Wall clock time and date at job start Mon Mar 30 2020 07:00:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52990 * 1 3 3 C 1.53001 * 109.47389 * 2 1 4 4 C 1.52996 * 109.47287 * 119.99688 * 2 1 3 5 5 N 1.46900 * 109.47376 * 174.67399 * 4 2 1 6 6 C 1.46902 * 110.99953 * 147.49507 * 5 4 2 7 7 C 1.50703 * 109.47226 * 69.79684 * 6 5 4 8 8 H 1.08000 * 120.00025 * 4.36528 * 7 6 5 9 9 C 1.37873 * 119.99839 * 184.37254 * 7 6 5 10 10 N 1.31518 * 119.99626 * 180.02562 * 9 7 6 11 11 Si 1.86800 * 120.00326 * 359.97438 * 9 7 6 12 12 H 1.48503 * 109.47074 * 90.00271 * 11 9 7 13 13 H 1.48502 * 109.47218 * 210.00000 * 11 9 7 14 14 H 1.48496 * 109.47033 * 330.00228 * 11 9 7 15 15 C 1.46897 * 111.00144 * 271.44568 * 5 4 2 16 16 H 1.09003 * 109.47455 * 285.91785 * 15 5 4 17 17 C 1.53004 * 109.46962 * 45.91908 * 15 5 4 18 18 C 1.53000 * 109.47014 * 179.97438 * 17 15 5 19 19 C 1.52999 * 109.47243 * 299.99670 * 18 17 15 20 20 C 1.52995 * 109.46878 * 60.00057 * 19 18 17 21 21 C 1.52999 * 109.47110 * 165.91465 * 15 5 4 22 22 H 1.09003 * 109.47223 * 300.00462 * 21 15 5 23 23 O 1.42902 * 109.47044 * 60.00349 * 21 15 5 24 24 H 1.09005 * 109.47554 * 300.00360 * 1 2 3 25 25 H 1.09007 * 109.47307 * 60.00102 * 1 2 3 26 26 H 1.08998 * 109.47213 * 180.02562 * 1 2 3 27 27 H 1.09005 * 109.47554 * 239.99640 * 2 1 3 28 28 H 1.09002 * 109.47622 * 184.97798 * 3 2 1 29 29 H 1.09000 * 109.47107 * 304.98089 * 3 2 1 30 30 H 1.08995 * 109.47165 * 64.97327 * 3 2 1 31 31 H 1.09007 * 109.46897 * 54.67661 * 4 2 1 32 32 H 1.09001 * 109.47241 * 294.67874 * 4 2 1 33 33 H 1.09001 * 109.47133 * 189.79491 * 6 5 4 34 34 H 1.09004 * 109.47063 * 309.79532 * 6 5 4 35 35 H 0.97001 * 119.99667 * 180.02562 * 10 9 7 36 36 H 1.08999 * 109.46819 * 299.99817 * 17 15 5 37 37 H 1.08998 * 109.47290 * 59.99219 * 17 15 5 38 38 H 1.09003 * 109.47270 * 59.99959 * 18 17 15 39 39 H 1.09005 * 109.46728 * 179.97438 * 18 17 15 40 40 H 1.09002 * 109.46642 * 180.02562 * 19 18 17 41 41 H 1.08998 * 109.46768 * 300.00407 * 19 18 17 42 42 H 1.09003 * 109.46981 * 60.00112 * 20 19 18 43 43 H 1.08999 * 109.46851 * 179.97438 * 20 19 18 44 44 H 0.96699 * 113.99473 * 179.97438 * 23 21 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0399 -0.7212 1.2492 5 7 3.5033 -0.8335 1.1867 6 6 4.0938 -0.7738 2.5305 7 6 3.7504 -2.0315 3.2864 8 1 3.2138 -2.8285 2.7932 9 6 4.1211 -2.1646 4.6077 10 7 3.8218 -3.2624 5.2672 11 14 5.0497 -0.7863 5.4607 12 1 4.0813 0.1505 6.0851 13 1 5.9314 -1.3586 6.5096 14 1 5.8744 -0.0552 4.4655 15 6 3.9077 -2.0608 0.4881 16 1 3.7360 -2.9208 1.1354 17 6 3.0843 -2.2137 -0.7924 18 6 3.5059 -3.4916 -1.5203 19 6 4.9916 -3.4093 -1.8763 20 6 5.8151 -3.2563 -0.5959 21 6 5.3935 -1.9790 0.1322 22 1 5.5652 -1.1190 -0.5152 23 8 6.1626 -1.8362 1.3280 24 1 -0.3634 0.5139 0.8900 25 1 -0.3634 0.5138 -0.8900 26 1 -0.3633 -1.0276 0.0005 27 1 1.8933 -0.5139 -0.8900 28 1 3.1263 1.4438 -0.0892 29 1 1.6056 1.9814 -0.8420 30 1 1.7512 1.9299 0.9311 31 1 1.6008 -1.7177 1.2982 32 1 1.7565 -0.1552 2.1367 33 1 5.1769 -0.6840 2.4478 34 1 3.6971 0.0903 3.0636 35 1 4.0823 -3.3559 6.1969 36 1 2.0258 -2.2719 -0.5388 37 1 3.2559 -1.3537 -1.4396 38 1 3.3345 -4.3519 -0.8732 39 1 2.9189 -3.6007 -2.4323 40 1 5.2918 -4.3196 -2.3953 41 1 5.1630 -2.5490 -2.5234 42 1 5.6436 -4.1166 0.0512 43 1 6.8735 -3.1981 -0.8495 44 1 7.1161 -1.7784 1.1778 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000044299747.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:00:49 Heat of formation + Delta-G solvation = -57.035079 kcal Electronic energy + Delta-G solvation = -21212.759410 eV Core-core repulsion = 18357.641739 eV Total energy + Delta-G solvation = -2855.117671 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 255.194 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -39.33736 -36.51059 -34.98151 -33.90270 -32.02245 -29.78464 -28.59120 -27.06401 -26.68494 -24.45624 -22.08691 -21.85055 -20.46611 -19.29218 -19.09863 -16.85147 -16.53767 -15.30090 -14.75098 -14.41470 -14.15860 -14.07850 -13.64507 -13.39839 -13.27143 -12.98426 -12.37915 -12.27865 -12.10609 -11.81990 -11.59561 -11.51231 -11.31790 -10.89900 -10.84113 -10.70742 -10.66394 -10.59758 -10.44888 -10.20529 -9.96779 -9.68826 -9.63230 -9.44001 -9.21161 -9.02967 -8.34518 -7.00930 -5.91885 -3.86131 3.39083 3.46070 3.53766 4.56900 4.72048 4.83247 5.04286 5.22931 5.32768 5.38009 5.43784 5.48862 5.53506 5.62511 5.73547 5.80088 5.85290 5.92574 5.96911 5.99055 6.10291 6.18023 6.24122 6.26858 6.31292 6.41056 6.42695 6.47304 6.51849 6.54686 6.58746 6.73278 6.83093 6.93012 7.03685 7.14601 7.62647 7.81959 8.26613 8.30310 8.43001 8.65304 9.10883 9.73653 11.21948 Molecular weight = 255.19amu Principal moments of inertia in cm(-1) A = 0.015519 B = 0.009571 C = 0.007058 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1803.781199 B = 2924.839536 C = 3965.923062 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.109 4.109 3 C -0.132 4.132 4 C 0.069 3.931 5 N -0.525 5.525 6 C 0.148 3.852 7 C -0.524 4.524 8 H 0.069 0.931 9 C 0.068 3.932 10 N -0.910 5.910 11 Si 0.878 3.122 12 H -0.282 1.282 13 H -0.292 1.292 14 H -0.262 1.262 15 C 0.093 3.907 16 H 0.070 0.930 17 C -0.118 4.118 18 C -0.122 4.122 19 C -0.113 4.113 20 C -0.152 4.152 21 C 0.121 3.879 22 H 0.046 0.954 23 O -0.529 6.529 24 H 0.050 0.950 25 H 0.047 0.953 26 H 0.049 0.951 27 H 0.081 0.919 28 H 0.063 0.937 29 H 0.036 0.964 30 H 0.044 0.956 31 H 0.034 0.966 32 H 0.062 0.938 33 H 0.066 0.934 34 H 0.010 0.990 35 H 0.259 0.741 36 H 0.071 0.929 37 H 0.066 0.934 38 H 0.062 0.938 39 H 0.058 0.942 40 H 0.057 0.943 41 H 0.059 0.941 42 H 0.070 0.930 43 H 0.057 0.943 44 H 0.351 0.649 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.165 3.660 -14.452 14.910 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.127 4.127 3 C -0.189 4.189 4 C -0.059 4.059 5 N -0.247 5.247 6 C 0.022 3.978 7 C -0.562 4.562 8 H 0.087 0.913 9 C -0.132 4.132 10 N -0.550 5.550 11 Si 0.707 3.293 12 H -0.209 1.209 13 H -0.218 1.218 14 H -0.187 1.187 15 C -0.016 4.016 16 H 0.088 0.912 17 C -0.156 4.156 18 C -0.160 4.160 19 C -0.151 4.151 20 C -0.190 4.190 21 C 0.062 3.938 22 H 0.063 0.937 23 O -0.332 6.332 24 H 0.069 0.931 25 H 0.066 0.934 26 H 0.068 0.932 27 H 0.099 0.901 28 H 0.082 0.918 29 H 0.055 0.945 30 H 0.064 0.936 31 H 0.052 0.948 32 H 0.080 0.920 33 H 0.084 0.916 34 H 0.028 0.972 35 H 0.068 0.932 36 H 0.089 0.911 37 H 0.085 0.915 38 H 0.081 0.919 39 H 0.077 0.923 40 H 0.076 0.924 41 H 0.077 0.923 42 H 0.089 0.911 43 H 0.076 0.924 44 H 0.196 0.804 Dipole moment (debyes) X Y Z Total from point charges -0.234 3.973 -14.259 14.804 hybrid contribution 0.681 -0.166 0.924 1.160 sum 0.448 3.807 -13.334 13.874 Atomic orbital electron populations 1.21820 0.96446 1.01113 1.00974 1.21596 0.94008 0.97100 1.00027 1.21656 1.01860 0.95513 0.99900 1.21955 0.89405 0.98374 0.96201 1.62416 1.07357 1.34491 1.20468 1.20523 0.97497 0.95475 0.84353 1.21609 1.36087 1.02471 0.96075 0.91323 1.24891 0.95465 0.95385 0.97462 1.69942 1.48088 1.26759 1.10189 0.86802 0.80415 0.82759 0.79371 1.20874 1.21797 1.18688 1.21542 0.91461 0.94651 0.93941 0.91224 1.21978 1.00011 0.96898 0.96701 1.21591 0.95710 0.98802 0.99876 1.21451 0.95408 1.01132 0.97095 1.22286 0.98990 1.00458 0.97255 1.21672 0.92090 0.94143 0.85918 0.93654 1.87070 1.19749 1.95905 1.30435 0.93057 0.93396 0.93194 0.90145 0.91790 0.94499 0.93647 0.94778 0.91974 0.91619 0.97190 0.93155 0.91096 0.91510 0.91927 0.92343 0.92429 0.92262 0.91092 0.92415 0.80411 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.94 9.19 37.15 0.34 -1.60 16 2 C -0.11 -1.64 2.45 -90.63 -0.22 -1.87 16 3 C -0.13 -1.93 9.03 37.16 0.34 -1.60 16 4 C 0.07 1.33 3.48 -3.83 -0.01 1.32 16 5 N -0.52 -10.79 4.04 -228.08 -0.92 -11.71 16 6 C 0.15 3.63 3.54 -4.97 -0.02 3.61 16 7 C -0.52 -14.87 8.31 -34.44 -0.29 -15.15 16 8 H 0.07 2.13 6.38 -52.49 -0.33 1.79 16 9 C 0.07 2.03 5.47 -17.82 -0.10 1.93 16 10 N -0.91 -28.60 13.96 55.43 0.77 -27.82 16 11 Si 0.88 22.50 27.38 -169.99 -4.65 17.85 16 12 H -0.28 -7.16 7.11 56.52 0.40 -6.75 16 13 H -0.29 -7.46 7.11 56.52 0.40 -7.05 16 14 H -0.26 -6.50 6.67 56.52 0.38 -6.13 16 15 C 0.09 1.77 1.49 -67.71 -0.10 1.67 16 16 H 0.07 1.63 5.73 -51.93 -0.30 1.34 16 17 C -0.12 -1.80 3.53 -26.73 -0.09 -1.89 16 18 C -0.12 -1.61 5.92 -26.73 -0.16 -1.77 16 19 C -0.11 -1.39 5.92 -26.73 -0.16 -1.55 16 20 C -0.15 -2.17 5.54 -26.76 -0.15 -2.32 16 21 C 0.12 2.07 3.10 -26.76 -0.08 1.99 16 22 H 0.05 0.74 8.14 -51.93 -0.42 0.32 16 23 O -0.53 -10.26 9.78 -35.23 -0.34 -10.60 16 24 H 0.05 0.69 8.14 -51.93 -0.42 0.27 16 25 H 0.05 0.55 8.14 -51.92 -0.42 0.13 16 26 H 0.05 0.65 8.14 -51.93 -0.42 0.23 16 27 H 0.08 1.18 4.30 -51.93 -0.22 0.95 16 28 H 0.06 1.01 7.90 -51.93 -0.41 0.60 16 29 H 0.04 0.46 8.14 -51.93 -0.42 0.04 16 30 H 0.04 0.68 8.14 -51.93 -0.42 0.26 16 31 H 0.03 0.70 7.00 -51.93 -0.36 0.33 16 32 H 0.06 1.30 7.53 -51.93 -0.39 0.90 16 33 H 0.07 1.68 4.69 -51.93 -0.24 1.43 16 34 H 0.01 0.26 6.98 -51.93 -0.36 -0.11 16 35 H 0.26 7.70 8.31 -40.82 -0.34 7.36 16 36 H 0.07 1.10 5.55 -51.93 -0.29 0.81 16 37 H 0.07 0.96 6.89 -51.93 -0.36 0.61 16 38 H 0.06 0.89 8.14 -51.93 -0.42 0.47 16 39 H 0.06 0.66 8.14 -51.93 -0.42 0.24 16 40 H 0.06 0.63 8.14 -51.93 -0.42 0.21 16 41 H 0.06 0.68 8.14 -51.93 -0.42 0.26 16 42 H 0.07 1.15 8.14 -51.93 -0.42 0.73 16 43 H 0.06 0.71 8.14 -51.93 -0.42 0.29 16 44 H 0.35 5.09 9.08 45.56 0.41 5.51 16 LS Contribution 321.08 15.07 4.84 4.84 Total: -1.00 -31.55 321.08 -8.10 -39.65 By element: Atomic # 1 Polarization: 12.12 SS G_CDS: -7.09 Total: 5.03 kcal Atomic # 6 Polarization: -16.53 SS G_CDS: -0.70 Total: -17.23 kcal Atomic # 7 Polarization: -39.38 SS G_CDS: -0.15 Total: -39.53 kcal Atomic # 8 Polarization: -10.26 SS G_CDS: -0.34 Total: -10.60 kcal Atomic # 14 Polarization: 22.50 SS G_CDS: -4.65 Total: 17.85 kcal Total LS contribution 4.84 Total: 4.84 kcal Total: -31.55 -8.10 -39.65 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000044299747.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -17.385 kcal (2) G-P(sol) polarization free energy of solvation -31.545 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -48.931 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.104 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.650 kcal (6) G-S(sol) free energy of system = (1) + (5) -57.035 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds