Wall clock time and date at job start Mon Mar 30 2020 06:36:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53008 * 1 3 3 C 1.52996 * 109.47106 * 2 1 4 4 C 1.52999 * 109.46712 * 179.97438 * 3 2 1 5 5 H 1.08994 * 109.48674 * 304.97783 * 4 3 2 6 6 C 1.53101 * 109.48784 * 184.94822 * 4 3 2 7 7 C 1.53179 * 109.16125 * 182.40671 * 6 4 3 8 8 H 1.08999 * 109.61239 * 176.88985 * 7 6 4 9 9 N 1.46905 * 109.54353 * 297.11083 * 7 6 4 10 10 C 1.46893 * 111.00022 * 208.69460 * 9 7 6 11 11 H 1.09002 * 109.46938 * 321.01876 * 10 9 7 12 12 C 1.50696 * 109.47141 * 201.02000 * 10 9 7 13 13 H 1.08000 * 120.00046 * 355.66257 * 12 10 9 14 14 C 1.37879 * 120.00488 * 175.65929 * 12 10 9 15 15 N 1.31517 * 119.99790 * 353.90255 * 14 12 10 16 16 Si 1.86797 * 120.00302 * 173.89649 * 14 12 10 17 17 H 1.48503 * 109.47223 * 180.02562 * 16 14 12 18 18 H 1.48499 * 109.47162 * 300.00390 * 16 14 12 19 19 H 1.48503 * 109.46752 * 60.00646 * 16 14 12 20 20 C 1.52994 * 109.47333 * 81.01711 * 10 9 7 21 21 C 1.53001 * 109.47284 * 62.21615 * 20 10 9 22 22 C 1.53177 * 109.03814 * 56.97881 * 7 6 4 23 23 C 1.53084 * 109.16310 * 303.01978 * 22 7 6 24 24 O 1.42903 * 109.47972 * 65.00547 * 4 3 2 25 25 H 1.09000 * 109.47124 * 300.00037 * 1 2 3 26 26 H 1.09001 * 109.46921 * 59.99837 * 1 2 3 27 27 H 1.08997 * 109.47290 * 179.97438 * 1 2 3 28 28 H 1.09000 * 109.47124 * 239.99963 * 2 1 3 29 29 H 1.09004 * 109.46553 * 119.99806 * 2 1 3 30 30 H 1.09000 * 109.47159 * 59.99984 * 3 2 1 31 31 H 1.08992 * 109.47189 * 299.99756 * 3 2 1 32 32 H 1.08998 * 109.51944 * 62.49546 * 6 4 3 33 33 H 1.09001 * 109.51880 * 302.31431 * 6 4 3 34 34 H 1.00896 * 110.99417 * 84.73891 * 9 7 6 35 35 H 0.97000 * 119.99839 * 354.25743 * 15 14 12 36 36 H 1.09002 * 109.47564 * 182.21631 * 20 10 9 37 37 H 1.08998 * 109.47237 * 302.21734 * 20 10 9 38 38 H 1.09006 * 109.46993 * 65.14437 * 21 20 10 39 39 H 1.09000 * 109.47434 * 185.14504 * 21 20 10 40 40 H 1.09003 * 109.47000 * 305.14922 * 21 20 10 41 41 H 1.09006 * 109.51950 * 62.92843 * 22 7 6 42 42 H 1.08998 * 109.52322 * 183.04957 * 22 7 6 43 43 H 1.09004 * 109.48010 * 177.58762 * 23 22 7 44 44 H 1.09001 * 109.48250 * 297.62211 * 23 22 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 6 3.5701 1.4424 0.0006 5 1 3.9333 0.8534 0.8428 6 6 4.0809 2.8803 0.1251 7 6 5.6114 2.8771 0.0645 8 1 5.9810 3.9020 0.0970 9 7 6.1470 2.1252 1.2073 10 6 7.4740 2.6248 1.5910 11 1 8.0431 2.8700 0.6942 12 6 8.2031 1.5637 2.3741 13 1 7.7033 0.6406 2.6278 14 6 9.5084 1.7713 2.7668 15 7 10.1562 2.8401 2.3573 16 14 10.3567 0.5346 3.8804 17 1 11.7447 0.9857 4.1545 18 1 9.6101 0.4266 5.1596 19 1 10.3895 -0.7916 3.2129 20 6 7.3170 3.8783 2.4540 21 6 6.5661 3.5223 3.7387 22 6 6.0584 2.2124 -1.2411 23 6 5.4713 0.8004 -1.3128 24 8 4.0471 0.8729 -1.2201 25 1 -0.3633 0.5138 0.8900 26 1 -0.3633 0.5139 -0.8900 27 1 -0.3634 -1.0276 -0.0005 28 1 1.8934 -0.5138 -0.8900 29 1 1.8933 -0.5138 0.8901 30 1 1.6767 1.9563 0.8900 31 1 1.6768 1.9563 -0.8899 32 1 3.7547 3.3016 1.0760 33 1 3.6850 3.4796 -0.6947 34 1 6.1766 1.1366 1.0076 35 1 9.7461 3.4389 1.7137 36 1 8.3019 4.2717 2.7060 37 1 6.7553 4.6317 1.9018 38 1 7.1701 2.8382 4.3348 39 1 6.3740 4.4301 4.3107 40 1 5.6194 3.0450 3.4857 41 1 5.7026 2.7984 -2.0886 42 1 7.1467 2.1571 -1.2677 43 1 5.7508 0.3381 -2.2595 44 1 5.8593 0.2030 -0.4878 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000069890999.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:36:25 Heat of formation + Delta-G solvation = -95.218310 kcal Electronic energy + Delta-G solvation = -20427.791822 eV Core-core repulsion = 17571.018402 eV Total energy + Delta-G solvation = -2856.773420 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 255.194 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -40.92095 -38.15320 -35.94375 -35.24541 -33.14970 -32.19128 -30.94061 -28.18021 -27.08063 -25.47260 -24.99490 -23.56438 -21.90407 -21.70435 -19.91014 -19.02950 -17.40587 -17.11688 -16.32737 -16.29296 -15.71657 -15.53868 -15.40165 -15.27484 -14.75970 -14.38742 -14.18609 -13.80870 -13.70993 -13.23417 -13.05933 -13.02076 -12.64040 -12.61419 -12.41671 -12.30723 -12.11770 -11.96508 -11.87094 -11.79853 -11.69383 -11.52164 -11.46565 -11.09557 -10.53634 -10.43063 -10.27254 -9.10265 -8.55088 -6.26826 1.54030 1.60373 1.79242 2.57893 2.83783 3.22419 3.47706 3.71136 3.86727 3.97819 3.98945 4.18700 4.19166 4.33194 4.38288 4.45764 4.48996 4.56929 4.67991 4.74239 4.75678 4.81622 4.84595 4.88623 4.95618 5.01135 5.08329 5.11472 5.14111 5.23448 5.24517 5.32781 5.39824 5.41781 5.52384 5.55580 5.69387 5.91909 6.12064 6.30402 6.50919 6.62245 6.82578 7.51351 8.81165 Molecular weight = 255.19amu Principal moments of inertia in cm(-1) A = 0.025270 B = 0.005252 C = 0.005195 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1107.757028 B = 5329.624926 C = 5388.189105 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.122 4.122 3 C -0.104 4.104 4 C 0.092 3.908 5 H 0.050 0.950 6 C -0.123 4.123 7 C 0.078 3.922 8 H 0.058 0.942 9 N -0.665 5.665 10 C 0.211 3.789 11 H -0.042 1.042 12 C -0.593 4.593 13 H 0.047 0.953 14 C -0.022 4.022 15 N -0.935 5.935 16 Si 