Wall clock time and date at job start Mon Mar 30 2020 07:00:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.52998 * 109.46911 * 2 1 4 4 C 1.52993 * 109.47185 * 120.00395 * 2 1 3 5 5 N 1.46900 * 109.47117 * 174.99945 * 4 2 1 6 6 C 1.46903 * 111.00385 * 170.00136 * 5 4 2 7 7 C 1.50697 * 109.46841 * 288.32420 * 6 5 4 8 8 H 1.08004 * 120.00400 * 359.97438 * 7 6 5 9 9 C 1.37877 * 120.00312 * 179.97438 * 7 6 5 10 10 N 1.31519 * 119.99677 * 359.97438 * 9 7 6 11 11 Si 1.86795 * 120.00409 * 179.97438 * 9 7 6 12 12 H 1.48501 * 109.47192 * 90.00191 * 11 9 7 13 13 H 1.48502 * 109.47422 * 209.99980 * 11 9 7 14 14 H 1.48501 * 109.47229 * 329.99968 * 11 9 7 15 15 C 1.46905 * 110.99842 * 293.95451 * 5 4 2 16 16 H 1.09003 * 109.47183 * 38.99543 * 15 5 4 17 17 C 1.52999 * 109.46883 * 278.99467 * 15 5 4 18 18 C 1.53001 * 109.47175 * 180.02562 * 17 15 5 19 19 C 1.53001 * 109.47154 * 59.99699 * 18 17 15 20 20 C 1.52998 * 109.47304 * 300.00604 * 19 18 17 21 21 C 1.53000 * 109.46931 * 158.99513 * 15 5 4 22 22 H 1.08991 * 109.47467 * 299.99703 * 21 15 5 23 23 O 1.42908 * 109.47305 * 60.00168 * 21 15 5 24 24 H 1.08998 * 109.47112 * 299.99780 * 1 2 3 25 25 H 1.08996 * 109.47251 * 59.99584 * 1 2 3 26 26 H 1.08993 * 109.46988 * 179.97438 * 1 2 3 27 27 H 1.09007 * 109.46889 * 240.00403 * 2 1 3 28 28 H 1.09008 * 109.46935 * 180.02562 * 3 2 1 29 29 H 1.08996 * 109.47503 * 300.00262 * 3 2 1 30 30 H 1.09002 * 109.47117 * 60.00947 * 3 2 1 31 31 H 1.08998 * 109.47307 * 55.00075 * 4 2 1 32 32 H 1.09001 * 109.47193 * 294.99463 * 4 2 1 33 33 H 1.08999 * 109.47270 * 168.32089 * 6 5 4 34 34 H 1.09005 * 109.46806 * 48.31909 * 6 5 4 35 35 H 0.96997 * 120.00111 * 179.97438 * 10 9 7 36 36 H 1.09003 * 109.47273 * 300.00021 * 17 15 5 37 37 H 1.08996 * 109.47611 * 60.00355 * 17 15 5 38 38 H 1.08994 * 109.47335 * 179.97438 * 18 17 15 39 39 H 1.09003 * 109.46977 * 300.00128 * 18 17 15 40 40 H 1.09003 * 109.46827 * 60.00338 * 19 18 17 41 41 H 1.08998 * 109.47610 * 180.02562 * 19 18 17 42 42 H 1.09005 * 109.47347 * 180.02562 * 20 19 18 43 43 H 1.09003 * 109.46961 * 299.99652 * 20 19 18 44 44 H 0.96697 * 114.00074 * 179.97438 * 23 21 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0400 -0.7213 1.2491 5 7 3.5040 -0.8267 1.1903 6 6 4.0500 -1.2967 2.4705 7 6 3.9324 -0.2016 3.4990 8 1 3.4962 0.7487 3.2286 9 6 4.3817 -0.4127 4.7853 10 7 4.9125 -1.5700 5.1148 11 14 4.2366 0.9450 6.0600 12 1 2.9330 0.8281 6.7616 13 1 5.3414 0.8200 7.0445 14 1 4.3201 2.2664 5.3876 15 6 3.9250 -1.6996 0.0862 16 1 3.2852 -1.5255 -0.7789 17 6 3.8092 -3.1623 0.5200 18 6 4.2483 -4.0715 -0.6296 19 6 5.7006 -3.7623 -0.9983 20 6 5.8164 -2.2996 -1.4319 21 6 5.3773 -1.3906 -0.2830 22 1 5.4598 -0.3486 -0.5920 23 8 6.2161 -1.6189 0.8513 24 1 -0.3633 0.5138 0.8900 25 1 -0.3633 0.5139 -0.8899 26 1 -0.3633 -1.0276 -0.0005 27 1 1.8933 -0.5138 -0.8901 28 1 3.1300 1.4425 -0.0005 29 1 1.6766 1.9564 -0.8899 30 1 1.6767 1.9563 0.8901 31 1 1.6054 -1.7198 1.2950 32 1 1.7517 -0.1584 2.1369 33 1 5.0990 -1.5636 2.3421 34 1 3.4910 -2.1707 2.8049 35 1 5.2290 -1.7185 6.0196 36 1 4.4490 -3.3364 1.3852 37 1 2.7747 -3.3825 0.7830 38 1 4.1662 -5.1134 -0.3204 39 1 3.6088 -3.8974 -1.4950 40 1 6.3401 -3.9363 -0.1328 41 1 6.0133 -4.4096 -1.8175 42 1 6.8511 -2.0794 -1.6951 43 1 5.1770 -2.1255 -2.2974 44 1 7.1531 -1.4430 0.6893 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000044299743.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:00:46 Heat of formation + Delta-G solvation = -67.898970 kcal Electronic energy + Delta-G solvation = -21046.425792 eV Core-core repulsion = 18190.837027 eV Total energy + Delta-G solvation = -2855.588765 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 255.194 amu Computer time = 0.39 seconds Orbital eigenvalues (eV) -39.36987 -36.56777 -34.44841 -33.78471 -32.17196 -29.56734 -28.69145 -26.79265 -26.60916 -24.27994 -22.62597 -21.83045 -20.62181 -19.64069 -18.30421 -16.43029 -16.11091 -15.38659 -15.10204 -14.52578 -14.16276 -14.11027 -13.76287 -13.43418 -13.04175 -12.58583 -12.44475 -12.22391 -12.03538 -11.82988 -11.57636 -11.49250 -11.13268 -11.04948 -10.80486 -10.74969 -10.59162 -10.55813 -10.40194 -10.35503 -9.95815 -9.84433 -9.68680 -9.35724 -9.18273 -8.78238 -8.17490 -6.97187 -5.83988 -3.82190 3.39568 3.45717 3.50119 4.54891 4.80062 4.85555 5.06770 5.22288 5.29266 5.38091 5.45217 5.52033 5.58391 5.63557 5.70964 5.80902 5.84805 5.91788 5.98144 6.05727 6.06343 6.14950 6.20251 6.23731 6.29470 6.43328 6.49629 6.50949 6.52540 6.56127 6.61343 6.77554 6.92532 6.97166 7.01237 7.60267 7.77288 7.99696 8.26346 8.43612 8.62275 8.80224 9.27290 9.78929 11.26384 Molecular weight = 255.19amu Principal moments of inertia in cm(-1) A = 0.015557 B = 0.008645 C = 0.006407 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1799.375395 B = 3238.177352 C = 4369.290633 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.095 4.095 3 C -0.133 4.133 4 C 0.065 3.935 5 N -0.523 5.523 6 C 0.182 3.818 7 C -0.497 4.497 8 H 0.057 0.943 9 C 0.053 3.947 10 N -0.898 5.898 11 Si 0.889 3.111 12 H -0.284 1.284 13 H -0.289 1.289 14 H -0.275 1.275 15 C 0.092 3.908 16 H 0.074 0.926 17 C -0.148 4.148 18 C -0.113 4.113 19 C -0.113 4.113 20 C -0.151 4.151 21 C 0.118 3.882 22 H 0.052 0.948 23 O -0.531 6.531 24 H 0.053 0.947 25 H 0.047 0.953 26 H 0.048 0.952 27 H 0.060 0.940 28 H 0.068 0.932 29 H 0.035 0.965 30 H 0.049 0.951 31 H 0.016 0.984 32 H 0.080 0.920 33 H 0.078 0.922 34 H -0.017 1.017 35 H 0.257 0.743 36 H 0.085 0.915 37 H 0.051 0.949 38 H 0.054 0.946 39 H 0.051 0.949 40 H 0.069 0.931 41 H 0.051 0.949 42 H 0.059 0.941 43 H 0.063 0.937 44 H 0.355 0.645 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.691 -1.241 -13.744 13.903 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.114 4.114 3 C -0.190 4.190 4 C -0.063 4.063 5 N -0.245 5.245 6 C 0.058 3.942 7 C -0.536 4.536 8 H 0.075 0.925 9 C -0.147 4.147 10 N -0.539 5.539 11 Si 0.718 3.282 12 H -0.211 1.211 13 H -0.215 1.215 14 H -0.200 1.200 15 C -0.018 4.018 16 H 0.091 0.909 17 C -0.187 4.187 18 C -0.151 4.151 19 C -0.151 4.151 20 C -0.189 4.189 21 C 0.059 3.941 22 H 0.070 0.930 23 O -0.335 6.335 24 H 0.073 0.927 25 H 0.067 0.933 26 H 0.067 0.933 27 H 0.079 0.921 28 H 0.087 0.913 29 H 0.054 0.946 30 H 0.068 0.932 31 H 0.034 0.966 32 H 0.098 0.902 33 H 0.096 0.904 34 H 0.001 0.999 35 H 0.066 0.934 36 H 0.104 0.896 37 H 0.069 0.931 38 H 0.073 0.927 39 H 0.070 0.930 40 H 0.088 0.912 41 H 0.069 0.931 42 H 0.078 0.922 43 H 0.082 0.918 44 H 0.201 0.799 Dipole moment (debyes) X Y Z Total from point charges -2.001 -1.000 -13.380 13.566 hybrid contribution 0.052 -0.028 0.673 0.676 sum -1.949 -1.028 -12.707 12.896 Atomic orbital electron populations 1.21812 0.96210 1.01026 1.01204 1.21201 0.94239 0.97261 0.98702 1.21663 1.02460 0.95032 0.99838 1.22058 0.89359 0.97477 0.97440 1.62296 1.07684 1.48403 1.06147 1.20127 0.97448 0.93693 0.82956 1.21242 1.38506 0.99760 0.94055 0.92495 1.24929 0.95963 0.95434 0.98348 1.69975 1.42034 1.22801 1.19090 0.86643 0.77343 0.82702 0.81529 1.21075 1.21481 1.20008 1.21679 0.93497 0.90833 0.95771 0.90854 1.22179 1.01124 0.96045 0.99314 1.21476 0.96088 0.99165 0.98377 1.21417 0.97388 0.95457 1.00794 1.22271 1.00954 0.96650 0.99021 1.21695 0.91031 0.96201 0.85217 0.93008 1.86887 1.20035 1.91269 1.35312 0.92739 0.93347 0.93322 0.92149 0.91336 0.94615 0.93175 0.96607 0.90167 0.90448 0.99935 0.93361 0.89638 0.93058 0.92734 0.93017 0.91209 0.93059 0.92233 0.91827 0.79868 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.95 9.19 37.16 0.34 -1.61 16 2 C -0.10 -1.50 2.86 -90.62 -0.26 -1.76 16 3 C -0.13 -2.08 9.08 37.16 0.34 -1.75 16 4 C 0.07 1.27 4.12 -3.83 -0.02 1.26 16 5 N -0.52 -11.10 3.78 -228.08 -0.86 -11.96 16 6 C 0.18 4.76 3.17 -4.98 -0.02 4.74 16 7 C -0.50 -14.24 8.45 -34.44 -0.29 -14.53 16 8 H 0.06 1.63 7.56 -52.48 -0.40 1.24 16 9 C 0.05 1.56 5.46 -17.82 -0.10 1.46 16 10 N -0.90 -27.37 13.29 55.43 0.74 -26.63 16 11 Si 0.89 22.29 29.54 -169.99 -5.02 17.27 16 12 H -0.28 -7.04 7.11 56.52 0.40 -6.64 16 13 H -0.29 -7.19 7.11 56.52 0.40 -6.79 16 14 H -0.28 -6.80 7.11 56.52 0.40 -6.40 16 15 C 0.09 1.64 1.99 -67.71 -0.13 1.50 16 16 H 0.07 1.20 5.80 -51.93 -0.30 0.90 16 17 C -0.15 -2.66 4.15 -26.73 -0.11 -2.77 16 18 C -0.11 -1.62 5.92 -26.73 -0.16 -1.78 16 19 C -0.11 -1.50 5.78 -26.73 -0.15 -1.66 16 20 C -0.15 -1.94 5.63 -26.76 -0.15 -2.09 16 21 C 0.12 1.92 3.43 -26.76 -0.09 1.83 16 22 H 0.05 0.85 8.14 -51.93 -0.42 0.43 16 23 O -0.53 -9.85 8.83 -35.23 -0.31 -10.16 16 24 H 0.05 0.74 8.14 -51.93 -0.42 0.32 16 25 H 0.05 0.57 8.14 -51.93 -0.42 0.15 16 26 H 0.05 0.63 8.14 -51.93 -0.42 0.21 16 27 H 0.06 0.92 6.08 -51.93 -0.32 0.60 16 28 H 0.07 1.19 7.75 -51.92 -0.40 0.79 16 29 H 0.03 0.48 8.14 -51.93 -0.42 0.05 16 30 H 0.05 0.82 8.14 -51.93 -0.42 0.39 16 31 H 0.02 0.31 7.04 -51.93 -0.37 -0.05 16 32 H 0.08 1.76 7.08 -51.93 -0.37 1.39 16 33 H 0.08 2.16 4.52 -51.93 -0.23 1.92 16 34 H -0.02 -0.49 7.22 -51.93 -0.37 -0.87 16 35 H 0.26 7.44 8.31 -40.82 -0.34 7.11 16 36 H 0.09 1.84 6.04 -51.93 -0.31 1.53 16 37 H 0.05 0.95 7.13 -51.93 -0.37 0.58 16 38 H 0.05 0.75 8.14 -51.93 -0.42 0.32 16 39 H 0.05 0.67 8.14 -51.93 -0.42 0.25 16 40 H 0.07 1.03 7.68 -51.93 -0.40 0.63 16 41 H 0.05 0.59 8.14 -51.93 -0.42 0.16 16 42 H 0.06 0.67 8.14 -51.93 -0.42 0.25 16 43 H 0.06 0.75 8.14 -51.93 -0.42 0.33 16 44 H 0.36 5.08 9.08 45.56 0.41 5.49 16 LS Contribution 326.85 15.07 4.93 4.93 Total: -1.00 -30.85 326.85 -8.55 -39.40 By element: Atomic # 1 Polarization: 11.51 SS G_CDS: -7.21 Total: 4.29 kcal Atomic # 6 Polarization: -16.34 SS G_CDS: -0.80 Total: -17.14 kcal Atomic # 7 Polarization: -38.46 SS G_CDS: -0.13 Total: -38.59 kcal Atomic # 8 Polarization: -9.85 SS G_CDS: -0.31 Total: -10.16 kcal Atomic # 14 Polarization: 22.29 SS G_CDS: -5.02 Total: 17.27 kcal Total LS contribution 4.93 Total: 4.93 kcal Total: -30.85 -8.55 -39.40 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000044299743.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -28.500 kcal (2) G-P(sol) polarization free energy of solvation -30.852 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -59.352 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.547 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.399 kcal (6) G-S(sol) free energy of system = (1) + (5) -67.899 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.39 seconds