Wall clock time and date at job start Mon Mar 30 2020 06:36:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.53009 * 109.47036 * 2 1 4 4 C 1.52992 * 109.47093 * 180.02562 * 3 2 1 5 5 H 1.08996 * 109.49402 * 54.97043 * 4 3 2 6 6 C 1.53097 * 109.48234 * 175.00053 * 4 3 2 7 7 C 1.53167 * 109.16617 * 177.58927 * 6 4 3 8 8 H 1.08997 * 109.54502 * 183.06209 * 7 6 4 9 9 N 1.46909 * 109.54274 * 62.88870 * 7 6 4 10 10 C 1.46903 * 111.00036 * 153.91824 * 9 7 6 11 11 H 1.09001 * 109.47065 * 36.91905 * 10 9 7 12 12 C 1.50692 * 109.46995 * 276.91671 * 10 9 7 13 13 H 1.08000 * 120.00272 * 359.97438 * 12 10 9 14 14 C 1.37881 * 119.99931 * 180.02562 * 12 10 9 15 15 N 1.31516 * 119.99852 * 359.97438 * 14 12 10 16 16 Si 1.86801 * 120.00013 * 180.02562 * 14 12 10 17 17 H 1.48503 * 109.47272 * 59.99564 * 16 14 12 18 18 H 1.48500 * 109.46954 * 179.97438 * 16 14 12 19 19 H 1.48501 * 109.47015 * 299.99732 * 16 14 12 20 20 C 1.52994 * 109.47172 * 156.91429 * 10 9 7 21 21 C 1.52999 * 109.47236 * 294.91822 * 20 10 9 22 22 C 1.53172 * 109.04005 * 303.02329 * 7 6 4 23 23 C 1.53095 * 109.16572 * 56.97490 * 22 7 6 24 24 O 1.42893 * 109.41365 * 302.39651 * 23 22 7 25 25 H 1.09003 * 109.47094 * 299.99985 * 1 2 3 26 26 H 1.08998 * 109.47431 * 60.00188 * 1 2 3 27 27 H 1.08998 * 109.46884 * 180.02562 * 1 2 3 28 28 H 1.09005 * 109.47275 * 240.00525 * 2 1 3 29 29 H 1.08998 * 109.47431 * 119.99812 * 2 1 3 30 30 H 1.09005 * 109.46660 * 60.00148 * 3 2 1 31 31 H 1.08998 * 109.46857 * 300.00164 * 3 2 1 32 32 H 1.09004 * 109.51924 * 57.68069 * 6 4 3 33 33 H 1.08995 * 109.51959 * 297.49982 * 6 4 3 34 34 H 1.00896 * 110.99905 * 29.96117 * 9 7 6 35 35 H 0.96996 * 119.99468 * 180.02562 * 15 14 12 36 36 H 1.09005 * 109.46880 * 54.91490 * 20 10 9 37 37 H 1.08989 * 109.47365 * 174.91457 * 20 10 9 38 38 H 1.08996 * 109.47476 * 295.49520 * 21 20 10 39 39 H 1.09006 * 109.47107 * 55.50058 * 21 20 10 40 40 H 1.09009 * 109.47293 * 175.49191 * 21 20 10 41 41 H 1.09006 * 109.52835 * 176.88979 * 22 7 6 42 42 H 1.09005 * 109.52213 * 297.07160 * 22 7 6 43 43 H 1.08998 * 109.48038 * 182.40690 * 23 22 7 44 44 H 1.09002 * 109.47805 * 62.37867 * 23 22 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 6 3.5699 1.4426 -0.0006 5 1 3.9333 0.8530 -0.8422 6 6 4.0805 2.8804 -0.1264 7 6 5.6109 2.8778 -0.0657 8 1 5.9790 3.9031 -0.1001 9 7 6.1467 2.1249 -1.2078 10 6 7.4992 2.5831 -1.5526 11 1 8.0430 2.8292 -0.6406 12 6 7.4071 3.8061 -2.4282 13 1 6.4407 4.2031 -2.7015 14 6 8.5568 4.4178 -2.8812 15 7 9.7338 3.9341 -2.5487 16 14 8.4428 5.9343 -3.9659 17 1 7.7265 7.0117 -3.2368 18 1 