Wall clock time and date at job start Mon Mar 30 2020 06:36:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53008 * 1 3 3 C 1.52996 * 109.47106 * 2 1 4 4 C 1.52999 * 109.46712 * 179.97438 * 3 2 1 5 5 H 1.08994 * 109.48674 * 304.97783 * 4 3 2 6 6 C 1.53101 * 109.48784 * 184.94822 * 4 3 2 7 7 C 1.53179 * 109.16125 * 182.40671 * 6 4 3 8 8 H 1.08999 * 109.61239 * 176.88985 * 7 6 4 9 9 N 1.46905 * 109.54353 * 297.11083 * 7 6 4 10 10 C 1.46893 * 111.00022 * 208.69460 * 9 7 6 11 11 H 1.09002 * 109.46938 * 321.01876 * 10 9 7 12 12 C 1.50696 * 109.47141 * 201.02000 * 10 9 7 13 13 H 1.08000 * 120.00046 * 355.66257 * 12 10 9 14 14 C 1.37879 * 120.00488 * 175.65929 * 12 10 9 15 15 N 1.31517 * 119.99790 * 353.90255 * 14 12 10 16 16 Si 1.86797 * 120.00302 * 173.89649 * 14 12 10 17 17 H 1.48503 * 109.47223 * 180.02562 * 16 14 12 18 18 H 1.48499 * 109.47162 * 300.00390 * 16 14 12 19 19 H 1.48503 * 109.46752 * 60.00646 * 16 14 12 20 20 C 1.52994 * 109.47333 * 81.01711 * 10 9 7 21 21 C 1.53001 * 109.47284 * 62.21615 * 20 10 9 22 22 C 1.53177 * 109.03814 * 56.97881 * 7 6 4 23 23 C 1.53084 * 109.16310 * 303.01978 * 22 7 6 24 24 O 1.42903 * 109.47972 * 65.00547 * 4 3 2 25 25 H 1.09000 * 109.47124 * 300.00037 * 1 2 3 26 26 H 1.09001 * 109.46921 * 59.99837 * 1 2 3 27 27 H 1.08997 * 109.47290 * 179.97438 * 1 2 3 28 28 H 1.09000 * 109.47124 * 239.99963 * 2 1 3 29 29 H 1.09004 * 109.46553 * 119.99806 * 2 1 3 30 30 H 1.09000 * 109.47159 * 59.99984 * 3 2 1 31 31 H 1.08992 * 109.47189 * 299.99756 * 3 2 1 32 32 H 1.08998 * 109.51944 * 62.49546 * 6 4 3 33 33 H 1.09001 * 109.51880 * 302.31431 * 6 4 3 34 34 H 1.00896 * 110.99417 * 84.73891 * 9 7 6 35 35 H 0.97000 * 119.99839 * 354.25743 * 15 14 12 36 36 H 1.09002 * 109.47564 * 182.21631 * 20 10 9 37 37 H 1.08998 * 109.47237 * 302.21734 * 20 10 9 38 38 H 1.09006 * 109.46993 * 65.14437 * 21 20 10 39 39 H 1.09000 * 109.47434 * 185.14504 * 21 20 10 40 40 H 1.09003 * 109.47000 * 305.14922 * 21 20 10 41 41 H 1.09006 * 109.51950 * 62.92843 * 22 7 6 42 42 H 1.08998 * 109.52322 * 183.04957 * 22 7 6 43 43 H 1.09004 * 109.48010 * 177.58762 * 23 22 7 44 44 H 1.09001 * 109.48250 * 297.62211 * 23 22 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 6 3.5701 1.4424 0.0006 5 1 3.9333 0.8534 0.8428 6 6 4.0809 2.8803 0.1251 7 6 5.6114 2.8771 0.0645 8 1 5.9810 3.9020 0.0970 9 7 6.1470 2.1252 1.2073 10 6 7.4740 2.6248 1.5910 11 1 8.0431 2.8700 0.6942 12 6 8.2031 1.5637 2.3741 13 1 7.7033 0.6406 2.6278 14 6 9.5084 1.7713 2.7668 15 7 10.1562 2.8401 2.3573 16 14 10.3567 0.5346 3.8804 17 1 11.7447 0.9857 4.1545 18 1 9.6101 0.4266 5.1596 19 1 10.3895 -0.7916 3.2129 20 6 7.3170 3.8783 2.4540 21 6 6.5661 3.5223 3.7387 22 6 6.0584 2.2124 -1.2411 23 6 5.4713 0.8004 -1.3128 24 8 4.0471 0.8729 -1.2201 25 1 -0.3633 0.5138 0.8900 26 1 -0.3633 0.5139 -0.8900 27 1 -0.3634 -1.0276 -0.0005 28 1 1.8934 -0.5138 -0.8900 29 1 1.8933 -0.5138 0.8901 30 1 1.6767 1.9563 0.8900 31 1 1.6768 1.9563 -0.8899 32 1 3.7547 3.3016 1.0760 33 1 3.6850 3.4796 -0.6947 34 1 6.1766 1.1366 1.0076 35 1 9.7461 3.4389 1.7137 36 1 8.3019 4.2717 2.7060 37 1 6.7553 4.6317 1.9018 38 1 7.1701 2.8382 4.3348 39 1 6.3740 4.4301 4.3107 40 1 5.6194 3.0450 3.4857 41 1 5.7026 2.7984 -2.0886 42 1 7.1467 2.1571 -1.2677 43 1 5.7508 0.3381 -2.2595 44 1 5.8593 0.2030 -0.4878 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000069890999.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:36:25 Heat of formation + Delta-G solvation = -79.894265 kcal Electronic energy + Delta-G solvation = -20427.127322 eV Core-core repulsion = 17571.018402 eV Total energy + Delta-G solvation = -2856.108920 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 255.194 amu Computer time = 0.42 seconds Orbital eigenvalues (eV) -39.61610 -36.48528 -34.88612 -33.64189 -31.25577 -31.06891 -29.30271 -27.02806 -25.24737 -23.82662 -23.41210 -22.44454 -20.93789 -19.95055 -18.39058 -17.10545 -16.26991 -15.76035 -14.93136 -14.62668 -14.49821 -14.16809 -13.86215 -13.66760 -13.32016 -12.83147 -12.71674 -12.65958 -12.29341 -12.07626 -11.57239 -11.43617 -11.26250 -11.21900 -10.95860 -10.83061 -10.81328 -10.61075 -10.57002 -10.15848 -10.11329 -9.98705 -9.84761 -9.68480 -9.01522 -8.47493 -8.38375 -7.39032 -6.35840 -4.07642 3.41971 3.44284 3.62331 3.99962 4.50329 4.77114 4.99418 5.04906 5.12990 5.17882 5.30984 5.33879 5.38796 5.42929 5.49895 5.60600 5.72751 5.78541 5.86119 5.90665 5.96081 6.06042 6.14981 6.21560 6.27680 6.28442 6.34133 6.40470 6.43199 6.44594 6.50114 6.65006 6.97750 7.06434 7.27170 7.46410 7.50305 7.54137 7.87508 8.10215 8.49642 8.56251 8.85553 9.62491 11.00207 Molecular weight = 255.19amu Principal moments of inertia in cm(-1) A = 0.025270 B = 0.005252 C = 0.005195 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1107.757028 B = 5329.624926 C = 5388.189105 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C -0.123 4.123 3 C -0.109 4.109 4 C 0.092 3.908 5 H 0.066 0.934 6 C -0.132 4.132 7 C 0.082 3.918 8 H 0.072 0.928 9 N -0.673 5.673 10 C 0.205 3.795 11 H -0.010 1.010 12 C -0.591 4.591 13 H 0.052 0.948 14 C 0.024 3.976 15 N -0.910 5.910 16 Si 1.063 2.937 17 H -0.283 1.283 18 H -0.287 1.287 19 H -0.289 1.289 20 C -0.106 4.106 21 C -0.118 4.118 22 C -0.183 4.183 23 C 0.065 3.935 24 O -0.384 6.384 25 H 0.051 0.949 26 H 0.051 0.949 27 H 0.051 0.949 28 H 0.067 0.933 29 H 0.060 0.940 30 H 0.073 0.927 31 H 0.065 0.935 32 H 0.075 0.925 33 H 0.060 0.940 34 H 0.332 0.668 35 H 0.270 0.730 36 H 0.059 0.941 37 H 0.018 0.982 38 H 0.056 0.944 39 H 0.015 0.985 40 H 0.051 0.949 41 H 0.065 0.935 42 H 0.072 0.928 43 H 0.087 0.913 44 H 0.053 0.947 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.706 -2.389 -5.380 14.917 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.160 4.160 3 C -0.147 4.147 4 C 0.034 3.966 5 H 0.084 0.916 6 C -0.170 4.170 7 C -0.029 4.029 8 H 0.090 0.910 9 N -0.305 5.305 10 C 0.097 3.903 11 H 0.008 0.992 12 C -0.629 4.629 13 H 0.070 0.930 14 C -0.180 4.180 15 N -0.547 5.547 16 Si 0.891 3.109 17 H -0.209 1.209 18 H -0.214 1.214 19 H -0.216 1.216 20 C -0.145 4.145 21 C -0.175 4.175 22 C -0.222 4.222 23 C -0.012 4.012 24 O -0.303 6.303 25 H 0.070 0.930 26 H 0.070 0.930 27 H 0.070 0.930 28 H 0.086 0.914 29 H 0.078 0.922 30 H 0.092 0.908 31 H 0.084 0.916 32 H 0.093 0.907 33 H 0.079 0.921 34 H 0.151 0.849 35 H 0.081 0.919 36 H 0.078 0.922 37 H 0.036 0.964 38 H 0.075 0.925 39 H 0.034 0.966 40 H 0.070 0.930 41 H 0.083 0.917 42 H 0.091 0.909 43 H 0.105 0.895 44 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges -12.745 -2.359 -4.201 13.625 hybrid contribution -0.543 0.163 -1.418 1.527 sum -13.288 -2.196 -5.619 14.593 Atomic orbital electron populations 1.21781 0.96309 1.01289 1.01494 1.21485 0.95162 0.96926 1.02459 1.21622 0.93444 0.97325 1.02267 1.22095 0.93619 0.93781 0.87071 0.91575 1.22163 0.96011 0.96910 1.01945 1.21572 0.94019 0.98390 0.88886 0.90995 1.60730 1.28350 1.06951 1.34420 1.19224 0.84051 0.93825 0.93233 0.99246 1.21907 0.99050 1.03042 1.38915 0.93018 1.25667 0.94515 0.99253 0.98585 1.70786 1.40783 1.13098 1.30009 0.83638 0.76280 0.74877 0.76092 1.20888 1.21398 1.21606 1.21499 0.98969 0.97216 0.96821 1.21411 1.00469 0.98466 0.97191 1.22789 1.01589 0.97832 0.99996 1.22462 0.80978 0.96097 1.01639 1.87835 1.20834 1.82576 1.39105 0.92951 0.92969 0.93022 0.91392 0.92162 0.90837 0.91640 0.90674 0.92148 0.84883 0.91869 0.92212 0.96378 0.92521 0.96567 0.93014 0.91662 0.90928 0.89480 0.92885 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.41 9.91 37.16 0.37 -1.04 16 2 C -0.12 -1.37 5.83 -26.73 -0.16 -1.53 16 3 C -0.11 -1.30 4.92 -26.73 -0.13 -1.43 16 4 C 0.09 1.32 2.42 -26.68 -0.06 1.25 16 5 H 0.07 1.04 7.48 -51.93 -0.39 0.66 16 6 C -0.13 -1.97 5.12 -26.59 -0.14 -2.11 16 7 C 0.08 