si 0.96 45.52 29.54 68.60 2.03 47.54 16 16 H -0.27 -12.34 7.11 99.48 0.71 -11.63 16 17 H -0.28 -13.19 7.11 99.48 0.71 -12.48 16 18 H -0.27 -12.27 7.11 99.48 0.71 -11.56 16 19 C 0.00 0.07 4.18 44.92 0.19 0.26 16 20 C -0.14 -4.60 9.17 30.62 0.28 -4.32 16 21 C -0.17 -6.62 9.48 30.62 0.29 -6.33 16 22 H 0.05 0.86 8.14 -2.38 -0.02 0.84 16 23 H 0.07 0.87 8.14 -2.39 -0.02 0.85 16 24 H 0.05 0.86 8.14 -2.39 -0.02 0.84 16 25 H 0.08 1.21 8.14 -2.39 -0.02 1.19 16 26 H 0.07 0.80 8.14 -2.39 -0.02 0.78 16 27 H 0.05 0.81 8.14 -2.39 -0.02 0.79 16 28 H 0.06 0.82 6.56 -2.39 -0.02 0.81 16 29 H 0.05 1.44 8.14 -2.39 -0.02 1.42 16 30 H 0.06 1.46 8.14 -2.39 -0.02 1.44 16 31 H 0.06 1.21 6.56 -2.38 -0.02 1.19 16 32 H 0.05 1.12 8.14 -2.39 -0.02 1.10 16 33 H 0.07 1.60 8.14 -2.39 -0.02 1.58 16 34 H 0.06 1.62 6.29 -2.39 -0.02 1.60 16 35 H 0.05 1.59 8.12 -2.38 -0.02 1.57 16 36 H 0.06 2.41 7.83 -2.38 -0.02 2.40 16 37 H -0.03 -1.99 7.99 -2.39 -0.02 -2.01 16 38 H -0.01 -0.31 7.73 -2.39 -0.02 -0.33 16 39 H 0.26 15.21 8.31 -92.71 -0.77 14.44 16 40 H 0.07 2.75 8.14 -2.39 -0.02 2.73 16 41 H 0.09 2.96 8.14 -2.39 -0.02 2.94 16 42 H 0.11 2.84 8.14 -2.39 -0.02 2.82 16 43 H 0.10 3.30 8.14 -2.39 -0.02 3.28 16 44 H 0.09 3.92 5.44 -2.38 -0.01 3.90 16 Total: -1.00 -66.61 347.46 2.30 -64.31 By element: Atomic # 1 Polarization: 13.33 SS G_CDS: 0.93 Total: 14.25 kcal Atomic # 6 Polarization: -31.32 SS G_CDS: 4.55 Total: -26.77 kcal Atomic # 7 Polarization: -80.88 SS G_CDS: -3.67 Total: -84.55 kcal Atomic # 8 Polarization: -13.26 SS G_CDS: -1.53 Total: -14.79 kcal Atomic # 14 Polarization: 45.52 SS G_CDS: 2.03 Total: 47.54 kcal Total: -66.61 2.30 -64.31 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000042549381.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 12.342 kcal (2) G-P(sol) polarization free energy of solvation -66.611 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -54.268 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.304 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.307 kcal (6) G-S(sol) free energy of system = (1) + (5) -51.965 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.45 seconds