Wall clock time and date at job start Mon Mar 30 2020 06:36:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.53009 * 109.47036 * 2 1 4 4 C 1.52992 * 109.47093 * 180.02562 * 3 2 1 5 5 H 1.08996 * 109.49402 * 54.97043 * 4 3 2 6 6 C 1.53097 * 109.48234 * 175.00053 * 4 3 2 7 7 C 1.53167 * 109.16617 * 177.58927 * 6 4 3 8 8 H 1.08997 * 109.54502 * 183.06209 * 7 6 4 9 9 N 1.46909 * 109.54274 * 62.88870 * 7 6 4 10 10 C 1.46903 * 111.00036 * 153.91824 * 9 7 6 11 11 H 1.09001 * 109.47065 * 36.91905 * 10 9 7 12 12 C 1.50692 * 109.46995 * 276.91671 * 10 9 7 13 13 H 1.08000 * 120.00272 * 359.97438 * 12 10 9 14 14 C 1.37881 * 119.99931 * 180.02562 * 12 10 9 15 15 N 1.31516 * 119.99852 * 359.97438 * 14 12 10 16 16 Si 1.86801 * 120.00013 * 180.02562 * 14 12 10 17 17 H 1.48503 * 109.47272 * 59.99564 * 16 14 12 18 18 H 1.48500 * 109.46954 * 179.97438 * 16 14 12 19 19 H 1.48501 * 109.47015 * 299.99732 * 16 14 12 20 20 C 1.52994 * 109.47172 * 156.91429 * 10 9 7 21 21 C 1.52999 * 109.47236 * 294.91822 * 20 10 9 22 22 C 1.53172 * 109.04005 * 303.02329 * 7 6 4 23 23 C 1.53095 * 109.16572 * 56.97490 * 22 7 6 24 24 O 1.42893 * 109.41365 * 302.39651 * 23 22 7 25 25 H 1.09003 * 109.47094 * 299.99985 * 1 2 3 26 26 H 1.08998 * 109.47431 * 60.00188 * 1 2 3 27 27 H 1.08998 * 109.46884 * 180.02562 * 1 2 3 28 28 H 1.09005 * 109.47275 * 240.00525 * 2 1 3 29 29 H 1.08998 * 109.47431 * 119.99812 * 2 1 3 30 30 H 1.09005 * 109.46660 * 60.00148 * 3 2 1 31 31 H 1.08998 * 109.46857 * 300.00164 * 3 2 1 32 32 H 1.09004 * 109.51924 * 57.68069 * 6 4 3 33 33 H 1.08995 * 109.51959 * 297.49982 * 6 4 3 34 34 H 1.00896 * 110.99905 * 29.96117 * 9 7 6 35 35 H 0.96996 * 119.99468 * 180.02562 * 15 14 12 36 36 H 1.09005 * 109.46880 * 54.91490 * 20 10 9 37 37 H 1.08989 * 109.47365 * 174.91457 * 20 10 9 38 38 H 1.08996 * 109.47476 * 295.49520 * 21 20 10 39 39 H 1.09006 * 109.47107 * 55.50058 * 21 20 10 40 40 H 1.09009 * 109.47293 * 175.49191 * 21 20 10 41 41 H 1.09006 * 109.52835 * 176.88979 * 22 7 6 42 42 H 1.09005 * 109.52213 * 297.07160 * 22 7 6 43 43 H 1.08998 * 109.48038 * 182.40690 * 23 22 7 44 44 H 1.09002 * 109.47805 * 62.37867 * 23 22 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 6 3.5699 1.4426 -0.0006 5 1 3.9333 0.8530 -0.8422 6 6 4.0805 2.8804 -0.1264 7 6 5.6109 2.8778 -0.0657 8 1 5.9790 3.9031 -0.1001 9 7 6.1467 2.1249 -1.2078 10 6 7.4992 2.5831 -1.5526 11 1 8.0430 2.8292 -0.6406 12 6 7.4071 3.8061 -2.4282 13 1 6.4407 4.2031 -2.7015 14 6 8.5568 4.4178 -2.8812 15 7 9.7338 3.9341 -2.5487 16 14 8.4428 5.9343 -3.9659 17 1 7.7265 7.0117 -3.2368 18 1 9.8100 6.3974 -4.3145 19 1 7.7012 5.5996 -5.2082 20 6 8.2379 1.4731 -2.3030 21 6 8.4430 0.2769 -1.3714 22 6 6.0581 2.2143 1.2404 23 6 5.4712 0.8022 1.3135 24 8 4.0471 0.8743 1.2207 25 1 -0.3633 0.5138 0.8900 26 1 -0.3634 0.5138 -0.8900 27 1 -0.3633 -1.0277 0.0005 28 1 1.8934 -0.5138 -0.8901 29 1 1.8934 -0.5138 0.8900 30 1 1.6766 1.9564 0.8901 31 1 1.6766 1.9564 -0.8900 32 1 3.6844 3.4805 0.6929 33 1 3.7543 3.3008 -1.0777 34 1 5.5297 2.1876 -2.0037 35 1 10.5425 4.3646 -2.8671 36 1 7.6490 1.1642 -3.1666 37 1 9.2068 1.8433 -2.6376 38 1 9.0980 0.5648 -0.5491 39 1 7.4799 -0.0434 -0.9738 40 1 8.8972 -0.5432 -1.9276 41 1 7.1464 2.1584 1.2667 42 1 5.7021 2.8009 2.0874 43 1 5.7509 0.3409 2.2605 44 1 5.8594 0.2042 0.4890 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000069890998.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:36:22 Heat of formation + Delta-G solvation = -95.183106 kcal Electronic energy + Delta-G solvation = -20381.215161 eV Core-core repulsion = 17524.443267 eV Total energy + Delta-G solvation = -2856.771894 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 255.194 amu Computer time = 0.45 seconds Orbital eigenvalues (eV) -40.63262 -37.80298 -35.79116 -34.99690 -33.44361 -32.03148 -31.07788 -28.24238 -27.43947 -24.92187 -24.60325 -23.32069 -21.84456 -21.35638 -20.20860 -18.63854 -17.28034 -16.94616 -16.76283 -16.19708 -15.69770 -15.54054 -15.30218 -14.73530 -14.49373 -14.43414 -13.85650 -13.67255 -13.34601 -13.30308 -13.03185 -12.99842 -12.87991 -12.59414 -12.55329 -12.31225 -12.15800 -12.04784 -11.76247 -11.53541 -11.50499 -11.38920 -11.32375 -11.09335 -10.81223 -10.44643 -10.23806 -9.01447 -8.05105 -6.27425 1.37676 1.38429 1.45615 2.39186 2.99974 3.14339 3.62311 3.79447 4.00446 4.12466 4.22876 4.28363 4.37320 4.48354 4.51237 4.61490 4.66921 4.76706 4.77828 4.87150 4.88538 4.92381 4.99010 5.05337 5.09519 5.15696 5.19299 5.21194 5.21623 5.34174 5.38056 5.45690 5.47941 5.53313 5.56660 5.64553 5.80148 6.12957 6.22209 6.39581 6.47080 6.83553 7.02741 7.44160 8.90575 Molecular weight = 255.19amu Principal moments of inertia in cm(-1) A = 0.024446 B = 0.005485 C = 0.004998 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1145.118433 B = 5103.430020 C = 5600.657971 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.120 4.120 3 C -0.107 4.107 4 C 0.101 3.899 5 H 0.056 0.944 6 C -0.141 4.141 7 C 0.086 3.914 8 H 0.017 0.983 9 N -0.667 5.667 10 C 0.226 3.774 11 H -0.001 1.001 12 C -0.559 4.559 13 H 0.048 0.952 14 C 0.021 3.979 15 N -0.910 5.910 16 Si 0.948 3.052 17 H -0.277 1.277 18 H -0.285 1.285 19 H -0.272 1.272 20 C -0.102 4.102 21 C -0.125 4.125 22 C -0.134 4.134 23 C 0.078 3.922 24 O -0.390 6.390 25 H 0.055 0.945 26 H 0.057 0.943 27 H 0.058 0.942 28 H 0.057 0.943 29 H 0.057 0.943 30 H 0.068 0.932 31 H 0.083 0.917 32 H 0.074 0.926 33 H 0.071 0.929 34 H 0.328 0.672 35 H 0.261 0.739 36 H 0.027 0.973 37 H 0.058 0.942 38 H 0.029 0.971 39 H 0.060 0.940 40 H 0.043 0.957 41 H 0.052 0.948 42 H 0.068 0.932 43 H 0.098 0.902 44 H 0.053 0.947 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.391 -6.087 5.369 15.659 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.157 4.157 3 C -0.145 4.145 4 C 0.043 3.957 5 H 0.074 0.926 6 C -0.179 4.179 7 C -0.024 4.024 8 H 0.036 0.964 9 N -0.297 5.297 10 C 0.117 3.883 11 H 0.017 0.983 12 C -0.598 4.598 13 H 0.066 0.934 14 C -0.179 4.179 15 N -0.549 5.549 16 Si 0.774 3.226 17 H -0.202 1.202 18 H -0.210 1.210 19 H -0.197 1.197 20 C -0.141 4.141 21 C -0.183 4.183 22 C -0.173 4.173 23 C 0.001 3.999 24 O -0.309 6.309 25 H 0.074 0.926 26 H 0.076 0.924 27 H 0.077 0.923 28 H 0.076 0.924 29 H 0.076 0.924 30 H 0.086 0.914 31 H 0.102 0.898 32 H 0.093 0.907 33 H 0.089 0.911 34 H 0.144 0.856 35 H 0.070 0.930 36 H 0.046 0.954 37 H 0.077 0.923 38 H 0.048 0.952 39 H 0.079 0.921 40 H 0.062 0.938 41 H 0.071 0.929 42 H 0.087 0.913 43 H 0.116 0.884 44 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges -13.095 -6.647 5.889 15.822 hybrid contribution 0.694 2.163 -1.284 2.609 sum -12.401 -4.483 4.605 13.968 Atomic orbital electron populations 1.21755 0.94872 1.01974 1.01976 1.21439 0.96370 0.96089 1.01821 1.21649 0.91775 0.98123 1.02909 1.22028 0.94627 0.92032 0.86975 0.92588 1.22314 0.94353 0.98589 1.02610 1.21375 0.94065 0.94707 0.92291 0.96442 1.60896 1.04152 1.56302 1.08356 1.18882 0.85906 0.90670 0.92834 0.98271 1.22158 0.92256 1.13198 1.32189 0.93375 1.25636 0.95251 0.99716 0.97314 1.69998 0.97725 1.41153 1.46066 0.85782 0.77063 0.80244 0.79535 1.20219 1.21005 1.19702 1.21345 1.00668 0.94936 0.97124 1.21584 1.00684 0.97301 0.98688 1.22056 1.00314 0.98249 0.96644 1.22386 0.80269 0.95301 1.01913 1.87798 1.21467 1.82554 1.39126 0.92619 0.92354 0.92272 0.92441 0.92421 0.91368 0.89833 0.90749 0.91082 0.85563 0.92968 0.95444 0.92310 0.95213 0.92077 0.93796 0.92880 0.91327 0.88422 0.92851 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.41 9.91 71.98 0.71 -1.69 16 2 C -0.12 -2.42 5.83 30.60 0.18 -2.25 16 3 C -0.11 -2.34 4.92 30.59 0.15 -2.19 16 4 C 0.10 2.76 2.48 30.62 0.08 2.83 16 5 H 0.06 1.66 7.71 -2.39 -0.02 1.64 16 6 C -0.14 -4.16 4.79 30.68 0.15 -4.01 16 7 C 0.09 3.15 2.65 45.03 0.12 3.27 16 8 H 0.02 0.76 7.56 -2.39 -0.02 0.74 16 9 N -0.67 -26.53 4.22 -472.72 -2.00 -28.53 16 10 C 0.23 11.01 1.80 44.16 0.08 11.09 16 11 H 0.00 -0.04 7.23 -2.39 -0.02 -0.05 16 12 C -0.56 -29.91 8.18 25.60 0.21 -29.70 16 13 H 0.05 2.55 7.77 -2.91 -0.02 2.52 16 14 C 0.02 1.14 5.29 84.66 0.45 1.59 16 15 N -0.91 -51.88 11.29 21.45 0.24 -51.64 16 16 Si 0.95 43.23 29.54 68.60 2.03 45.26 16 17 H -0.28 -12.44 7.11 99.48 0.71 -11.73 16 18 H -0.28 -12.80 7.11 99.48 0.71 -12.09 16 19 H -0.27 -12.08 7.11 99.48 0.71 -11.37 16 20 C -0.10 -4.83 5.45 30.59 0.17 -4.67 16 21 C -0.13 -4.96 9.85 71.98 0.71 -4.25 16 22 C -0.13 -4.46 5.74 30.68 0.18 -4.29 16 23 C 0.08 2.31 6.68 72.01 0.48 2.79 16 24 O -0.39 -11.52 9.94 -148.98 -1.48 -13.00 16 25 H 0.05 0.86 8.14 -2.39 -0.02 0.84 16 26 H 0.06 0.87 8.14 -2.39 -0.02 0.85 16 27 H 0.06 0.87 8.14 -2.39 -0.02 0.85 16 28 H 0.06 1.18 8.14 -2.38 -0.02 1.16 16 29 H 0.06 1.29 7.83 -2.39 -0.02 1.28 16 30 H 0.07 1.47 8.14 -2.38 -0.02 1.45 16 31 H 0.08 1.63 8.14 -2.39 -0.02 1.61 16 32 H 0.07 2.07 8.14 -2.38 -0.02 2.05 16 33 H 0.07 2.04 8.07 -2.39 -0.02 2.02 16 34 H 0.33 12.95 8.00 -89.70 -0.72 12.23 16 35 H 0.26 14.27 8.31 -92.71 -0.77 13.50 16 36 H 0.03 1.27 8.14 -2.38 -0.02 1.25 16 37 H 0.06 3.17 5.95 -2.39 -0.01 3.15 16 38 H 0.03 1.18 8.14 -2.39 -0.02 1.17 16 39 H 0.06 2.27 6.87 -2.38 -0.02 2.25 16 40 H 0.04 1.55 8.14 -2.38 -0.02 1.53 16 41 H 0.05 1.95 7.50 -2.38 -0.02 1.93 16 42 H 0.07 2.10 8.14 -2.38 -0.02 2.08 16 43 H 0.10 2.49 8.14 -2.39 -0.02 2.47 16 44 H 0.05 1.72 6.98 -2.39 -0.02 1.70 16 Total: -1.00 -57.01 337.38 2.67 -54.35 By element: Atomic # 1 Polarization: 24.81 SS G_CDS: 0.22 Total: 25.03 kcal Atomic # 6 Polarization: -35.13 SS G_CDS: 3.65 Total: -31.47 kcal Atomic # 7 Polarization: -78.41 SS G_CDS: -1.75 Total: -80.16 kcal Atomic # 8 Polarization: -11.52 SS G_CDS: -1.48 Total: -13.00 kcal Atomic # 14 Polarization: 43.23 SS G_CDS: 2.03 Total: 45.26 kcal Total: -57.01 2.67 -54.35 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000069890998.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -40.837 kcal (2) G-P(sol) polarization free energy of solvation -57.011 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -97.849 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.665 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -54.346 kcal (6) G-S(sol) free energy of system = (1) + (5) -95.183 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.45 seconds