1.43 2.65 -67.53 -0.18 1.25 16 8 H 0.07 1.34 6.83 -51.93 -0.35 0.98 16 9 N -0.67 -13.54 4.83 -100.77 -0.49 -14.03 16 10 C 0.20 4.91 1.77 -68.87 -0.12 4.78 16 11 H -0.01 -0.26 6.83 -51.93 -0.35 -0.62 16 12 C -0.59 -15.69 7.25 -34.44 -0.25 -15.94 16 13 H 0.05 1.39 7.73 -52.49 -0.41 0.98 16 14 C 0.02 0.67 5.26 -17.82 -0.09 0.58 16 15 N -0.91 -26.52 12.84 55.43 0.71 -25.80 16 16 Si 1.06 24.65 29.91 -169.99 -5.08 19.57 16 17 H -0.28 -6.65 7.11 56.52 0.40 -6.25 16 18 H -0.29 -6.45 7.11 56.52 0.40 -6.05 16 19 H -0.29 -6.45 7.11 56.52 0.40 -6.04 16 20 C -0.11 -2.48 5.43 -26.73 -0.15 -2.63 16 21 C -0.12 -2.59 9.46 37.16 0.35 -2.24 16 22 C -0.18 -2.93 5.72 -26.60 -0.15 -3.08 16 23 C 0.07 0.98 6.59 37.20 0.25 1.23 16 24 O -0.38 -5.87 9.94 -35.23 -0.35 -6.22 16 25 H 0.05 0.46 8.14 -51.93 -0.42 0.04 16 26 H 0.05 0.46 8.14 -51.93 -0.42 0.04 16 27 H 0.05 0.44 8.14 -51.93 -0.42 0.02 16 28 H 0.07 0.82 7.82 -51.93 -0.41 0.41 16 29 H 0.06 0.69 8.14 -51.93 -0.42 0.26 16 30 H 0.07 0.81 8.14 -51.93 -0.42 0.39 16 31 H 0.06 0.77 8.14 -51.93 -0.42 0.35 16 32 H 0.07 1.14 8.14 -51.93 -0.42 0.72 16 33 H 0.06 0.84 8.14 -51.93 -0.42 0.42 16 34 H 0.33 6.75 5.58 -39.29 -0.22 6.53 16 35 H 0.27 7.86 6.07 -40.82 -0.25 7.61 16 36 H 0.06 1.54 6.24 -51.93 -0.32 1.21 16 37 H 0.02 0.39 7.16 -51.93 -0.37 0.01 16 38 H 0.06 1.35 7.35 -51.93 -0.38 0.97 16 39 H 0.02 0.31 8.14 -51.93 -0.42 -0.12 16 40 H 0.05 1.09 7.52 -51.93 -0.39 0.70 16 41 H 0.06 0.97 8.14 -51.93 -0.42 0.54 16 42 H 0.07 1.28 7.68 -51.93 -0.40 0.88 16 43 H 0.09 1.16 8.14 -51.93 -0.42 0.74 16 44 H 0.05 0.85 6.41 -51.93 -0.33 0.52 16 LS Contribution 331.45 15.07 4.99 4.99 Total: -1.00 -27.79 331.45 -8.70 -36.49 By element: Atomic # 1 Polarization: 13.93 SS G_CDS: -8.02 Total: 5.90 kcal Atomic # 6 Polarization: -20.44 SS G_CDS: -0.47 Total: -20.91 kcal Atomic # 7 Polarization: -40.06 SS G_CDS: 0.22 Total: -39.83 kcal Atomic # 8 Polarization: -5.87 SS G_CDS: -0.35 Total: -6.22 kcal Atomic # 14 Polarization: 24.65 SS G_CDS: -5.08 Total: 19.57 kcal Total LS contribution 4.99 Total: 4.99 kcal Total: -27.79 -8.70 -36.49 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000069890999.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -43.400 kcal (2) G-P(sol) polarization free energy of solvation -27.792 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -71.192 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.702 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.495 kcal (6) G-S(sol) free energy of system = (1) + (5) -79.894 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.42 seconds