Wall clock time and date at job start Mon Mar 30 2020 06:36:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.52997 * 109.47342 * 2 1 4 4 C 1.53000 * 109.47396 * 180.02562 * 3 2 1 5 5 H 1.08999 * 109.47710 * 304.97617 * 4 3 2 6 6 C 1.53104 * 109.49520 * 185.04055 * 4 3 2 7 7 C 1.53171 * 109.15957 * 182.48915 * 6 4 3 8 8 H 1.08997 * 109.54430 * 296.93429 * 7 6 4 9 9 N 1.46903 * 109.54398 * 176.75829 * 7 6 4 10 10 C 1.46897 * 110.99681 * 155.17440 * 9 7 6 11 11 H 1.08995 * 109.47631 * 35.90760 * 10 9 7 12 12 C 1.50704 * 109.47119 * 275.89815 * 10 9 7 13 13 H 1.07999 * 119.99928 * 0.02562 * 12 10 9 14 14 C 1.37872 * 120.00164 * 179.97438 * 12 10 9 15 15 N 1.31512 * 120.00179 * 180.02562 * 14 12 10 16 16 Si 1.86807 * 119.99851 * 0.02562 * 14 12 10 17 17 H 1.48497 * 109.47135 * 89.99905 * 16 14 12 18 18 H 1.48501 * 109.46888 * 209.99613 * 16 14 12 19 19 H 1.48495 * 109.46897 * 329.99172 * 16 14 12 20 20 C 1.53001 * 109.47106 * 155.90537 * 10 9 7 21 21 C 1.53001 * 109.47160 * 294.90793 * 20 10 9 22 22 C 1.53181 * 109.11159 * 56.84619 * 7 6 4 23 23 C 1.53100 * 109.15944 * 303.06536 * 22 7 6 24 24 O 1.42901 * 109.41602 * 57.60819 * 23 22 7 25 25 H 1.08999 * 109.47301 * 180.02562 * 1 2 3 26 26 H 1.09011 * 109.46472 * 299.99415 * 1 2 3 27 27 H 1.08995 * 109.47745 * 59.99428 * 1 2 3 28 28 H 1.09008 * 109.46965 * 240.00484 * 2 1 3 29 29 H 1.08995 * 109.47745 * 120.00572 * 2 1 3 30 30 H 1.08998 * 109.47192 * 60.00331 * 3 2 1 31 31 H 1.09003 * 109.47323 * 300.00289 * 3 2 1 32 32 H 1.09004 * 109.59758 * 62.53680 * 6 4 3 33 33 H 1.09003 * 109.44871 * 302.35164 * 6 4 3 34 34 H 1.00895 * 110.99888 * 31.21550 * 9 7 6 35 35 H 0.97006 * 119.99947 * 180.02562 * 15 14 12 36 36 H 1.09011 * 109.47126 * 54.90172 * 20 10 9 37 37 H 1.08996 * 109.47379 * 174.90054 * 20 10 9 38 38 H 1.09003 * 109.47416 * 175.53503 * 21 20 10 39 39 H 1.09004 * 109.46861 * 295.53266 * 21 20 10 40 40 H 1.08998 * 109.47267 * 55.53106 * 21 20 10 41 41 H 1.09002 * 109.51998 * 62.96582 * 22 7 6 42 42 H 1.09000 * 109.52478 * 183.16233 * 22 7 6 43 43 H 1.09003 * 109.47530 * 177.58896 * 23 22 7 44 44 H 1.08996 * 109.47834 * 297.60892 * 23 22 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 3.5700 1.4425 -0.0006 5 1 3.9338 0.8533 0.8411 6 6 4.0810 2.8801 0.1262 7 6 5.6114 2.8772 0.0622 8 1 6.0107 2.3199 0.9095 9 7 6.1077 4.2592 0.1051 10 6 7.4799 4.3097 0.6271 11 1 8.0317 3.4346 0.2839 12 6 7.4441 4.3222 2.1336 13 1 6.4968 4.2949 2.6515 14 6 8.6207 4.3674 2.8508 15 7 8.5895 4.3778 4.1655 16 14 10.2593 4.4139 1.9550 17 1 10.6472 5.8255 1.7055 18 1 11.2975 3.7552 2.7878 19 1 10.1359 3.6980 0.6600 20 6 8.1709 5.5782 0.1229 21 6 8.3210 5.5072 -1.3980 22 6 6.0575 2.2129 -1.2440 23 6 5.4702 0.8008 -1.3157 24 8 4.0461 0.8732 -1.2219 25 1 -0.3634 -1.0276 0.0005 26 1 -0.3633 0.5138 0.8902 27 1 -0.3634 0.5139 -0.8899 28 1 1.8933 -0.5138 -0.8901 29 1 1.8934 -0.5139 0.8899 30 1 1.6768 1.9563 0.8900 31 1 1.6767 1.9564 -0.8900 32 1 3.7570 3.3007 1.0782 33 1 3.6833 3.4802 -0.6923 34 1 5.4927 4.8475 0.6469 35 1 9.4174 4.4100 4.6701 36 1 7.5711 6.4488 0.3885 37 1 9.1561 5.6622 0.5817 38 1 8.7407 6.4435 -1.7659 39 1 8.9855 4.6836 -1.6595 40 1 7.3437 5.3438 -1.8523 41 1 5.7009 2.7990 -2.0910 42 1 7.1457 2.1566 -1.2710 43 1 5.7491 0.3388 -2.2627 44 1 5.8591 0.2032 -0.4913 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000069890996.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:36:20 Heat of formation + Delta-G solvation = -92.938161 kcal Electronic energy + Delta-G solvation = -20119.144004 eV Core-core repulsion = 17262.469458 eV Total energy + Delta-G solvation = -2856.674546 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 255.194 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -40.63831 -38.17783 -35.87465 -35.06900 -33.93462 -32.12281 -31.30510 -28.77640 -27.52266 -24.80486 -24.29350 -23.27365 -21.90237 -21.44602 -20.92606 -19.05919 -17.43154 -17.16556 -16.85716 -16.14659 -15.92057 -15.43652 -15.35204 -15.25480 -14.72086 -14.60350 -14.12750 -13.83544 -13.62423 -13.40746 -13.25345 -13.11163 -12.94745 -12.55808 -12.44221 -12.30490 -12.22269 -12.05047 -11.84090 -11.65924 -11.48558 -11.44369 -11.28225 -11.27021 -11.00729 -10.73271 -10.40860 -9.11115 -8.36055 -6.40841 1.27340 1.31904 1.42489 2.26940 2.85337 2.99668 3.36488 3.73305 3.96265 4.01756 4.16604 4.22130 4.28287 4.34262 4.39780 4.42431 4.46283 4.57588 4.62086 4.75213 4.78619 4.79728 4.84126 4.93385 4.95435 4.99984 5.08708 5.11473 5.14298 5.20365 5.25404 5.31487 5.39001 5.41662 5.45412 5.51670 5.54303 5.63284 6.07578 6.30738 6.40415 6.61773 6.77899 7.28345 8.80214 Molecular weight = 255.19amu Principal moments of inertia in cm(-1) A = 0.027133 B = 0.005173 C = 0.004799 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1031.707688 B = 5411.188331 C = 5832.887936 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.121 4.121 3 C -0.105 4.105 4 C 0.094 3.906 5 H 0.045 0.955 6 C -0.139 4.139 7 C 0.087 3.913 8 H 0.015 0.985 9 N -0.663 5.663 10 C 0.192 3.808 11 H 0.024 0.976 12 C -0.545 4.545 13 H 0.032 0.968 14 C 0.016 3.984 15 N -0.946 5.946 16 Si 0.949 3.051 17 H -0.266 1.266 18 H -0.300 1.300 19 H -0.248 1.248 20 C -0.118 4.118 21 C -0.134 4.134 22 C -0.133 4.133 23 C 0.064 3.936 24 O -0.384 6.384 25 H 0.059 0.941 26 H 0.056 0.944 27 H 0.057 0.943 28 H 0.061 0.939 29 H 0.055 0.945 30 H 0.082 0.918 31 H 0.073 0.927 32 H 0.064 0.936 33 H 0.081 0.919 34 H 0.332 0.668 35 H 0.265 0.735 36 H 0.054 0.946 37 H 0.031 0.969 38 H 0.056 0.944 39 H 0.041 0.959 40 H 0.070 0.930 41 H 0.077 0.923 42 H 0.060 0.940 43 H 0.116 0.884 44 H 0.042 0.958 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.092 -6.348 -12.370 17.180 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.158 4.158 3 C -0.143 4.143 4 C 0.036 3.964 5 H 0.063 0.937 6 C -0.177 4.177 7 C -0.024 4.024 8 H 0.033 0.967 9 N -0.291 5.291 10 C 0.082 3.918 11 H 0.041 0.959 12 C -0.584 4.584 13 H 0.051 0.949 14 C -0.182 4.182 15 N -0.586 5.586 16 Si 0.776 3.224 17 H -0.192 1.192 18 H -0.228 1.228 19 H -0.172 1.172 20 C -0.156 4.156 21 C -0.192 4.192 22 C -0.171 4.171 23 C -0.013 4.013 24 O -0.303 6.303 25 H 0.078 0.922 26 H 0.075 0.925 27 H 0.076 0.924 28 H 0.079 0.921 29 H 0.074 0.926 30 H 0.100 0.900 31 H 0.092 0.908 32 H 0.083 0.917 33 H 0.100 0.900 34 H 0.149 0.851 35 H 0.074 0.926 36 H 0.073 0.927 37 H 0.050 0.950 38 H 0.075 0.925 39 H 0.060 0.940 40 H 0.089 0.911 41 H 0.096 0.904 42 H 0.079 0.921 43 H 0.134 0.866 44 H 0.061 0.939 Dipole moment (debyes) X Y Z Total from point charges -9.926 -6.401 -13.035 17.590 hybrid contribution 1.159 0.140 1.812 2.155 sum -8.768 -6.261 -11.223 15.557 Atomic orbital electron populations 1.21756 0.94753 1.02065 1.02059 1.21455 0.96546 0.95934 1.01879 1.21620 0.91114 0.98327 1.03212 1.22128 0.95680 0.91977 0.86604 0.93664 1.22300 0.94484 0.98260 1.02672 1.21439 0.94351 0.90387 0.96184 0.96734 1.60840 1.03282 1.08385 1.56621 1.19425 0.88194 0.94002 0.90208 0.95858 1.22078 0.93054 1.50604 0.92665 0.94947 1.25840 1.03128 0.93958 0.95251 1.70062 1.28855 1.52295 1.07434 0.85842 0.78797 0.78802 0.78939 1.19168 1.22831 1.17179 1.21755 0.98137 0.99212 0.96453 1.21648 1.02158 1.00598 0.94763 1.22128 1.00555 0.96694 0.97760 1.22642 0.80511 0.95396 1.02737 1.87855 1.21376 1.82306 1.38795 0.92162 0.92479 0.92408 0.92052 0.92592 0.89951 0.90813 0.91685 0.90023 0.85138 0.92594 0.92739 0.95041 0.92499 0.94014 0.91106 0.90416 0.92116 0.86644 0.93918 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.36 9.91 71.98 0.71 -1.65 16 2 C -0.12 -2.37 5.83 30.59 0.18 -2.19 16 3 C -0.11 -2.27 4.92 30.59 0.15 -2.12 16 4 C 0.09 2.53 2.64 30.63 0.08 2.61 16 5 H 0.05 1.31 8.14 -2.39 -0.02 1.29 16 6 C -0.14 -4.14 4.70 30.69 0.14 -3.99 16 7 C 0.09 3.09 2.38 45.03 0.11 3.19 16 8 H 0.01 0.62 7.61 -2.39 -0.02 0.61 16 9 N -0.66 -25.83 5.44 -472.71 -2.57 -28.40 16 10 C 0.19 8.74 1.39 44.17 0.06 8.80 16 11 H 0.02 1.12 6.22 -2.39 -0.01 1.10 16 12 C -0.55 -30.51 8.80 25.60 0.23 -30.28 16 13 H 0.03 2.01 8.00 -2.91 -0.02 1.99 16 14 C 0.02 0.95 5.45 84.65 0.46 1.41 16 15 N -0.95 -59.01 13.96 21.45 0.30 -58.71 16 16 Si 0.95 45.15 24.41 68.60 1.67 46.83 16 17 H -0.27 -12.07 6.83 99.48 0.68 -11.39 16 18 H -0.30 -14.29 7.11 99.48 0.71 -13.58 16 19 H -0.25 -11.00 6.53 99.48 0.65 -10.35 16 20 C -0.12 -4.91 5.11 30.59 0.16 -4.75 16 21 C -0.13 -4.51 9.85 71.98 0.71 -3.80 16 22 C -0.13 -4.05 5.62 30.69 0.17 -3.88 16 23 C 0.06 1.68 6.84 72.02 0.49 2.18 16 24 O -0.38 -10.59 9.94 -148.98 -1.48 -12.07 16 25 H 0.06 0.85 8.14 -2.39 -0.02 0.83 16 26 H 0.06 0.85 8.14 -2.38 -0.02 0.84 16 27 H 0.06 0.87 8.14 -2.39 -0.02 0.85 16 28 H 0.06 1.30 7.82 -2.38 -0.02 1.28 16 29 H 0.06 1.12 8.14 -2.39 -0.02 1.10 16 30 H 0.08 1.64 8.14 -2.39 -0.02 1.62 16 31 H 0.07 1.55 8.14 -2.39 -0.02 1.53 16 32 H 0.06 1.98 8.14 -2.38 -0.02 1.96 16 33 H 0.08 2.31 8.14 -2.39 -0.02 2.29 16 34 H 0.33 13.26 8.08 -89.70 -0.72 12.54 16 35 H 0.27 15.54 8.31 -92.70 -0.77 14.77 16 36 H 0.05 2.27 8.14 -2.38 -0.02 2.25 16 37 H 0.03 1.39 3.22 -2.39 -0.01 1.38 16 38 H 0.06 1.65 8.14 -2.39 -0.02 1.63 16 39 H 0.04 1.36 8.14 -2.38 -0.02 1.34 16 40 H 0.07 2.29 7.64 -2.39 -0.02 2.27 16 41 H 0.08 2.29 8.14 -2.39 -0.02 2.27 16 42 H 0.06 1.94 7.48 -2.39 -0.02 1.93 16 43 H 0.12 2.43 8.14 -2.39 -0.02 2.41 16 44 H 0.04 1.15 8.14 -2.39 -0.02 1.13 16 Total: -1.00 -62.64 334.16 1.71 -60.94 By element: Atomic # 1 Polarization: 25.75 SS G_CDS: 0.13 Total: 25.88 kcal Atomic # 6 Polarization: -38.12 SS G_CDS: 3.65 Total: -34.47 kcal Atomic # 7 Polarization: -84.84 SS G_CDS: -2.27 Total: -87.11 kcal Atomic # 8 Polarization: -10.59 SS G_CDS: -1.48 Total: -12.07 kcal Atomic # 14 Polarization: 45.15 SS G_CDS: 1.67 Total: 46.83 kcal Total: -62.64 1.71 -60.94 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000069890996.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -31.999 kcal (2) G-P(sol) polarization free energy of solvation -62.645 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -94.644 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.706 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.939 kcal (6) G-S(sol) free energy of system = (1) + (5) -92.938 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds