Wall clock time and date at job start Mon Mar 30 2020 07:16:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53008 * 1 3 3 C 1.52995 * 109.47232 * 2 1 4 4 C 1.53004 * 109.46975 * 120.00032 * 2 1 3 5 5 O 1.42895 * 109.47439 * 64.99620 * 4 2 1 6 6 C 1.42897 * 113.99968 * 180.02562 * 5 4 2 7 7 C 1.53125 * 109.52464 * 150.00027 * 6 5 4 8 8 C 1.53033 * 109.28287 * 177.61859 * 7 6 5 9 9 N 1.46851 * 109.52231 * 300.82460 * 8 7 6 10 10 C 1.46898 * 110.99682 * 185.83477 * 9 8 7 11 11 C 1.53006 * 109.47006 * 170.00115 * 10 9 8 12 12 C 1.50698 * 109.47184 * 180.02562 * 11 10 9 13 13 H 1.08005 * 119.99819 * 359.97438 * 12 11 10 14 14 C 1.37875 * 120.00046 * 180.02562 * 12 11 10 15 15 N 1.31511 * 120.00192 * 359.97438 * 14 12 11 16 16 Si 1.86798 * 119.99979 * 179.97438 * 14 12 11 17 17 H 1.48507 * 109.47309 * 359.97438 * 16 14 12 18 18 H 1.48497 * 109.47510 * 119.99847 * 16 14 12 19 19 H 1.48506 * 109.47246 * 239.99882 * 16 14 12 20 20 C 1.46846 * 111.19864 * 61.73920 * 9 8 7 21 21 C 1.53033 * 109.52460 * 298.25500 * 20 9 8 22 22 H 1.08994 * 109.46749 * 180.02562 * 1 2 3 23 23 H 1.08999 * 109.46770 * 300.00716 * 1 2 3 24 24 H 1.08995 * 109.46760 * 60.00293 * 1 2 3 25 25 H 1.08999 * 109.46770 * 239.99284 * 2 1 3 26 26 H 1.09001 * 109.46858 * 180.02562 * 3 2 1 27 27 H 1.09009 * 109.46927 * 299.99382 * 3 2 1 28 28 H 1.08993 * 109.47653 * 59.99539 * 3 2 1 29 29 H 1.09003 * 109.46963 * 304.99607 * 4 2 1 30 30 H 1.09000 * 109.47203 * 185.00096 * 4 2 1 31 31 H 1.08994 * 109.52543 * 29.87181 * 6 5 4 32 32 H 1.09005 * 109.50073 * 57.67835 * 7 6 5 33 33 H 1.08991 * 109.50379 * 297.56349 * 7 6 5 34 34 H 1.08989 * 109.46624 * 180.80484 * 8 7 6 35 35 H 1.09002 * 109.45127 * 60.82884 * 8 7 6 36 36 H 1.09001 * 109.47392 * 50.00413 * 10 9 8 37 37 H 1.09001 * 109.47520 * 290.00136 * 10 9 8 38 38 H 1.09001 * 109.47002 * 299.99782 * 11 10 9 39 39 H 1.08993 * 109.46955 * 60.00219 * 11 10 9 40 40 H 0.96996 * 120.00505 * 179.97438 * 15 14 12 41 41 H 1.09002 * 109.46555 * 58.27646 * 20 9 8 42 42 H 1.09001 * 109.46296 * 178.24247 * 20 9 8 43 43 H 1.08997 * 109.50475 * 299.23909 * 21 20 9 44 44 H 1.09002 * 109.50799 * 179.12007 * 21 20 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 6 2.0401 -0.7213 1.2493 5 8 1.6620 -2.0981 1.1921 6 6 2.0913 -2.8660 2.3182 7 6 1.0992 -4.0050 2.5693 8 6 1.5952 -4.8587 3.7385 9 7 2.9220 -5.4022 3.4211 10 6 3.3700 -6.3380 4.4611 11 6 4.6268 -7.0681 3.9831 12 6 5.0861 -8.0285 5.0497 13 1 4.5367 -8.1098 5.9760 14 6 6.2081 -8.8027 4.8434 15 7 6.8774 -8.7034 3.7156 16 14 6.7778 -9.9927 6.1658 17 1 5.8600 -9.9148 7.3306 18 1 6.7733 -11.3750 5.6232 19 1 8.1534 -9.6340 6.5953 20 6 3.9026 -4.3273 3.2225 21 6 3.4755 -3.4578 2.0379 22 1 -0.3632 -1.0276 0.0005 23 1 -0.3633 0.5139 0.8899 24 1 -0.3633 0.5138 -0.8900 25 1 1.8933 -0.5139 -0.8899 26 1 3.1301 1.4424 -0.0005 27 1 1.6768 1.9563 -0.8901 28 1 1.6768 1.9564 0.8899 29 1 1.6054 -0.2617 2.1370 30 1 3.1264 -0.6444 1.2952 31 1 2.1407 -2.2252 3.1986 32 1 1.0209 -4.6231 1.6749 33 1 0.1214 -3.5890 2.8115 34 1 0.8984 -5.6789 3.9106 35 1 1.6601 -4.2429 4.6356 36 1 2.5818 -7.0641 4.6606 37 1 3.5952 -5.7863 5.3738 38 1 4.4015 -7.6198 3.0704 39 1 5.4149 -6.3421 3.7837 40 1 7.6669 -9.2478 3.5706 41 1 3.9567 -3.7143 4.1222 42 1 4.8815 -4.7617 3.0199 43 1 3.4346 -4.0673 1.1351 44 1 4.1952 -2.6509 1.9005 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000054324742.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:16:57 Heat of formation + Delta-G solvation = -75.133959 kcal Electronic energy + Delta-G solvation = -19293.974503 eV Core-core repulsion = 16438.072006 eV Total energy + Delta-G solvation = -2855.902498 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 255.194 amu Computer time = 0.39 seconds Orbital eigenvalues (eV) -39.31003 -37.58443 -35.29090 -33.45740 -31.91088 -30.64603 -28.88494 -27.37538 -26.25388 -24.60017 -23.08724 -22.47059 -20.61060 -20.11522 -19.45251 -16.85298 -16.44852 -15.88269 -15.49637 -14.68605 -14.58483 -14.40001 -14.21517 -13.76890 -13.55479 -13.22069 -12.83260 -12.66272 -12.48338 -12.30909 -12.16428 -11.79861 -11.37116 -11.32378 -11.10026 -11.05294 -10.98612 -10.89316 -10.73213 -10.61691 -10.45448 -10.27764 -9.83636 -9.44403 -9.24855 -9.07594 -8.32070 -7.70129 -5.98584 -4.00908 3.31678 3.39080 3.42979 3.58626 4.37625 4.54596 4.63669 4.68421 4.89064 4.97512 5.00404 5.22652 5.27368 5.29511 5.37333 5.38687 5.44766 5.50908 5.59489 5.62208 5.68844 5.73027 5.78451 5.84332 5.92474 6.00186 6.08029 6.11149 6.14527 6.25981 6.30994 6.38623 6.53589 6.57122 6.98381 7.28984 7.52766 7.60407 7.81885 7.91583 8.10050 8.44844 9.06632 9.62689 11.12822 Molecular weight = 255.19amu Principal moments of inertia in cm(-1) A = 0.050538 B = 0.003284 C = 0.003161 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 553.907559 B = 8523.764110 C = 8854.908997 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C -0.096 4.096 3 C -0.146 4.146 4 C 0.066 3.934 5 O -0.380 6.380 6 C 0.092 3.908 7 C -0.110 4.110 8 C 0.058 3.942 9 N -0.539 5.539 10 C 0.063 3.937 11 C 0.027 3.973 12 C -0.521 4.521 13 H 0.054 0.946 14 C 0.058 3.942 15 N -0.893 5.893 16 Si 0.892 3.108 17 H -0.273 1.273 18 H -0.284 1.284 19 H -0.284 1.284 20 C 0.057 3.943 21 C -0.135 4.135 22 H 0.064 0.936 23 H 0.050 0.950 24 H 0.051 0.949 25 H 0.078 0.922 26 H 0.056 0.944 27 H 0.060 0.940 28 H 0.055 0.945 29 H 0.044 0.956 30 H 0.046 0.954 31 H 0.052 0.948 32 H 0.079 0.921 33 H 0.065 0.935 34 H 0.077 0.923 35 H 0.025 0.975 36 H 0.061 0.939 37 H 0.019 0.981 38 H 0.025 0.975 39 H 0.017 0.983 40 H 0.260 0.740 41 H 0.024 0.976 42 H 0.090 0.910 43 H 0.079 0.921 44 H 0.061 0.939 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.178 17.910 -5.140 21.729 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.114 4.114 3 C -0.204 4.204 4 C -0.011 4.011 5 O -0.300 6.300 6 C 0.034 3.966 7 C -0.147 4.147 8 C -0.071 4.071 9 N -0.263 5.263 10 C -0.063 4.063 11 C -0.010 4.010 12 C -0.560 4.560 13 H 0.072 0.928 14 C -0.144 4.144 15 N -0.532 5.532 16 Si 0.720 3.280 17 H -0.198 1.198 18 H -0.210 1.210 19 H -0.211 1.211 20 C -0.071 4.071 21 C -0.173 4.173 22 H 0.083 0.917 23 H 0.069 0.931 24 H 0.070 0.930 25 H 0.097 0.903 26 H 0.075 0.925 27 H 0.079 0.921 28 H 0.074 0.926 29 H 0.063 0.937 30 H 0.065 0.935 31 H 0.070 0.930 32 H 0.098 0.902 33 H 0.084 0.916 34 H 0.095 0.905 35 H 0.043 0.957 36 H 0.080 0.920 37 H 0.037 0.963 38 H 0.043 0.957 39 H 0.035 0.965 40 H 0.069 0.931 41 H 0.042 0.958 42 H 0.109 0.891 43 H 0.098 0.902 44 H 0.079 0.921 Dipole moment (debyes) X Y Z Total from point charges -11.175 17.502 -5.810 21.563 hybrid contribution 0.699 -0.106 1.709 1.849 sum -10.476 17.396 -4.102 20.716 Atomic orbital electron populations 1.21777 0.94675 1.02475 1.01138 1.21099 0.96694 0.95502 0.98149 1.21789 1.01141 0.95381 1.02047 1.22568 0.98425 0.82492 0.97599 1.87893 1.78330 1.19701 1.44033 1.22180 0.94486 0.92135 0.87768 1.21630 0.97346 0.95835 0.99938 1.22021 0.92430 0.97453 0.95196 1.62031 1.01234 1.16294 1.46788 1.22325 1.00022 0.93400 0.90586 1.19110 0.90306 0.94650 0.96944 1.21235 1.10706 1.21892 1.02172 0.92767 1.24996 0.96632 0.97195 0.95541 1.69979 1.18467 1.40576 1.24188 0.86547 0.78516 0.81011 0.81966 1.19796 1.20973 1.21066 1.22053 0.97456 0.91855 0.95700 1.22085 0.95856 0.99078 1.00323 0.91739 0.93074 0.92971 0.90344 0.92496 0.92130 0.92616 0.93749 0.93524 0.92981 0.90223 0.91608 0.90502 0.95679 0.92015 0.96297 0.95657 0.96502 0.93058 0.95791 0.89144 0.90186 0.92069 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.23 9.09 37.16 0.34 -0.89 16 2 C -0.10 -0.86 3.16 -90.62 -0.29 -1.15 16 3 C -0.15 -1.04 9.19 37.15 0.34 -0.70 16 4 C 0.07 0.69 5.13 37.16 0.19 0.88 16 5 O -0.38 -4.96 9.53 -35.23 -0.34 -5.30 16 6 C 0.09 1.23 2.68 -26.60 -0.07 1.16 16 7 C -0.11 -1.48 5.75 -26.65 -0.15 -1.63 16 8 C 0.06 0.87 5.46 -3.83 -0.02 0.85 16 9 N -0.54 -10.00 4.66 -234.67 -1.09 -11.09 16 10 C 0.06 1.35 4.90 -3.82 -0.02 1.34 16 11 C 0.03 0.72 4.90 -27.88 -0.14 0.58 16 12 C -0.52 -14.87 9.11 -34.44 -0.31 -15.19 16 13 H 0.05 1.50 7.74 -52.48 -0.41 1.10 16 14 C 0.06 1.67 5.46 -17.82 -0.10 1.57 16 15 N -0.89 -27.03 13.29 55.43 0.74 -26.29 16 16 Si 0.89 21.76 29.54 -169.99 -5.02 16.74 16 17 H -0.27 -6.52 7.11 56.52 0.40 -6.12 16 18 H -0.28 -6.85 7.11 56.52 0.40 -6.45 16 19 H -0.28 -6.86 7.11 56.52 0.40 -6.46 16 20 C 0.06 0.99 5.29 -3.84 -0.02 0.97 16 21 C -0.14 -1.99 5.72 -26.65 -0.15 -2.14 16 22 H 0.06 0.64 7.82 -51.93 -0.41 0.23 16 23 H 0.05 0.41 8.14 -51.93 -0.42 -0.01 16 24 H 0.05 0.39 8.14 -51.93 -0.42 -0.04 16 25 H 0.08 0.75 8.14 -51.93 -0.42 0.33 16 26 H 0.06 0.39 8.14 -51.93 -0.42 -0.03 16 27 H 0.06 0.38 8.14 -51.92 -0.42 -0.04 16 28 H 0.05 0.37 8.14 -51.93 -0.42 -0.05 16 29 H 0.04 0.43 8.09 -51.93 -0.42 0.01 16 30 H 0.05 0.48 7.96 -51.93 -0.41 0.06 16 31 H 0.05 0.66 7.79 -51.93 -0.40 0.26 16 32 H 0.08 1.16 8.14 -51.93 -0.42 0.73 16 33 H 0.07 0.77 8.14 -51.93 -0.42 0.35 16 34 H 0.08 1.11 8.01 -51.94 -0.42 0.70 16 35 H 0.03 0.37 8.14 -51.93 -0.42 -0.06 16 36 H 0.06 1.30 7.99 -51.93 -0.41 0.88 16 37 H 0.02 0.40 8.12 -51.93 -0.42 -0.02 16 38 H 0.03 0.72 8.14 -51.93 -0.42 0.30 16 39 H 0.02 0.46 6.43 -51.93 -0.33 0.13 16 40 H 0.26 7.39 8.31 -40.82 -0.34 7.05 16 41 H 0.02 0.40 8.14 -51.93 -0.42 -0.02 16 42 H 0.09 1.76 6.21 -51.93 -0.32 1.44 16 43 H 0.08 1.28 8.14 -51.93 -0.42 0.86 16 44 H 0.06 0.81 7.96 -51.93 -0.41 0.40 16 LS Contribution 344.31 15.07 5.19 5.19 Total: -1.00 -30.07 344.31 -9.51 -39.58 By element: Atomic # 1 Polarization: 4.11 SS G_CDS: -8.58 Total: -4.47 kcal Atomic # 6 Polarization: -13.96 SS G_CDS: -0.40 Total: -14.36 kcal Atomic # 7 Polarization: -37.02 SS G_CDS: -0.36 Total: -37.38 kcal Atomic # 8 Polarization: -4.96 SS G_CDS: -0.34 Total: -5.30 kcal Atomic # 14 Polarization: 21.76 SS G_CDS: -5.02 Total: 16.74 kcal Total LS contribution 5.19 Total: 5.19 kcal Total: -30.07 -9.51 -39.58 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000054324742.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -35.556 kcal (2) G-P(sol) polarization free energy of solvation -30.072 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -65.628 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.506 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.578 kcal (6) G-S(sol) free energy of system = (1) + (5) -75.134 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.39 seconds