Wall clock time and date at job start Mon Mar 30 2020 07:00:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52990 * 1 3 3 C 1.53001 * 109.47389 * 2 1 4 4 C 1.52996 * 109.47287 * 119.99688 * 2 1 3 5 5 N 1.46900 * 109.47376 * 174.67399 * 4 2 1 6 6 C 1.46902 * 110.99953 * 147.49507 * 5 4 2 7 7 C 1.50703 * 109.47226 * 69.79684 * 6 5 4 8 8 H 1.08000 * 120.00025 * 4.36528 * 7 6 5 9 9 C 1.37873 * 119.99839 * 184.37254 * 7 6 5 10 10 N 1.31518 * 119.99626 * 180.02562 * 9 7 6 11 11 Si 1.86800 * 120.00326 * 359.97438 * 9 7 6 12 12 H 1.48503 * 109.47074 * 90.00271 * 11 9 7 13 13 H 1.48502 * 109.47218 * 210.00000 * 11 9 7 14 14 H 1.48496 * 109.47033 * 330.00228 * 11 9 7 15 15 C 1.46897 * 111.00144 * 271.44568 * 5 4 2 16 16 H 1.09003 * 109.47455 * 285.91785 * 15 5 4 17 17 C 1.53004 * 109.46962 * 45.91908 * 15 5 4 18 18 C 1.53000 * 109.47014 * 179.97438 * 17 15 5 19 19 C 1.52999 * 109.47243 * 299.99670 * 18 17 15 20 20 C 1.52995 * 109.46878 * 60.00057 * 19 18 17 21 21 C 1.52999 * 109.47110 * 165.91465 * 15 5 4 22 22 H 1.09003 * 109.47223 * 300.00462 * 21 15 5 23 23 O 1.42902 * 109.47044 * 60.00349 * 21 15 5 24 24 H 1.09005 * 109.47554 * 300.00360 * 1 2 3 25 25 H 1.09007 * 109.47307 * 60.00102 * 1 2 3 26 26 H 1.08998 * 109.47213 * 180.02562 * 1 2 3 27 27 H 1.09005 * 109.47554 * 239.99640 * 2 1 3 28 28 H 1.09002 * 109.47622 * 184.97798 * 3 2 1 29 29 H 1.09000 * 109.47107 * 304.98089 * 3 2 1 30 30 H 1.08995 * 109.47165 * 64.97327 * 3 2 1 31 31 H 1.09007 * 109.46897 * 54.67661 * 4 2 1 32 32 H 1.09001 * 109.47241 * 294.67874 * 4 2 1 33 33 H 1.09001 * 109.47133 * 189.79491 * 6 5 4 34 34 H 1.09004 * 109.47063 * 309.79532 * 6 5 4 35 35 H 0.97001 * 119.99667 * 180.02562 * 10 9 7 36 36 H 1.08999 * 109.46819 * 299.99817 * 17 15 5 37 37 H 1.08998 * 109.47290 * 59.99219 * 17 15 5 38 38 H 1.09003 * 109.47270 * 59.99959 * 18 17 15 39 39 H 1.09005 * 109.46728 * 179.97438 * 18 17 15 40 40 H 1.09002 * 109.46642 * 180.02562 * 19 18 17 41 41 H 1.08998 * 109.46768 * 300.00407 * 19 18 17 42 42 H 1.09003 * 109.46981 * 60.00112 * 20 19 18 43 43 H 1.08999 * 109.46851 * 179.97438 * 20 19 18 44 44 H 0.96699 * 113.99473 * 179.97438 * 23 21 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0399 -0.7212 1.2492 5 7 3.5033 -0.8335 1.1867 6 6 4.0938 -0.7738 2.5305 7 6 3.7504 -2.0315 3.2864 8 1 3.2138 -2.8285 2.7932 9 6 4.1211 -2.1646 4.6077 10 7 3.8218 -3.2624 5.2672 11 14 5.0497 -0.7863 5.4607 12 1 4.0813 0.1505 6.0851 13 1 5.9314 -1.3586 6.5096 14 1 5.8744 -0.0552 4.4655 15 6 3.9077 -2.0608 0.4881 16 1 3.7360 -2.9208 1.1354 17 6 3.0843 -2.2137 -0.7924 18 6 3.5059 -3.4916 -1.5203 19 6 4.9916 -3.4093 -1.8763 20 6 5.8151 -3.2563 -0.5959 21 6 5.3935 -1.9790 0.1322 22 1 5.5652 -1.1190 -0.5152 23 8 6.1626 -1.8362 1.3280 24 1 -0.3634 0.5139 0.8900 25 1 -0.3634 0.5138 -0.8900 26 1 -0.3633 -1.0276 0.0005 27 1 1.8933 -0.5139 -0.8900 28 1 3.1263 1.4438 -0.0892 29 1 1.6056 1.9814 -0.8420 30 1 1.7512 1.9299 0.9311 31 1 1.6008 -1.7177 1.2982 32 1 1.7565 -0.1552 2.1367 33 1 5.1769 -0.6840 2.4478 34 1 3.6971 0.0903 3.0636 35 1 4.0823 -3.3559 6.1969 36 1 2.0258 -2.2719 -0.5388 37 1 3.2559 -1.3537 -1.4396 38 1 3.3345 -4.3519 -0.8732 39 1 2.9189 -3.6007 -2.4323 40 1 5.2918 -4.3196 -2.3953 41 1 5.1630 -2.5490 -2.5234 42 1 5.6436 -4.1166 0.0512 43 1 6.8735 -3.1981 -0.8495 44 1 7.1161 -1.7784 1.1778 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000044299747.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:00:48 Heat of formation + Delta-G solvation = -79.553104 kcal Electronic energy + Delta-G solvation = -21213.735865 eV Core-core repulsion = 18357.641739 eV Total energy + Delta-G solvation = -2856.094126 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 255.194 amu Computer time = 0.86 seconds Orbital eigenvalues (eV) -40.77474 -37.91065 -36.34815 -35.50631 -34.09289 -31.15293 -30.05823 -28.81501 -27.83670 -26.11526 -23.72597 -23.17724 -21.83871 -20.94528 -20.37438 -18.88599 -18.03652 -16.86765 -16.34090 -16.06566 -15.81489 -15.37456 -15.03661 -14.68660 -14.64140 -14.41156 -14.12065 -13.65231 -13.59741 -13.22913 -13.09340 -12.95878 -12.85272 -12.44205 -12.33609 -12.21621 -12.13112 -12.02413 -11.69554 -11.66936 -11.58095 -11.39656 -11.23607 -10.93342 -10.77290 -10.74006 -10.33475 -8.82833 -8.23246 -6.21553 1.33327 1.35500 1.49777 2.39190 3.14179 3.27111 3.52456 3.87432 4.01602 4.11787 4.17196 4.26326 4.31556 4.40383 4.48288 4.55065 4.60887 4.65106 4.68963 4.88450 4.91395 4.94667 4.96407 5.06627 5.13214 5.17723 5.21851 5.22522 5.25659 5.27000 5.29426 5.34694 5.40260 5.53158 5.62773 5.64550 5.67605 5.72576 6.22686 6.48775 6.61118 6.82439 7.18755 7.41976 8.93955 Molecular weight = 255.19amu Principal moments of inertia in cm(-1) A = 0.015519 B = 0.009571 C = 0.007058 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1803.781199 B = 2924.839536 C = 3965.923062 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C -0.099 4.099 3 C -0.128 4.128 4 C 0.072 3.928 5 N -0.514 5.514 6 C 0.157 3.843 7 C -0.513 4.513 8 H 0.025 0.975 9 C 0.004 3.996 10 N -0.958 5.958 11 Si 0.947 3.053 12 H -0.275 1.275 13 H -0.288 1.288 14 H -0.246 1.246 15 C 0.091 3.909 16 H 0.012 0.988 17 C -0.110 4.110 18 C -0.121 4.121 19 C -0.108 4.108 20 C -0.146 4.146 21 C 0.120 3.880 22 H 0.065 0.935 23 O -0.565 6.565 24 H 0.045 0.955 25 H 0.075 0.925 26 H 0.047 0.953 27 H 0.093 0.907 28 H 0.052 0.948 29 H 0.065 0.935 30 H 0.035 0.965 31 H 0.008 0.992 32 H 0.037 0.963 33 H 0.067 0.933 34 H 0.004 0.996 35 H 0.260 0.740 36 H 0.062 0.938 37 H 0.087 0.913 38 H 0.040 0.960 39 H 0.088 0.912 40 H 0.077 0.923 41 H 0.081 0.919 42 H 0.039 0.961 43 H 0.084 0.916 44 H 0.372 0.628 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.899 5.595 -17.241 18.148 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.117 4.117 3 C -0.185 4.185 4 C -0.057 4.057 5 N -0.236 5.236 6 C 0.030 3.970 7 C -0.553 4.553 8 H 0.043 0.957 9 C -0.192 4.192 10 N -0.601 5.601 11 Si 0.772 3.228 12 H -0.200 1.200 13 H -0.214 1.214 14 H -0.169 1.169 15 C -0.018 4.018 16 H 0.030 0.970 17 C -0.147 4.147 18 C -0.159 4.159 19 C -0.145 4.145 20 C -0.184 4.184 21 C 0.061 3.939 22 H 0.083 0.917 23 O -0.371 6.371 24 H 0.064 0.936 25 H 0.094 0.906 26 H 0.066 0.934 27 H 0.111 0.889 28 H 0.071 0.929 29 H 0.084 0.916 30 H 0.054 0.946 31 H 0.027 0.973 32 H 0.056 0.944 33 H 0.085 0.915 34 H 0.022 0.978 35 H 0.069 0.931 36 H 0.081 0.919 37 H 0.106 0.894 38 H 0.059 0.941 39 H 0.107 0.893 40 H 0.096 0.904 41 H 0.099 0.901 42 H 0.058 0.942 43 H 0.102 0.898 44 H 0.220 0.780 Dipole moment (debyes) X Y Z Total from point charges 0.503 5.915 -17.079 18.081 hybrid contribution 0.401 -0.854 1.766 2.002 sum 0.905 5.061 -15.313 16.153 Atomic orbital electron populations 1.21801 0.94790 1.01388 1.02080 1.21518 0.95329 0.97133 0.97753 1.21617 1.01248 0.94958 1.00694 1.22020 0.88652 0.97200 0.97824 1.62519 1.07924 1.35233 1.17923 1.20334 0.97774 0.92889 0.86008 1.21815 1.34533 1.02731 0.96177 0.95654 1.25823 0.96823 0.98080 0.98428 1.70102 1.50116 1.29224 1.10649 0.85703 0.79231 0.79509 0.78360 1.20019 1.21412 1.16923 1.21632 0.94176 0.91390 0.94602 0.96981 1.21909 0.98792 0.98977 0.95018 1.21605 0.97313 0.96593 1.00343 1.21457 0.93800 1.03145 0.96110 1.22223 1.01068 0.97572 0.97539 1.21774 0.90278 0.96284 0.85591 0.91745 1.86957 1.21729 1.96115 1.32321 0.93623 0.90583 0.93428 0.88887 0.92884 0.91578 0.94585 0.97326 0.94410 0.91543 0.97821 0.93116 0.91912 0.89420 0.94148 0.89321 0.90387 0.90064 0.94179 0.89794 0.78032 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.53 9.19 71.98 0.66 -2.87 16 2 C -0.10 -2.84 2.45 -10.80 -0.03 -2.87 16 3 C -0.13 -3.44 9.03 71.98 0.65 -2.79 16 4 C 0.07 2.83 3.48 86.30 0.30 3.13 16 5 N -0.51 -21.49 4.04 -875.50 -3.54 -25.03 16 6 C 0.16 7.91 3.54 85.56 0.30 8.21 16 7 C -0.51 -30.70 8.31 25.60 0.21 -30.49 16 8 H 0.03 1.70 6.38 -2.91 -0.02 1.68 16 9 C 0.00 0.25 5.47 84.65 0.46 0.72 16 10 N -0.96 -62.97 13.96 21.45 0.30 -62.67 16 11 Si 0.95 47.33 27.38 68.60 1.88 49.20 16 12 H -0.27 -13.29 7.11 99.48 0.71 -12.58 16 13 H -0.29 -14.14 7.11 99.48 0.71 -13.43 16 14 H -0.25 -11.52 6.67 99.48 0.66 -10.86 16 15 C 0.09 3.54 1.49 44.92 0.07 3.61 16 16 H 0.01 0.62 5.73 -2.39 -0.01 0.60 16 17 C -0.11 -3.21 3.53 30.60 0.11 -3.10 16 18 C -0.12 -2.97 5.92 30.59 0.18 -2.79 16 19 C -0.11 -2.31 5.92 30.59 0.18 -2.13 16 20 C -0.15 -3.97 5.54 30.58 0.17 -3.80 16 21 C 0.12 3.99 3.10 30.58 0.09 4.09 16 22 H 0.06 1.93 8.14 -2.39 -0.02 1.91 16 23 O -0.56 -21.88 9.78 -148.98 -1.46 -23.33 16 24 H 0.04 1.17 8.14 -2.38 -0.02 1.15 16 25 H 0.08 1.49 8.14 -2.38 -0.02 1.47 16 26 H 0.05 1.19 8.14 -2.39 -0.02 1.17 16 27 H 0.09 2.47 4.30 -2.38 -0.01 2.46 16 28 H 0.05 1.54 7.90 -2.39 -0.02 1.52 16 29 H 0.07 1.41 8.14 -2.39 -0.02 1.39 16 30 H 0.03 1.02 8.14 -2.39 -0.02 1.00 16 31 H 0.01 0.37 7.00 -2.38 -0.02 0.35 16 32 H 0.04 1.64 7.53 -2.39 -0.02 1.62 16 33 H 0.07 3.40 4.69 -2.39 -0.01 3.38 16 34 H 0.00 0.19 6.98 -2.38 -0.02 0.17 16 35 H 0.26 16.07 8.31 -92.71 -0.77 15.30 16 36 H 0.06 1.93 5.55 -2.39 -0.01 1.91 16 37 H 0.09 2.24 6.89 -2.39 -0.02 2.22 16 38 H 0.04 1.16 8.14 -2.39 -0.02 1.14 16 39 H 0.09 1.69 8.14 -2.38 -0.02 1.67 16 40 H 0.08 1.41 8.14 -2.39 -0.02 1.39 16 41 H 0.08 1.46 8.14 -2.39 -0.02 1.44 16 42 H 0.04 1.33 8.14 -2.39 -0.02 1.31 16 43 H 0.08 1.85 8.14 -2.39 -0.02 1.83 16 44 H 0.37 10.42 9.08 -74.06 -0.67 9.75 16 Total: -1.00 -72.73 321.08 0.79 -71.94 By element: Atomic # 1 Polarization: 20.73 SS G_CDS: 0.25 Total: 20.98 kcal Atomic # 6 Polarization: -34.45 SS G_CDS: 3.37 Total: -31.09 kcal Atomic # 7 Polarization: -84.46 SS G_CDS: -3.24 Total: -87.70 kcal Atomic # 8 Polarization: -21.88 SS G_CDS: -1.46 Total: -23.33 kcal Atomic # 14 Polarization: 47.33 SS G_CDS: 1.88 Total: 49.20 kcal Total: -72.73 0.79 -71.94 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000044299747.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -7.615 kcal (2) G-P(sol) polarization free energy of solvation -72.730 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -80.346 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.793 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.938 kcal (6) G-S(sol) free energy of system = (1) + (5) -79.553 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.86 seconds