Wall clock time and date at job start Mon Mar 30 2020 07:00:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.52998 * 109.46911 * 2 1 4 4 C 1.52993 * 109.47185 * 120.00395 * 2 1 3 5 5 N 1.46900 * 109.47117 * 174.99945 * 4 2 1 6 6 C 1.46903 * 111.00385 * 170.00136 * 5 4 2 7 7 C 1.50697 * 109.46841 * 288.32420 * 6 5 4 8 8 H 1.08004 * 120.00400 * 359.97438 * 7 6 5 9 9 C 1.37877 * 120.00312 * 179.97438 * 7 6 5 10 10 N 1.31519 * 119.99677 * 359.97438 * 9 7 6 11 11 Si 1.86795 * 120.00409 * 179.97438 * 9 7 6 12 12 H 1.48501 * 109.47192 * 90.00191 * 11 9 7 13 13 H 1.48502 * 109.47422 * 209.99980 * 11 9 7 14 14 H 1.48501 * 109.47229 * 329.99968 * 11 9 7 15 15 C 1.46905 * 110.99842 * 293.95451 * 5 4 2 16 16 H 1.09003 * 109.47183 * 38.99543 * 15 5 4 17 17 C 1.52999 * 109.46883 * 278.99467 * 15 5 4 18 18 C 1.53001 * 109.47175 * 180.02562 * 17 15 5 19 19 C 1.53001 * 109.47154 * 59.99699 * 18 17 15 20 20 C 1.52998 * 109.47304 * 300.00604 * 19 18 17 21 21 C 1.53000 * 109.46931 * 158.99513 * 15 5 4 22 22 H 1.08991 * 109.47467 * 299.99703 * 21 15 5 23 23 O 1.42908 * 109.47305 * 60.00168 * 21 15 5 24 24 H 1.08998 * 109.47112 * 299.99780 * 1 2 3 25 25 H 1.08996 * 109.47251 * 59.99584 * 1 2 3 26 26 H 1.08993 * 109.46988 * 179.97438 * 1 2 3 27 27 H 1.09007 * 109.46889 * 240.00403 * 2 1 3 28 28 H 1.09008 * 109.46935 * 180.02562 * 3 2 1 29 29 H 1.08996 * 109.47503 * 300.00262 * 3 2 1 30 30 H 1.09002 * 109.47117 * 60.00947 * 3 2 1 31 31 H 1.08998 * 109.47307 * 55.00075 * 4 2 1 32 32 H 1.09001 * 109.47193 * 294.99463 * 4 2 1 33 33 H 1.08999 * 109.47270 * 168.32089 * 6 5 4 34 34 H 1.09005 * 109.46806 * 48.31909 * 6 5 4 35 35 H 0.96997 * 120.00111 * 179.97438 * 10 9 7 36 36 H 1.09003 * 109.47273 * 300.00021 * 17 15 5 37 37 H 1.08996 * 109.47611 * 60.00355 * 17 15 5 38 38 H 1.08994 * 109.47335 * 179.97438 * 18 17 15 39 39 H 1.09003 * 109.46977 * 300.00128 * 18 17 15 40 40 H 1.09003 * 109.46827 * 60.00338 * 19 18 17 41 41 H 1.08998 * 109.47610 * 180.02562 * 19 18 17 42 42 H 1.09005 * 109.47347 * 180.02562 * 20 19 18 43 43 H 1.09003 * 109.46961 * 299.99652 * 20 19 18 44 44 H 0.96697 * 114.00074 * 179.97438 * 23 21 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0400 -0.7213 1.2491 5 7 3.5040 -0.8267 1.1903 6 6 4.0500 -1.2967 2.4705 7 6 3.9324 -0.2016 3.4990 8 1 3.4962 0.7487 3.2286 9 6 4.3817 -0.4127 4.7853 10 7 4.9125 -1.5700 5.1148 11 14 4.2366 0.9450 6.0600 12 1 2.9330 0.8281 6.7616 13 1 5.3414 0.8200 7.0445 14 1 4.3201 2.2664 5.3876 15 6 3.9250 -1.6996 0.0862 16 1 3.2852 -1.5255 -0.7789 17 6 3.8092 -3.1623 0.5200 18 6 4.2483 -4.0715 -0.6296 19 6 5.7006 -3.7623 -0.9983 20 6 5.8164 -2.2996 -1.4319 21 6 5.3773 -1.3906 -0.2830 22 1 5.4598 -0.3486 -0.5920 23 8 6.2161 -1.6189 0.8513 24 1 -0.3633 0.5138 0.8900 25 1 -0.3633 0.5139 -0.8899 26 1 -0.3633 -1.0276 -0.0005 27 1 1.8933 -0.5138 -0.8901 28 1 3.1300 1.4425 -0.0005 29 1 1.6766 1.9564 -0.8899 30 1 1.6767 1.9563 0.8901 31 1 1.6054 -1.7198 1.2950 32 1 1.7517 -0.1584 2.1369 33 1 5.0990 -1.5636 2.3421 34 1 3.4910 -2.1707 2.8049 35 1 5.2290 -1.7185 6.0196 36 1 4.4490 -3.3364 1.3852 37 1 2.7747 -3.3825 0.7830 38 1 4.1662 -5.1134 -0.3204 39 1 3.6088 -3.8974 -1.4950 40 1 6.3401 -3.9363 -0.1328 41 1 6.0133 -4.4096 -1.8175 42 1 6.8511 -2.0794 -1.6951 43 1 5.1770 -2.1255 -2.2974 44 1 7.1531 -1.4430 0.6893 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000044299743.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:00:45 Heat of formation + Delta-G solvation = -88.575755 kcal Electronic energy + Delta-G solvation = -21047.322405 eV Core-core repulsion = 18190.837027 eV Total energy + Delta-G solvation = -2856.485378 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 255.194 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -40.79539 -37.99004 -35.79604 -35.44576 -34.15048 -30.82968 -30.27808 -28.58445 -27.86836 -26.01056 -24.24211 -23.20148 -22.08913 -20.94844 -19.81943 -18.37263 -17.65340 -16.86705 -16.63004 -16.37488 -15.57066 -15.48234 -15.25403 -14.69716 -14.60547 -14.12877 -13.83682 -13.73915 -13.48577 -13.22089 -13.05056 -12.87215 -12.77306 -12.61321 -12.50533 -12.33794 -12.25219 -11.93760 -11.80686 -11.68154 -11.53741 -11.33747 -11.23855 -10.96172 -10.76260 -10.57715 -10.24565 -8.74995 -8.09144 -6.16229 1.38197 1.39642 1.50985 2.43708 3.20958 3.36068 3.55555 3.85455 3.97950 4.05547 4.13620 4.20963 4.33309 4.35747 4.42077 4.49087 4.62185 4.66739 4.74821 4.83916 4.89792 4.93157 4.97555 5.03595 5.09018 5.12324 5.17383 5.25273 5.27153 5.31594 5.32454 5.40705 5.49419 5.55884 5.57285 5.65206 5.73595 5.90046 6.27994 6.60636 6.84900 7.02345 7.21684 7.50418 9.00625 Molecular weight = 255.19amu Principal moments of inertia in cm(-1) A = 0.015557 B = 0.008645 C = 0.006407 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1799.375395 B = 3238.177352 C = 4369.290633 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C -0.086 4.086 3 C -0.128 4.128 4 C 0.067 3.933 5 N -0.526 5.526 6 C 0.204 3.796 7 C -0.512 4.512 8 H 0.051 0.949 9 C -0.001 4.001 10 N -0.934 5.934 11 Si 0.959 3.041 12 H -0.277 1.277 13 H -0.282 1.282 14 H -0.267 1.267 15 C 0.087 3.913 16 H 0.098 0.902 17 C -0.140 4.140 18 C -0.108 4.108 19 C -0.111 4.111 20 C -0.139 4.139 21 C 0.115 3.885 22 H 0.052 0.948 23 O -0.564 6.564 24 H 0.047 0.953 25 H 0.075 0.925 26 H 0.052 0.948 27 H 0.075 0.925 28 H 0.047 0.953 29 H 0.067 0.933 30 H 0.036 0.964 31 H 0.006 0.994 32 H 0.047 0.953 33 H 0.061 0.939 34 H -0.060 1.060 35 H 0.259 0.741 36 H 0.038 0.962 37 H 0.035 0.965 38 H 0.057 0.943 39 H 0.076 0.924 40 H 0.046 0.954 41 H 0.081 0.919 42 H 0.081 0.919 43 H 0.086 0.914 44 H 0.371 0.629 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.052 -0.386 -16.260 16.394 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C -0.105 4.105 3 C -0.185 4.185 4 C -0.062 4.062 5 N -0.248 5.248 6 C 0.079 3.921 7 C -0.551 4.551 8 H 0.069 0.931 9 C -0.198 4.198 10 N -0.575 5.575 11 Si 0.784 3.216 12 H -0.203 1.203 13 H -0.208 1.208 14 H -0.192 1.192 15 C -0.021 4.021 16 H 0.116 0.884 17 C -0.180 4.180 18 C -0.146 4.146 19 C -0.149 4.149 20 C -0.177 4.177 21 C 0.056 3.944 22 H 0.070 0.930 23 O -0.371 6.371 24 H 0.066 0.934 25 H 0.094 0.906 26 H 0.071 0.929 27 H 0.093 0.907 28 H 0.067 0.933 29 H 0.085 0.915 30 H 0.055 0.945 31 H 0.024 0.976 32 H 0.065 0.935 33 H 0.079 0.921 34 H -0.042 1.042 35 H 0.068 0.932 36 H 0.057 0.943 37 H 0.054 0.946 38 H 0.076 0.924 39 H 0.095 0.905 40 H 0.065 0.935 41 H 0.100 0.900 42 H 0.100 0.900 43 H 0.104 0.896 44 H 0.220 0.780 Dipole moment (debyes) X Y Z Total from point charges -2.362 -0.139 -15.922 16.097 hybrid contribution 0.154 -0.323 1.443 1.487 sum -2.208 -0.462 -14.479 14.654 Atomic orbital electron populations 1.21777 0.94108 1.01703 1.02216 1.21144 0.95915 0.96797 0.96617 1.21612 1.01113 0.95095 1.00728 1.22059 0.88515 0.97021 0.98557 1.62217 1.08596 1.49132 1.04860 1.19684 0.96139 0.91388 0.84936 1.21569 1.38297 1.00037 0.95213 0.93065 1.25805 0.95522 0.97880 1.00572 1.70119 1.42910 1.24846 1.19655 0.85546 0.77608 0.79722 0.78686 1.20278 1.20784 1.19154 1.21896 0.95359 0.89934 0.94958 0.88411 1.22036 0.99162 0.97423 0.99333 1.21461 0.97417 0.98294 0.97388 1.21412 0.95959 0.96541 1.00947 1.22185 1.02701 0.95049 0.97778 1.21806 0.89644 0.97231 0.85767 0.93042 1.86812 1.21552 1.91513 1.37231 0.93418 0.90625 0.92888 0.90679 0.93348 0.91455 0.94504 0.97573 0.93452 0.92123 1.04245 0.93243 0.94281 0.94640 0.92384 0.90530 0.93473 0.90048 0.90044 0.89586 0.78024 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.48 9.19 71.98 0.66 -2.82 16 2 C -0.09 -2.58 2.86 -10.80 -0.03 -2.61 16 3 C -0.13 -3.83 9.08 71.98 0.65 -3.18 16 4 C 0.07 2.70 4.12 86.30 0.36 3.06 16 5 N -0.53 -23.10 3.78 -875.52 -3.31 -26.41 16 6 C 0.20 11.34 3.17 85.56 0.27 11.61 16 7 C -0.51 -30.65 8.45 25.60 0.22 -30.43 16 8 H 0.05 3.05 7.56 -2.91 -0.02 3.02 16 9 C 0.00 -0.05 5.46 84.65 0.46 0.41 16 10 N -0.93 -59.06 13.29 21.45 0.28 -58.78 16 11 Si 0.96 46.74 29.54 68.60 2.03 48.77 16 12 H -0.28 -13.10 7.11 99.48 0.71 -12.40 16 13 H -0.28 -13.39 7.11 99.48 0.71 -12.68 16 14 H -0.27 -12.57 7.11 99.48 0.71 -11.87 16 15 C 0.09 3.10 1.99 44.91 0.09 3.19 16 16 H 0.10 2.99 5.80 -2.39 -0.01 2.98 16 17 C -0.14 -5.20 4.15 30.59 0.13 -5.08 16 18 C -0.11 -2.91 5.92 30.59 0.18 -2.73 16 19 C -0.11 -2.70 5.78 30.59 0.18 -2.52 16 20 C -0.14 -3.14 5.63 30.58 0.17 -2.97 16 21 C 0.11 3.63 3.43 30.58 0.10 3.74 16 22 H 0.05 1.63 8.14 -2.39 -0.02 1.61 16 23 O -0.56 -21.53 8.83 -148.98 -1.32 -22.84 16 24 H 0.05 1.24 8.14 -2.39 -0.02 1.22 16 25 H 0.07 1.50 8.14 -2.39 -0.02 1.48 16 26 H 0.05 1.27 8.14 -2.39 -0.02 1.25 16 27 H 0.08 2.05 6.08 -2.38 -0.01 2.04 16 28 H 0.05 1.63 7.75 -2.38 -0.02 1.61 16 29 H 0.07 1.59 8.14 -2.39 -0.02 1.57 16 30 H 0.04 1.17 8.14 -2.39 -0.02 1.15 16 31 H 0.01 0.25 7.04 -2.39 -0.02 0.24 16 32 H 0.05 2.19 7.08 -2.39 -0.02 2.17 16 33 H 0.06 3.61 4.52 -2.39 -0.01 3.60 16 34 H -0.06 -3.76 7.22 -2.38 -0.02 -3.78 16 35 H 0.26 15.45 8.31 -92.71 -0.77 14.68 16 36 H 0.04 1.80 6.04 -2.39 -0.01 1.78 16 37 H 0.03 1.37 7.13 -2.39 -0.02 1.35 16 38 H 0.06 1.52 8.14 -2.39 -0.02 1.51 16 39 H 0.08 1.73 8.14 -2.39 -0.02 1.71 16 40 H 0.05 1.36 7.68 -2.39 -0.02 1.34 16 41 H 0.08 1.54 8.14 -2.39 -0.02 1.52 16 42 H 0.08 1.53 8.14 -2.38 -0.02 1.51 16 43 H 0.09 1.62 8.14 -2.39 -0.02 1.60 16 44 H 0.37 10.82 9.08 -74.06 -0.67 10.15 16 Total: -1.00 -70.65 326.85 1.41 -69.24 By element: Atomic # 1 Polarization: 20.08 SS G_CDS: 0.28 Total: 20.36 kcal Atomic # 6 Polarization: -33.78 SS G_CDS: 3.44 Total: -30.34 kcal Atomic # 7 Polarization: -82.16 SS G_CDS: -3.03 Total: -85.19 kcal Atomic # 8 Polarization: -21.53 SS G_CDS: -1.32 Total: -22.84 kcal Atomic # 14 Polarization: 46.74 SS G_CDS: 2.03 Total: 48.77 kcal Total: -70.65 1.41 -69.24 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000044299743.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -19.336 kcal (2) G-P(sol) polarization free energy of solvation -70.650 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -89.986 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.410 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.240 kcal (6) G-S(sol) free energy of system = (1) + (5) -88.576 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds