Wall clock time and date at job start Mon Mar 30 2020 06:36:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.52997 * 109.47342 * 2 1 4 4 C 1.53000 * 109.47396 * 180.02562 * 3 2 1 5 5 H 1.08999 * 109.47710 * 304.97617 * 4 3 2 6 6 C 1.53104 * 109.49520 * 185.04055 * 4 3 2 7 7 C 1.53171 * 109.15957 * 182.48915 * 6 4 3 8 8 H 1.08997 * 109.54430 * 296.93429 * 7 6 4 9 9 N 1.46903 * 109.54398 * 176.75829 * 7 6 4 10 10 C 1.46897 * 110.99681 * 155.17440 * 9 7 6 11 11 H 1.08995 * 109.47631 * 35.90760 * 10 9 7 12 12 C 1.50704 * 109.47119 * 275.89815 * 10 9 7 13 13 H 1.07999 * 119.99928 * 0.02562 * 12 10 9 14 14 C 1.37872 * 120.00164 * 179.97438 * 12 10 9 15 15 N 1.31512 * 120.00179 * 180.02562 * 14 12 10 16 16 Si 1.86807 * 119.99851 * 0.02562 * 14 12 10 17 17 H 1.48497 * 109.47135 * 89.99905 * 16 14 12 18 18 H 1.48501 * 109.46888 * 209.99613 * 16 14 12 19 19 H 1.48495 * 109.46897 * 329.99172 * 16 14 12 20 20 C 1.53001 * 109.47106 * 155.90537 * 10 9 7 21 21 C 1.53001 * 109.47160 * 294.90793 * 20 10 9 22 22 C 1.53181 * 109.11159 * 56.84619 * 7 6 4 23 23 C 1.53100 * 109.15944 * 303.06536 * 22 7 6 24 24 O 1.42901 * 109.41602 * 57.60819 * 23 22 7 25 25 H 1.08999 * 109.47301 * 180.02562 * 1 2 3 26 26 H 1.09011 * 109.46472 * 299.99415 * 1 2 3 27 27 H 1.08995 * 109.47745 * 59.99428 * 1 2 3 28 28 H 1.09008 * 109.46965 * 240.00484 * 2 1 3 29 29 H 1.08995 * 109.47745 * 120.00572 * 2 1 3 30 30 H 1.08998 * 109.47192 * 60.00331 * 3 2 1 31 31 H 1.09003 * 109.47323 * 300.00289 * 3 2 1 32 32 H 1.09004 * 109.59758 * 62.53680 * 6 4 3 33 33 H 1.09003 * 109.44871 * 302.35164 * 6 4 3 34 34 H 1.00895 * 110.99888 * 31.21550 * 9 7 6 35 35 H 0.97006 * 119.99947 * 180.02562 * 15 14 12 36 36 H 1.09011 * 109.47126 * 54.90172 * 20 10 9 37 37 H 1.08996 * 109.47379 * 174.90054 * 20 10 9 38 38 H 1.09003 * 109.47416 * 175.53503 * 21 20 10 39 39 H 1.09004 * 109.46861 * 295.53266 * 21 20 10 40 40 H 1.08998 * 109.47267 * 55.53106 * 21 20 10 41 41 H 1.09002 * 109.51998 * 62.96582 * 22 7 6 42 42 H 1.09000 * 109.52478 * 183.16233 * 22 7 6 43 43 H 1.09003 * 109.47530 * 177.58896 * 23 22 7 44 44 H 1.08996 * 109.47834 * 297.60892 * 23 22 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 3.5700 1.4425 -0.0006 5 1 3.9338 0.8533 0.8411 6 6 4.0810 2.8801 0.1262 7 6 5.6114 2.8772 0.0622 8 1 6.0107 2.3199 0.9095 9 7 6.1077 4.2592 0.1051 10 6 7.4799 4.3097 0.6271 11 1 8.0317 3.4346 0.2839 12 6 7.4441 4.3222 2.1336 13 1 6.4968 4.2949 2.6515 14 6 8.6207 4.3674 2.8508 15 7 8.5895 4.3778 4.1655 16 14 10.2593 4.4139 1.9550 17 1 10.6472 5.8255 1.7055 18 1 11.2975 3.7552 2.7878 19 1 10.1359 3.6980 0.6600 20 6 8.1709 5.5782 0.1229 21 6 8.3210 5.5072 -1.3980 22 6 6.0575 2.2129 -1.2440 23 6 5.4702 0.8008 -1.3157 24 8 4.0461 0.8732 -1.2219 25 1 -0.3634 -1.0276 0.0005 26 1 -0.3633 0.5138 0.8902 27 1 -0.3634 0.5139 -0.8899 28 1 1.8933 -0.5138 -0.8901 29 1 1.8934 -0.5139 0.8899 30 1 1.6768 1.9563 0.8900 31 1 1.6767 1.9564 -0.8900 32 1 3.7570 3.3007 1.0782 33 1 3.6833 3.4802 -0.6923 34 1 5.4927 4.8475 0.6469 35 1 9.4174 4.4100 4.6701 36 1 7.5711 6.4488 0.3885 37 1 9.1561 5.6622 0.5817 38 1 8.7407 6.4435 -1.7659 39 1 8.9855 4.6836 -1.6595 40 1 7.3437 5.3438 -1.8523 41 1 5.7009 2.7990 -2.0910 42 1 7.1457 2.1566 -1.2710 43 1 5.7491 0.3388 -2.2627 44 1 5.8591 0.2032 -0.4913 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000069890996.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:36:20 Heat of formation + Delta-G solvation = -74.648813 kcal Electronic energy + Delta-G solvation = -20118.350918 eV Core-core repulsion = 17262.469458 eV Total energy + Delta-G solvation = -2855.881460 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 255.194 amu Computer time = 0.39 seconds Orbital eigenvalues (eV) -39.39611 -36.55023 -34.91440 -33.45672 -31.93472 -31.06523 -29.81703 -27.19693 -26.18332 -23.43449 -22.71290 -22.05939 -20.87541 -19.71146 -19.58410 -16.98022 -16.30630 -15.77240 -15.10336 -14.80712 -14.54563 -14.44152 -13.94078 -13.67197 -13.45021 -12.86438 -12.69544 -12.59813 -12.31704 -12.14474 -11.73500 -11.61154 -11.44463 -11.34799 -11.18499 -10.88670 -10.82491 -10.71482 -10.61279 -10.38956 -10.14494 -9.84368 -9.75543 -9.50954 -9.30857 -9.10640 -8.59762 -7.38013 -6.15512 -4.16456 3.23689 3.34137 3.36391 3.96178 4.34475 4.65540 4.98423 5.00686 5.06803 5.17878 5.30111 5.31558 5.34111 5.44357 5.59403 5.65356 5.75229 5.78710 5.81935 5.90811 5.97146 6.02978 6.05323 6.08528 6.15287 6.22744 6.25102 6.28095 6.33774 6.42304 6.52001 6.68046 6.72880 6.77247 6.99208 7.10497 7.26748 7.45854 7.55595 8.03715 8.37433 8.46937 8.86860 9.48287 10.97406 Molecular weight = 255.19amu Principal moments of inertia in cm(-1) A = 0.027133 B = 0.005173 C = 0.004799 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1031.707688 B = 5411.188331 C = 5832.887936 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C -0.123 4.123 3 C -0.110 4.110 4 C 0.093 3.907 5 H 0.055 0.945 6 C -0.147 4.147 7 C 0.091 3.909 8 H 0.051 0.949 9 N -0.675 5.675 10 C 0.184 3.816 11 H 0.032 0.968 12 C -0.546 4.546 13 H 0.071 0.929 14 C 0.073 3.927 15 N -0.898 5.898 16 Si 0.889 3.111 17 H -0.277 1.277 18 H -0.298 1.298 19 H -0.265 1.265 20 C -0.116 4.116 21 C -0.144 4.144 22 C -0.140 4.140 23 C 0.063 3.937 24 O -0.382 6.382 25 H 0.051 0.949 26 H 0.052 0.948 27 H 0.052 0.948 28 H 0.068 0.932 29 H 0.058 0.942 30 H 0.074 0.926 31 H 0.069 0.931 32 H 0.069 0.931 33 H 0.073 0.927 34 H 0.334 0.666 35 H 0.264 0.736 36 H 0.056 0.944 37 H 0.044 0.956 38 H 0.032 0.968 39 H 0.037 0.963 40 H 0.064 0.936 41 H 0.071 0.929 42 H 0.068 0.932 43 H 0.088 0.912 44 H 0.046 0.954 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.880 -6.178 -9.929 15.309 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.160 4.160 3 C -0.147 4.147 4 C 0.035 3.965 5 H 0.073 0.927 6 C -0.186 4.186 7 C -0.020 4.020 8 H 0.069 0.931 9 N -0.305 5.305 10 C 0.074 3.926 11 H 0.050 0.950 12 C -0.585 4.585 13 H 0.089 0.911 14 C -0.130 4.130 15 N -0.536 5.536 16 Si 0.720 3.280 17 H -0.204 1.204 18 H -0.226 1.226 19 H -0.190 1.190 20 C -0.154 4.154 21 C -0.201 4.201 22 C -0.179 4.179 23 C -0.014 4.014 24 O -0.301 6.301 25 H 0.070 0.930 26 H 0.071 0.929 27 H 0.072 0.928 28 H 0.087 0.913 29 H 0.077 0.923 30 H 0.092 0.908 31 H 0.088 0.912 32 H 0.088 0.912 33 H 0.092 0.908 34 H 0.152 0.848 35 H 0.074 0.926 36 H 0.075 0.925 37 H 0.062 0.938 38 H 0.051 0.949 39 H 0.056 0.944 40 H 0.083 0.917 41 H 0.090 0.910 42 H 0.087 0.913 43 H 0.106 0.894 44 H 0.064 0.936 Dipole moment (debyes) X Y Z Total from point charges -9.695 -6.229 -10.567 15.635 hybrid contribution 1.184 0.102 0.993 1.549 sum -8.511 -6.127 -9.574 14.200 Atomic orbital electron populations 1.21782 0.96205 1.01313 1.01621 1.21485 0.95292 0.96867 1.02376 1.21626 0.93085 0.97391 1.02622 1.22087 0.94081 0.93310 0.87000 0.92657 1.22372 0.96587 0.96987 1.02615 1.21345 0.92521 0.91878 0.96246 0.93100 1.60781 1.04665 1.07277 1.57750 1.19591 0.86266 0.93500 0.93218 0.95041 1.21752 0.94684 1.51934 0.90117 0.91058 1.25005 0.99237 0.94068 0.94670 1.69918 1.27836 1.50188 1.05636 0.86816 0.83510 0.78074 0.79609 1.20443 1.22619 1.18992 1.21811 0.99243 1.00502 0.93819 1.21743 1.01450 0.99118 0.97798 1.22197 1.00980 0.95558 0.99151 1.22568 0.80849 0.96642 1.01376 1.87845 1.21147 1.82411 1.38697 0.93017 0.92921 0.92838 0.91310 0.92313 0.90751 0.91236 0.91210 0.90849 0.84815 0.92641 0.92473 0.93810 0.94852 0.94395 0.91707 0.91026 0.91312 0.89358 0.93555 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.36 9.91 37.16 0.37 -0.99 16 2 C -0.12 -1.30 5.83 -26.73 -0.16 -1.45 16 3 C -0.11 -1.26 4.92 -26.73 -0.13 -1.40 16 4 C 0.09 1.29 2.64 -26.68 -0.07 1.22 16 5 H 0.06 0.80 8.14 -51.93 -0.42 0.37 16 6 C -0.15 -2.23 4.70 -26.59 -0.12 -2.35 16 7 C 0.09 1.61 2.38 -67.53 -0.16 1.45 16 8 H 0.05 1.05 7.61 -51.93 -0.39 0.66 16 9 N -0.68 -13.25 5.44 -100.76 -0.55 -13.79 16 10 C 0.18 4.20 1.39 -68.86 -0.10 4.11 16 11 H 0.03 0.76 6.22 -51.93 -0.32 0.44 16 12 C -0.55 -14.86 8.80 -34.44 -0.30 -15.17 16 13 H 0.07 2.11 8.00 -52.49 -0.42 1.69 16 14 C 0.07 2.07 5.45 -17.82 -0.10 1.98 16 15 N -0.90 -27.15 13.96 55.43 0.77 -26.38 16 16 Si 0.89 21.93 24.41 -169.99 -4.15 17.78 16 17 H -0.28 -6.70 6.83 56.52 0.39 -6.32 16 18 H -0.30 -7.39 7.11 56.52 0.40 -6.99 16 19 H -0.26 -6.28 6.53 56.52 0.37 -5.91 16 20 C -0.12 -2.51 5.11 -26.73 -0.14 -2.65 16 21 C -0.14 -2.64 9.85 37.16 0.37 -2.28 16 22 C -0.14 -2.23 5.62 -26.59 -0.15 -2.38 16 23 C 0.06 0.88 6.84 37.21 0.25 1.13 16 24 O -0.38 -5.59 9.94 -35.23 -0.35 -5.94 16 25 H 0.05 0.42 8.14 -51.93 -0.42 0.00 16 26 H 0.05 0.45 8.14 -51.92 -0.42 0.02 16 27 H 0.05 0.46 8.14 -51.93 -0.42 0.04 16 28 H 0.07 0.78 7.82 -51.92 -0.41 0.37 16 29 H 0.06 0.62 8.14 -51.93 -0.42 0.20 16 30 H 0.07 0.80 8.14 -51.93 -0.42 0.37 16 31 H 0.07 0.80 8.14 -51.93 -0.42 0.38 16 32 H 0.07 1.05 8.14 -51.93 -0.42 0.63 16 33 H 0.07 1.10 8.14 -51.93 -0.42 0.67 16 34 H 0.33 6.63 8.08 -39.29 -0.32 6.31 16 35 H 0.26 7.52 8.31 -40.82 -0.34 7.18 16 36 H 0.06 1.23 8.14 -51.92 -0.42 0.80 16 37 H 0.04 1.01 3.22 -51.93 -0.17 0.85 16 38 H 0.03 0.54 8.14 -51.93 -0.42 0.12 16 39 H 0.04 0.68 8.14 -51.93 -0.42 0.26 16 40 H 0.06 1.15 7.64 -51.93 -0.40 0.75 16 41 H 0.07 1.14 8.14 -51.93 -0.42 0.72 16 42 H 0.07 1.15 7.48 -51.93 -0.39 0.76 16 43 H 0.09 1.06 8.14 -51.93 -0.42 0.63 16 44 H 0.05 0.65 8.14 -51.93 -0.42 0.22 16 LS Contribution 334.16 15.07 5.04 5.04 Total: -1.00 -28.83 334.16 -8.01 -36.84 By element: Atomic # 1 Polarization: 13.57 SS G_CDS: -8.34 Total: 5.23 kcal Atomic # 6 Polarization: -18.34 SS G_CDS: -0.44 Total: -18.78 kcal Atomic # 7 Polarization: -40.40 SS G_CDS: 0.23 Total: -40.17 kcal Atomic # 8 Polarization: -5.59 SS G_CDS: -0.35 Total: -5.94 kcal Atomic # 14 Polarization: 21.93 SS G_CDS: -4.15 Total: 17.78 kcal Total LS contribution 5.04 Total: 5.04 kcal Total: -28.83 -8.01 -36.84 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000069890996.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -37.809 kcal (2) G-P(sol) polarization free energy of solvation -28.826 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -66.636 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.013 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.839 kcal (6) G-S(sol) free energy of system = (1) + (5) -74.649 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.39 seconds