Wall clock time and date at job start Mon Mar 30 2020 07:16:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53008 * 1 3 3 C 1.52995 * 109.47232 * 2 1 4 4 C 1.53004 * 109.46975 * 120.00032 * 2 1 3 5 5 O 1.42895 * 109.47439 * 64.99620 * 4 2 1 6 6 C 1.42897 * 113.99968 * 180.02562 * 5 4 2 7 7 C 1.53125 * 109.52464 * 150.00027 * 6 5 4 8 8 C 1.53033 * 109.28287 * 177.61859 * 7 6 5 9 9 N 1.46851 * 109.52231 * 300.82460 * 8 7 6 10 10 C 1.46898 * 110.99682 * 185.83477 * 9 8 7 11 11 C 1.53006 * 109.47006 * 170.00115 * 10 9 8 12 12 C 1.50698 * 109.47184 * 180.02562 * 11 10 9 13 13 H 1.08005 * 119.99819 * 359.97438 * 12 11 10 14 14 C 1.37875 * 120.00046 * 180.02562 * 12 11 10 15 15 N 1.31511 * 120.00192 * 359.97438 * 14 12 11 16 16 Si 1.86798 * 119.99979 * 179.97438 * 14 12 11 17 17 H 1.48507 * 109.47309 * 359.97438 * 16 14 12 18 18 H 1.48497 * 109.47510 * 119.99847 * 16 14 12 19 19 H 1.48506 * 109.47246 * 239.99882 * 16 14 12 20 20 C 1.46846 * 111.19864 * 61.73920 * 9 8 7 21 21 C 1.53033 * 109.52460 * 298.25500 * 20 9 8 22 22 H 1.08994 * 109.46749 * 180.02562 * 1 2 3 23 23 H 1.08999 * 109.46770 * 300.00716 * 1 2 3 24 24 H 1.08995 * 109.46760 * 60.00293 * 1 2 3 25 25 H 1.08999 * 109.46770 * 239.99284 * 2 1 3 26 26 H 1.09001 * 109.46858 * 180.02562 * 3 2 1 27 27 H 1.09009 * 109.46927 * 299.99382 * 3 2 1 28 28 H 1.08993 * 109.47653 * 59.99539 * 3 2 1 29 29 H 1.09003 * 109.46963 * 304.99607 * 4 2 1 30 30 H 1.09000 * 109.47203 * 185.00096 * 4 2 1 31 31 H 1.08994 * 109.52543 * 29.87181 * 6 5 4 32 32 H 1.09005 * 109.50073 * 57.67835 * 7 6 5 33 33 H 1.08991 * 109.50379 * 297.56349 * 7 6 5 34 34 H 1.08989 * 109.46624 * 180.80484 * 8 7 6 35 35 H 1.09002 * 109.45127 * 60.82884 * 8 7 6 36 36 H 1.09001 * 109.47392 * 50.00413 * 10 9 8 37 37 H 1.09001 * 109.47520 * 290.00136 * 10 9 8 38 38 H 1.09001 * 109.47002 * 299.99782 * 11 10 9 39 39 H 1.08993 * 109.46955 * 60.00219 * 11 10 9 40 40 H 0.96996 * 120.00505 * 179.97438 * 15 14 12 41 41 H 1.09002 * 109.46555 * 58.27646 * 20 9 8 42 42 H 1.09001 * 109.46296 * 178.24247 * 20 9 8 43 43 H 1.08997 * 109.50475 * 299.23909 * 21 20 9 44 44 H 1.09002 * 109.50799 * 179.12007 * 21 20 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 6 2.0401 -0.7213 1.2493 5 8 1.6620 -2.0981 1.1921 6 6 2.0913 -2.8660 2.3182 7 6 1.0992 -4.0050 2.5693 8 6 1.5952 -4.8587 3.7385 9 7 2.9220 -5.4022 3.4211 10 6 3.3700 -6.3380 4.4611 11 6 4.6268 -7.0681 3.9831 12 6 5.0861 -8.0285 5.0497 13 1 4.5367 -8.1098 5.9760 14 6 6.2081 -8.8027 4.8434 15 7 6.8774 -8.7034 3.7156 16 14 6.7778 -9.9927 6.1658 17 1 5.8600 -9.9148 7.3306 18 1 6.7733 -11.3750 5.6232 19 1 8.1534 -9.6340 6.5953 20 6 3.9026 -4.3273 3.2225 21 6 3.4755 -3.4578 2.0379 22 1 -0.3632 -1.0276 0.0005 23 1 -0.3633 0.5139 0.8899 24 1 -0.3633 0.5138 -0.8900 25 1 1.8933 -0.5139 -0.8899 26 1 3.1301 1.4424 -0.0005 27 1 1.6768 1.9563 -0.8901 28 1 1.6768 1.9564 0.8899 29 1 1.6054 -0.2617 2.1370 30 1 3.1264 -0.6444 1.2952 31 1 2.1407 -2.2252 3.1986 32 1 1.0209 -4.6231 1.6749 33 1 0.1214 -3.5890 2.8115 34 1 0.8984 -5.6789 3.9106 35 1 1.6601 -4.2429 4.6356 36 1 2.5818 -7.0641 4.6606 37 1 3.5952 -5.7863 5.3738 38 1 4.4015 -7.6198 3.0704 39 1 5.4149 -6.3421 3.7837 40 1 7.6669 -9.2478 3.5706 41 1 3.9567 -3.7143 4.1222 42 1 4.8815 -4.7617 3.0199 43 1 3.4346 -4.0673 1.1351 44 1 4.1952 -2.6509 1.9005 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000054324742.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:16:56 Heat of formation + Delta-G solvation = -92.917751 kcal Electronic energy + Delta-G solvation = -19294.745666 eV Core-core repulsion = 16438.072006 eV Total energy + Delta-G solvation = -2856.673661 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 255.194 amu Computer time = 0.45 seconds Orbital eigenvalues (eV) -40.47895 -38.71741 -36.26828 -35.30164 -33.52780 -31.90121 -30.66950 -27.99156 -27.26082 -26.30303 -24.53184 -23.80834 -21.94330 -21.34414 -20.60564 -18.62042 -17.78714 -16.84128 -16.67797 -16.55051 -16.06940 -15.58001 -15.29300 -15.07391 -14.70030 -14.35607 -14.20463 -14.11373 -13.58035 -13.40236 -13.14770 -13.09960 -12.94791 -12.86006 -12.45317 -12.31530 -12.18865 -12.11859 -11.94078 -11.81436 -11.62057 -11.47737 -11.41992 -11.25626 -11.16685 -10.55852 -10.34349 -9.17870 -8.20101 -6.31522 1.40086 1.40663 1.53938 2.40095 2.65294 3.05424 3.13239 3.78217 3.81294 3.94582 4.00190 4.13712 4.18365 4.23107 4.33599 4.39873 4.50618 4.55019 4.55500 4.64633 4.69726 4.74310 4.78437 4.85554 4.89562 4.98295 5.02362 5.04505 5.07281 5.09162 5.18487 5.24089 5.30248 5.42759 5.46021 5.46998 5.66883 5.78950 6.10453 6.32317 6.33770 6.34309 6.86084 7.37636 8.92309 Molecular weight = 255.19amu Principal moments of inertia in cm(-1) A = 0.050538 B = 0.003284 C = 0.003161 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 553.907559 B = 8523.764110 C = 8854.908997 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C -0.096 4.096 3 C -0.142 4.142 4 C 0.059 3.941 5 O -0.392 6.392 6 C 0.097 3.903 7 C -0.104 4.104 8 C 0.058 3.942 9 N -0.554 5.554 10 C 0.080 3.920 11 C 0.035 3.965 12 C -0.543 4.543 13 H 0.061 0.939 14 C 0.000 4.000 15 N -0.932 5.932 16 Si 0.967 3.033 17 H -0.261 1.261 18 H -0.278 1.278 19 H -0.278 1.278 20 C 0.060 3.940 21 C -0.128 4.128 22 H 0.047 0.953 23 H 0.057 0.943 24 H 0.062 0.938 25 H 0.067 0.933 26 H 0.057 0.943 27 H 0.069 0.931 28 H 0.062 0.938 29 H 0.056 0.944 30 H 0.048 0.952 31 H 0.067 0.933 32 H 0.065 0.935 33 H 0.090 0.910 34 H 0.084 0.916 35 H 0.038 0.962 36 H 0.066 0.934 37 H 0.022 0.978 38 H -0.010 1.010 39 H -0.006 1.006 40 H 0.263 0.737 41 H 0.034 0.966 42 H 0.057 0.943 43 H 0.061 0.939 44 H 0.075 0.925 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.260 19.058 -4.009 23.012 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C -0.115 4.115 3 C -0.200 4.200 4 C -0.017 4.017 5 O -0.311 6.311 6 C 0.039 3.961 7 C -0.141 4.141 8 C -0.070 4.070 9 N -0.279 5.279 10 C -0.048 4.048 11 C -0.002 4.002 12 C -0.582 4.582 13 H 0.079 0.921 14 C -0.198 4.198 15 N -0.572 5.572 16 Si 0.792 3.208 17 H -0.185 1.185 18 H -0.204 1.204 19 H -0.204 1.204 20 C -0.068 4.068 21 C -0.166 4.166 22 H 0.067 0.933 23 H 0.076 0.924 24 H 0.081 0.919 25 H 0.086 0.914 26 H 0.076 0.924 27 H 0.088 0.912 28 H 0.081 0.919 29 H 0.074 0.926 30 H 0.066 0.934 31 H 0.085 0.915 32 H 0.084 0.916 33 H 0.109 0.891 34 H 0.102 0.898 35 H 0.056 0.944 36 H 0.084 0.916 37 H 0.040 0.960 38 H 0.009 0.991 39 H 0.012 0.988 40 H 0.072 0.928 41 H 0.052 0.948 42 H 0.076 0.924 43 H 0.080 0.920 44 H 0.094 0.906 Dipole moment (debyes) X Y Z Total from point charges -12.276 18.669 -4.684 22.829 hybrid contribution 1.034 -0.416 1.290 1.705 sum -11.242 18.253 -3.393 21.705 Atomic orbital electron populations 1.21753 0.94341 1.01679 1.02052 1.21125 0.96989 0.96383 0.96981 1.21764 1.01225 0.94087 1.02888 1.22780 0.98722 0.81343 0.98842 1.87891 1.78294 1.21033 1.43920 1.22072 0.93141 0.92384 0.88466 1.21576 0.98512 0.95462 0.98589 1.22106 0.90289 0.98132 0.96453 1.61937 1.03048 1.17009 1.45954 1.21960 0.97778 0.93896 0.91127 1.18935 0.92060 0.93965 0.95235 1.21661 1.11170 1.22507 1.02826 0.92092 1.25984 0.96703 0.99141 0.97989 1.70119 1.19027 1.41696 1.26388 0.85366 0.78195 0.78253 0.79008 1.18481 1.20373 1.20358 1.21981 0.95848 0.91754 0.97214 1.22005 0.97647 0.98750 0.98186 0.93339 0.92381 0.91876 0.91426 0.92377 0.91186 0.91894 0.92621 0.93405 0.91540 0.91633 0.89136 0.89800 0.94371 0.91571 0.96013 0.99149 0.98757 0.92775 0.94777 0.92415 0.92035 0.90619 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.18 9.09 71.98 0.65 -1.53 16 2 C -0.10 -1.57 3.16 -10.79 -0.03 -1.61 16 3 C -0.14 -1.73 9.19 71.98 0.66 -1.07 16 4 C 0.06 1.14 5.13 71.98 0.37 1.50 16 5 O -0.39 -9.64 9.53 -148.98 -1.42 -11.06 16 6 C 0.10 2.43 2.68 30.68 0.08 2.51 16 7 C -0.10 -2.60 5.75 30.65 0.18 -2.43 16 8 C 0.06 1.65 5.46 86.32 0.47 2.13 16 9 N -0.55 -20.62 4.66 -896.37 -4.17 -24.79 16 10 C 0.08 3.44 4.90 86.31 0.42 3.87 16 11 C 0.04 1.94 4.90 29.85 0.15 2.08 16 12 C -0.54 -31.44 9.11 25.60 0.23 -31.21 16 13 H 0.06 3.36 7.74 -2.91 -0.02 3.34 16 14 C 0.00 -0.02 5.46 84.65 0.46 0.44 16 15 N -0.93 -57.74 13.29 21.45 0.28 -57.46 16 16 Si 0.97 44.70 29.54 68.60 2.03 46.72 16 17 H -0.26 -11.44 7.11 99.48 0.71 -10.73 16 18 H -0.28 -12.53 7.11 99.48 0.71 -11.82 16 19 H -0.28 -12.48 7.11 99.48 0.71 -11.77 16 20 C 0.06 2.10 5.29 86.32 0.46 2.56 16 21 C -0.13 -3.72 5.72 30.65 0.18 -3.55 16 22 H 0.05 0.90 7.82 -2.39 -0.02 0.88 16 23 H 0.06 0.81 8.14 -2.39 -0.02 0.79 16 24 H 0.06 0.82 8.14 -2.39 -0.02 0.80 16 25 H 0.07 1.24 8.14 -2.39 -0.02 1.22 16 26 H 0.06 0.69 8.14 -2.39 -0.02 0.67 16 27 H 0.07 0.72 8.14 -2.38 -0.02 0.70 16 28 H 0.06 0.68 8.14 -2.39 -0.02 0.66 16 29 H 0.06 0.94 8.09 -2.39 -0.02 0.93 16 30 H 0.05 0.90 7.96 -2.39 -0.02 0.88 16 31 H 0.07 1.50 7.79 -2.39 -0.02 1.48 16 32 H 0.06 1.85 8.14 -2.38 -0.02 1.83 16 33 H 0.09 1.86 8.14 -2.39 -0.02 1.85 16 34 H 0.08 2.28 8.01 -2.39 -0.02 2.26 16 35 H 0.04 1.01 8.14 -2.39 -0.02 0.99 16 36 H 0.07 2.77 7.99 -2.39 -0.02 2.75 16 37 H 0.02 0.92 8.12 -2.39 -0.02 0.90 16 38 H -0.01 -0.60 8.14 -2.39 -0.02 -0.62 16 39 H -0.01 -0.34 6.43 -2.39 -0.02 -0.36 16 40 H 0.26 15.25 8.31 -92.71 -0.77 14.48 16 41 H 0.03 1.11 8.14 -2.39 -0.02 1.09 16 42 H 0.06 2.37 6.21 -2.39 -0.01 2.36 16 43 H 0.06 2.01 8.14 -2.39 -0.02 1.99 16 44 H 0.08 1.96 7.96 -2.39 -0.02 1.94 16 Total: -1.00 -65.30 344.31 1.91 -63.39 By element: Atomic # 1 Polarization: 8.58 SS G_CDS: 0.91 Total: 9.49 kcal Atomic # 6 Polarization: -30.58 SS G_CDS: 4.28 Total: -26.30 kcal Atomic # 7 Polarization: -78.36 SS G_CDS: -3.89 Total: -82.25 kcal Atomic # 8 Polarization: -9.64 SS G_CDS: -1.42 Total: -11.06 kcal Atomic # 14 Polarization: 44.70 SS G_CDS: 2.03 Total: 46.72 kcal Total: -65.30 1.91 -63.39 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000054324742.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -29.524 kcal (2) G-P(sol) polarization free energy of solvation -65.300 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -94.824 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.907 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.394 kcal (6) G-S(sol) free energy of system = (1) + (5) -92.918 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.45 seconds