1.105 2.895 17 H -0.288 1.288 18 H -0.274 1.274 19 H -0.273 1.273 20 C -0.101 4.101 21 C -0.107 4.107 22 C -0.176 4.176 23 C 0.068 3.932 24 O -0.385 6.385 25 H 0.058 0.942 26 H 0.057 0.943 27 H 0.058 0.942 28 H 0.056 0.944 29 H 0.054 0.946 30 H 0.085 0.915 31 H 0.071 0.929 32 H 0.076 0.924 33 H 0.076 0.924 34 H 0.330 0.670 35 H 0.258 0.742 36 H 0.031 0.969 37 H 0.032 0.968 38 H 0.033 0.967 39 H 0.039 0.961 40 H 0.059 0.941 41 H 0.082 0.918 42 H 0.050 0.950 43 H 0.108 0.892 44 H 0.040 0.960 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.614 -2.916 -5.377 16.769 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.159 4.159 3 C -0.141 4.141 4 C 0.034 3.966 5 H 0.068 0.932 6 C -0.161 4.161 7 C -0.032 4.032 8 H 0.076 0.924 9 N -0.297 5.297 10 C 0.102 3.898 11 H -0.024 1.024 12 C -0.631 4.631 13 H 0.065 0.935 14 C -0.221 4.221 15 N -0.573 5.573 16 Si 0.929 3.071 17 H -0.214 1.214 18 H -0.199 1.199 19 H -0.199 1.199 20 C -0.140 4.140 21 C -0.164 4.164 22 C -0.216 4.216 23 C -0.009 4.009 24 O -0.305 6.305 25 H 0.077 0.923 26 H 0.076 0.924 27 H 0.077 0.923 28 H 0.075 0.925 29 H 0.073 0.927 30 H 0.103 0.897 31 H 0.090 0.910 32 H 0.094 0.906 33 H 0.095 0.905 34 H 0.149 0.851 35 H 0.068 0.932 36 H 0.050 0.950 37 H 0.051 0.949 38 H 0.052 0.948 39 H 0.058 0.942 40 H 0.078 0.922 41 H 0.100 0.900 42 H 0.069 0.931 43 H 0.126 0.874 44 H 0.058 0.942 Dipole moment (debyes) X Y Z Total from point charges -14.687 -2.888 -4.210 15.549 hybrid contribution 0.013 0.349 -1.473 1.513 sum -14.673 -2.539 -5.682 15.939 Atomic orbital electron populations 1.21750 0.94682 1.01996 1.02092 1.21457 0.96580 0.96220 1.01661 1.21615 0.91331 0.98049 1.03135 1.22154 0.95307 0.92855 0.86241 0.93220 1.22100 0.93632 0.97713 1.02700 1.21662 0.95782 0.97220 0.88569 0.92410 1.60690 1.25819 1.07015 1.36159 1.19023 0.85306 0.93671 0.91824 1.02419 1.22170 0.99219 1.03324 1.38405 0.93503 1.26927 0.95690 1.00010 0.99503 1.70897 1.41218 1.14166 1.31039 0.83072 0.75173 0.73623 0.75265 1.21400 1.19914 1.19857 1.21390 0.97875 0.97079 0.97666 1.21292 0.99929 0.99075 0.96150 1.22703 1.00259 0.98795 0.99827 1.22456 0.81023 0.95169 1.02219 1.87850 1.20575 1.82611 1.39443 0.92272 0.92436 0.92338 0.92484 0.92717 0.89660 0.90995 0.90554 0.90504 0.85075 0.93191 0.95048 0.94922 0.94817 0.94197 0.92210 0.89983 0.93103 0.87446 0.94230 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.38 9.91 71.98 0.71 -1.67 16 2 C -0.12 -2.48 5.83 30.60 0.18 -2.30 16 3 C -0.10 -2.23 4.92 30.59 0.15 -2.08 16 4 C 0.09 2.48 2.42 30.63 0.07 2.55 16 5 H 0.05 1.52 7.48 -2.39 -0.02 1.50 16 6 C -0.12 -3.45 5.12 30.69 0.16 -3.30 16 7 C 0.08 2.67 2.65 45.03 0.12 2.79 16 8 H 0.06 2.14 6.83 -2.39 -0.02 2.12 16 9 N -0.67 -26.81 4.83 -472.72 -2.29 -29.09 16 10 C 0.21 10.30 1.77 44.17 0.08 10.37 16 11 H -0.04 -2.27 6.83 -2.39 -0.02 -2.29 16 12 C -0.59 -31.89 7.25 25.60 0.19 -31.71 16 13 H 0.05 2.52 7.73 -2.91 -0.02 2.50 16 14 C -0.02 -1.24 5.26 84.65 0.45 -0.80 16 15 N -0.94 -55.80 12.84 21.45 0.28 -55.53 16 16 Si 1.11 49.63 29.91 68.60 2.05 51.68 16 17 H -0.29 -13.11 7.11 99.48 0.71 -12.40 16 18 H -0.27 -11.60 7.11 99.48 0.71 -10.89 16 19 H -0.27 -11.45 7.11 99.48 0.71 -10.75 16 20 C -0.10 -4.77 5.43 30.59 0.17 -4.60 16 21 C -0.11 -4.60 9.46 71.98 0.68 -3.92 16 22 C -0.18 -5.57 5.72 30.68 0.18 -5.39 16 23 C 0.07 1.99 6.59 72.01 0.47 2.46 16 24 O -0.39 -11.10 9.94 -148.98 -1.48 -12.58 16 25 H 0.06 0.88 8.14 -2.39 -0.02 0.86 16 26 H 0.06 0.87 8.14 -2.39 -0.02 0.85 16 27 H 0.06 0.86 8.14 -2.39 -0.02 0.84 16 28 H 0.06 1.28 7.82 -2.39 -0.02 1.26 16 29 H 0.05 1.16 8.14 -2.38 -0.02 1.14 16 30 H 0.08 1.64 8.14 -2.39 -0.02 1.62 16 31 H 0.07 1.47 8.14 -2.39 -0.02 1.45 16 32 H 0.08 2.14 8.14 -2.39 -0.02 2.12 16 33 H 0.08 1.93 8.14 -2.39 -0.02 1.91 16 34 H 0.33 13.51 5.58 -89.70 -0.50 13.01 16 35 H 0.26 15.61 6.07 -92.71 -0.56 15.05 16 36 H 0.03 1.64 6.24 -2.39 -0.01 1.63 16 37 H 0.03 1.41 7.16 -2.39 -0.02 1.39 16 38 H 0.03 1.57 7.35 -2.38 -0.02 1.56 16 39 H 0.04 1.50 8.14 -2.39 -0.02 1.48 16 40 H 0.06 2.44 7.52 -2.39 -0.02 2.43 16 41 H 0.08 2.31 8.14 -2.38 -0.02 2.29 16 42 H 0.05 1.82 7.68 -2.39 -0.02 1.80 16 43 H 0.11 2.68 8.14 -2.38 -0.02 2.66 16 44 H 0.04 1.26 6.41 -2.39 -0.02 1.24 16 Total: -1.00 -59.53 331.45 2.81 -56.71 By element: Atomic # 1 Polarization: 25.75 SS G_CDS: 0.65 Total: 26.40 kcal Atomic # 6 Polarization: -41.19 SS G_CDS: 3.60 Total: -37.59 kcal Atomic # 7 Polarization: -82.61 SS G_CDS: -2.01 Total: -84.62 kcal Atomic # 8 Polarization: -11.10 SS G_CDS: -1.48 Total: -12.58 kcal Atomic # 14 Polarization: 49.63 SS G_CDS: 2.05 Total: 51.68 kcal Total: -59.53 2.81 -56.71 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000069890999.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -38.504 kcal (2) G-P(sol) polarization free energy of solvation -59.525 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -98.030 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.811 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -56.714 kcal (6) G-S(sol) free energy of system = (1) + (5) -95.218 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.48 seconds