9.8100 6.3974 -4.3145 19 1 7.7012 5.5996 -5.2082 20 6 8.2379 1.4731 -2.3030 21 6 8.4430 0.2769 -1.3714 22 6 6.0581 2.2143 1.2404 23 6 5.4712 0.8022 1.3135 24 8 4.0471 0.8743 1.2207 25 1 -0.3633 0.5138 0.8900 26 1 -0.3634 0.5138 -0.8900 27 1 -0.3633 -1.0277 0.0005 28 1 1.8934 -0.5138 -0.8901 29 1 1.8934 -0.5138 0.8900 30 1 1.6766 1.9564 0.8901 31 1 1.6766 1.9564 -0.8900 32 1 3.6844 3.4805 0.6929 33 1 3.7543 3.3008 -1.0777 34 1 5.5297 2.1876 -2.0037 35 1 10.5425 4.3646 -2.8671 36 1 7.6490 1.1642 -3.1666 37 1 9.2068 1.8433 -2.6376 38 1 9.0980 0.5648 -0.5491 39 1 7.4799 -0.0434 -0.9738 40 1 8.8972 -0.5432 -1.9276 41 1 7.1464 2.1584 1.2667 42 1 5.7021 2.8009 2.0874 43 1 5.7509 0.3409 2.2605 44 1 5.8594 0.2042 0.4890 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000069890998.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:36:23 Heat of formation + Delta-G solvation = -81.030062 kcal Electronic energy + Delta-G solvation = -20380.601439 eV Core-core repulsion = 17524.443267 eV Total energy + Delta-G solvation = -2856.158172 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 255.194 amu Computer time = 0.39 seconds Orbital eigenvalues (eV) -39.31203 -36.15233 -34.76730 -33.32588 -31.55081 -30.89763 -29.47206 -26.87643 -25.79977 -23.56877 -22.83400 -22.15089 -20.83911 -19.53548 -18.75522 -16.61512 -16.12437 -15.64550 -14.88443 -14.69633 -14.52764 -14.21605 -13.85880 -13.29455 -13.02622 -12.81675 -12.65249 -12.47884 -12.05223 -11.85224 -11.54109 -11.38193 -11.18375 -11.09448 -11.04965 -10.87079 -10.71662 -10.68233 -10.54942 -10.29506 -9.93650 -9.89106 -9.60890 -9.38907 -9.16711 -8.84305 -8.38375 -7.25995 -6.01142 -4.14339 3.25998 3.31587 3.33740 4.17983 4.37578 4.82366 5.08375 5.14358 5.20396 5.28031 5.39300 5.46544 5.49959 5.61508 5.70930 5.76951 5.82513 5.90719 5.99305 6.03786 6.04997 6.17723 6.28362 6.34816 6.36941 6.40924 6.49738 6.55638 6.58617 6.64052 6.70768 6.78599 7.11825 7.16720 7.43067 7.58437 7.70097 7.76247 8.07295 8.15169 8.32326 8.64820 8.98412 9.53422 10.98637 Molecular weight = 255.19amu Principal moments of inertia in cm(-1) A = 0.024446 B = 0.005485 C = 0.004998 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1145.118433 B = 5103.430020 C = 5600.657971 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C -0.122 4.122 3 C -0.112 4.112 4 C 0.099 3.901 5 H 0.066 0.934 6 C -0.148 4.148 7 C 0.089 3.911 8 H 0.051 0.949 9 N -0.683 5.683 10 C 0.216 3.784 11 H 0.033 0.967 12 C -0.546 4.546 13 H 0.051 0.949 14 C 0.068 3.932 15 N -0.885 5.885 16 Si 0.888 3.112 17 H -0.279 1.279 18 H -0.287 1.287 19 H -0.278 1.278 20 C -0.106 4.106 21 C -0.138 4.138 22 C -0.138 4.138 23 C 0.072 3.928 24 O -0.387 6.387 25 H 0.051 0.949 26 H 0.051 0.949 27 H 0.050 0.950 28 H 0.059 0.941 29 H 0.068 0.932 30 H 0.065 0.935 31 H 0.071 0.929 32 H 0.064 0.936 33 H 0.066 0.934 34 H 0.327 0.673 35 H 0.262 0.738 36 H 0.029 0.971 37 H 0.089 0.911 38 H 0.035 0.965 39 H 0.049 0.951 40 H 0.024 0.976 41 H 0.071 0.929 42 H 0.056 0.944 43 H 0.076 0.924 44 H 0.065 0.935 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.636 -5.702 5.318 14.007 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.159 4.159 3 C -0.150 4.150 4 C 0.042 3.958 5 H 0.084 0.916 6 C -0.187 4.187 7 C -0.022 4.022 8 H 0.069 0.931 9 N -0.313 5.313 10 C 0.108 3.892 11 H 0.051 0.949 12 C -0.585 4.585 13 H 0.069 0.931 14 C -0.135 4.135 15 N -0.523 5.523 16 Si 0.716 3.284 17 H -0.205 1.205 18 H -0.212 1.212 19 H -0.203 1.203 20 C -0.145 4.145 21 C -0.195 4.195 22 C -0.177 4.177 23 C -0.005 4.005 24 O -0.307 6.307 25 H 0.070 0.930 26 H 0.070 0.930 27 H 0.069 0.931 28 H 0.078 0.922 29 H 0.087 0.913 30 H 0.083 0.917 31 H 0.089 0.911 32 H 0.083 0.917 33 H 0.085 0.915 34 H 0.143 0.857 35 H 0.072 0.928 36 H 0.048 0.952 37 H 0.108 0.892 38 H 0.054 0.946 39 H 0.068 0.932 40 H 0.043 0.957 41 H 0.090 0.910 42 H 0.075 0.925 43 H 0.094 0.906 44 H 0.083 0.917 Dipole moment (debyes) X Y Z Total from point charges -11.322 -6.256 5.834 14.190 hybrid contribution 0.150 2.033 -1.293 2.414 sum -11.172 -4.223 4.540 12.778 Atomic orbital electron populations 1.21786 0.96419 1.01229 1.01467 1.21472 0.95025 0.96953 1.02458 1.21659 0.93896 0.97251 1.02151 1.21969 0.92947 0.93256 0.87665 0.91598 1.22372 0.96888 0.97456 1.01942 1.21331 0.91925 0.96666 0.92265 0.93071 1.60962 1.05768 1.56604 1.07982 1.19148 0.84214 0.91023 0.94799 0.94936 1.21830 0.92396 1.12225 1.32023 0.93056 1.24924 0.95466 0.97069 0.95992 1.69864 0.97274 1.40043 1.45108 0.86734 0.77097 0.83496 0.81101 1.20458 1.21238 1.20321 1.21488 1.02524 0.93866 0.96580 1.21731 1.00048 0.98259 0.99503 1.22103 1.01377 0.97051 0.97137 1.22426 0.80264 0.96588 1.01178 1.87783 1.21703 1.82566 1.38642 0.92972 0.93021 0.93066 0.92228 0.91326 0.91670 0.91090 0.91731 0.91502 0.85680 0.92844 0.95248 0.89230 0.94580 0.93171 0.95716 0.91034 0.92527 0.90579 0.91700 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.42 9.91 37.16 0.37 -1.05 16 2 C -0.12 -1.36 5.83 -26.73 -0.16 -1.52 16 3 C -0.11 -1.35 4.92 -26.73 -0.13 -1.49 16 4 C 0.10 1.44 2.48 -26.69 -0.07 1.37 16 5 H 0.07 1.02 7.71 -51.93 -0.40 0.62 16 6 C -0.15 -2.29 4.79 -26.59 -0.13 -2.41 16 7 C 0.09 1.62 2.65 -67.53 -0.18 1.44 16 8 H 0.05 1.08 7.56 -51.93 -0.39 0.68 16 9 N -0.68 -13.51 4.22 -100.77 -0.43 -13.93 16 10 C 0.22 5.15 1.80 -68.87 -0.12 5.02 16 11 H 0.03 0.87 7.23 -51.93 -0.38 0.49 16 12 C -0.55 -14.37 8.18 -34.44 -0.28 -14.65 16 13 H 0.05 1.35 7.77 -52.49 -0.41 0.94 16 14 C 0.07 1.84 5.29 -17.82 -0.09 1.74 16 15 N -0.88 -24.69 11.29 55.43 0.63 -24.06 16 16 Si 0.89 20.94 29.54 -169.99 -5.02 15.92 16 17 H -0.28 -6.57 7.11 56.52 0.40 -6.17 16 18 H -0.29 -6.74 7.11 56.52 0.40 -6.34 16 19 H -0.28 -6.51 7.11 56.52 0.40 -6.11 16 20 C -0.11 -2.48 5.45 -26.73 -0.15 -2.63 16 21 C -0.14 -2.77 9.85 37.16 0.37 -2.41 16 22 C -0.14 -2.32 5.74 -26.59 -0.15 -2.47 16 23 C 0.07 1.12 6.68 37.21 0.25 1.37 16 24 O -0.39 -6.09 9.94 -35.23 -0.35 -6.44 16 25 H 0.05 0.47 8.14 -51.93 -0.42 0.05 16 26 H 0.05 0.46 8.14 -51.93 -0.42 0.03 16 27 H 0.05 0.44 8.14 -51.93 -0.42 0.01 16 28 H 0.06 0.67 8.14 -51.93 -0.42 0.25 16 29 H 0.07 0.83 7.83 -51.93 -0.41 0.43 16 30 H 0.06 0.79 8.14 -51.93 -0.42 0.37 16 31 H 0.07 0.79 8.14 -51.93 -0.42 0.37 16 32 H 0.06 0.96 8.14 -51.93 -0.42 0.53 16 33 H 0.07 1.01 8.07 -51.93 -0.42 0.59 16 34 H 0.33 6.49 8.00 -39.29 -0.31 6.18 16 35 H 0.26 7.03 8.31 -40.82 -0.34 6.69 16 36 H 0.03 0.68 8.14 -51.93 -0.42 0.26 16 37 H 0.09 2.36 5.95 -51.94 -0.31 2.05 16 38 H 0.04 0.72 8.14 -51.93 -0.42 0.30 16 39 H 0.05 0.96 6.87 -51.93 -0.36 0.60 16 40 H 0.02 0.45 8.14 -51.92 -0.42 0.02 16 41 H 0.07 1.29 7.50 -51.93 -0.39 0.90 16 42 H 0.06 0.89 8.14 -51.93 -0.42 0.47 16 43 H 0.08 1.05 8.14 -51.93 -0.42 0.63 16 44 H 0.06 1.08 6.98 -51.93 -0.36 0.72 16 LS Contribution 337.38 15.07 5.08 5.08 Total: -1.00 -26.64 337.38 -8.90 -35.55 By element: Atomic # 1 Polarization: 13.91 SS G_CDS: -8.34 Total: 5.57 kcal Atomic # 6 Polarization: -17.21 SS G_CDS: -0.48 Total: -17.68 kcal Atomic # 7 Polarization: -38.20 SS G_CDS: 0.20 Total: -38.00 kcal Atomic # 8 Polarization: -6.09 SS G_CDS: -0.35 Total: -6.44 kcal Atomic # 14 Polarization: 20.94 SS G_CDS: -5.02 Total: 15.92 kcal Total LS contribution 5.08 Total: 5.08 kcal Total: -26.64 -8.90 -35.55 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000069890998.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -45.485 kcal (2) G-P(sol) polarization free energy of solvation -26.642 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -72.127 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.903 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.545 kcal (6) G-S(sol) free energy of system = (1) + (5) -81.030 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.39 seconds