Wall clock time and date at job start Mon Mar 30 2020 06:36:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.52997 * 109.47381 * 2 1 4 4 C 1.52996 * 109.47381 * 179.97438 * 3 2 1 5 5 H 1.08999 * 109.47839 * 55.00467 * 4 3 2 6 6 C 1.53093 * 109.48116 * 175.02709 * 4 3 2 7 7 C 1.53173 * 109.16465 * 177.58102 * 6 4 3 8 8 H 1.09005 * 109.60833 * 62.94220 * 7 6 4 9 9 N 1.46897 * 109.54783 * 183.16064 * 7 6 4 10 10 C 1.46901 * 111.00466 * 206.40688 * 9 7 6 11 11 H 1.08995 * 109.46993 * 325.78410 * 10 9 7 12 12 C 1.50692 * 109.47426 * 205.77954 * 10 9 7 13 13 H 1.08001 * 120.00061 * 359.97438 * 12 10 9 14 14 C 1.37877 * 120.00192 * 180.02562 * 12 10 9 15 15 N 1.31517 * 119.99871 * 0.02562 * 14 12 10 16 16 Si 1.86800 * 120.00190 * 180.02562 * 14 12 10 17 17 H 1.48494 * 109.47138 * 89.99818 * 16 14 12 18 18 H 1.48501 * 109.47078 * 210.00100 * 16 14 12 19 19 H 1.48504 * 109.47271 * 329.99961 * 16 14 12 20 20 C 1.53007 * 109.46644 * 85.77947 * 10 9 7 21 21 C 1.53000 * 109.46817 * 59.62714 * 20 10 9 22 22 C 1.53184 * 109.04517 * 303.03739 * 7 6 4 23 23 C 1.53087 * 109.16236 * 56.97203 * 22 7 6 24 24 O 1.42901 * 109.41815 * 302.39362 * 23 22 7 25 25 H 1.08994 * 109.47236 * 299.99811 * 1 2 3 26 26 H 1.09002 * 109.47239 * 60.00020 * 1 2 3 27 27 H 1.09005 * 109.46921 * 179.97438 * 1 2 3 28 28 H 1.08997 * 109.47313 * 120.00471 * 2 1 3 29 29 H 1.09004 * 109.47052 * 240.00171 * 2 1 3 30 30 H 1.08997 * 109.47282 * 300.00491 * 3 2 1 31 31 H 1.09004 * 109.46888 * 60.00070 * 3 2 1 32 32 H 1.09007 * 109.52150 * 297.49928 * 6 4 3 33 33 H 1.09000 * 109.52213 * 57.68366 * 6 4 3 34 34 H 1.00904 * 111.00140 * 82.45399 * 9 7 6 35 35 H 0.96996 * 119.99807 * 180.02562 * 15 14 12 36 36 H 1.09005 * 109.46585 * 179.62229 * 20 10 9 37 37 H 1.08998 * 109.47406 * 299.62492 * 20 10 9 38 38 H 1.09000 * 109.47071 * 56.34098 * 21 20 10 39 39 H 1.09005 * 109.46840 * 176.34021 * 21 20 10 40 40 H 1.08993 * 109.47156 * 296.33928 * 21 20 10 41 41 H 1.08998 * 109.51810 * 297.06185 * 22 7 6 42 42 H 1.09001 * 109.57343 * 176.91069 * 22 7 6 43 43 H 1.09002 * 109.47758 * 182.40883 * 23 22 7 44 44 H 1.09007 * 109.49161 * 62.38552 * 23 22 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 6 3.5700 1.4424 0.0006 5 1 3.9338 0.8530 -0.8409 6 6 4.0806 2.8803 -0.1245 7 6 5.6111 2.8776 -0.0623 8 1 6.0106 2.3201 -0.9095 9 7 6.1072 4.2596 -0.1055 10 6 7.4647 4.3144 -0.6641 11 1 8.0153 3.4212 -0.3691 12 6 8.1739 5.5371 -0.1416 13 1 7.6667 6.2068 0.5372 14 6 9.4699 5.8015 -0.5309 15 7 10.0870 4.9868 -1.3586 16 14 10.3492 7.3167 0.1173 17 1 11.0600 6.9761 1.3758 18 1 11.3297 7.7900 -0.8925 19 1 9.3568 8.3888 0.3840 20 6 7.3857 4.3840 -2.1905 21 6 6.6047 5.6329 -2.6043 22 6 6.0571 2.2136 1.2441 23 6 5.4701 0.8016 1.3161 24 8 4.0460 0.8737 1.2221 25 1 -0.3633 0.5138 0.8899 26 1 -0.3634 0.5138 -0.8900 27 1 -0.3633 -1.0277 -0.0005 28 1 1.8933 -0.5139 0.8899 29 1 1.8933 -0.5138 -0.8900 30 1 1.6767 1.9563 -0.8899 31 1 1.6767 1.9563 0.8900 32 1 3.7552 3.3009 -1.0760 33 1 3.6839 3.4802 0.6946 34 1 6.0752 4.6841 0.8093 35 1 10.9988 5.1726 -1.6322 36 1 8.3929 4.4314 -2.6046 37 1 6.8787 3.4964 -2.5689 38 1 7.0754 6.5157 -2.1716 39 1 6.6039 5.7174 -3.6911 40 1 5.5786 5.5553 -2.2452 41 1 5.7005 2.8000 2.0909 42 1 7.1453 2.1577 1.2724 43 1 5.7490 0.3399 2.2633 44 1 5.8591 0.2036 0.4919 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000069891000.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:36:28 Heat of formation + Delta-G solvation = -79.779634 kcal Electronic energy + Delta-G solvation = -20021.776205 eV Core-core repulsion = 17165.672256 eV Total energy + Delta-G solvation = -2856.103949 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 255.194 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -39.41928 -36.40829 -34.91945 -33.48245 -31.32778 -31.06942 -29.35335 -27.02994 -25.75840 -23.37680 -23.03258 -22.32393 -20.88876 -19.93358 -18.89370 -16.48194 -16.34354 -15.62856 -15.00487 -14.73520 -14.45290 -14.05956 -13.98195 -13.49049 -13.34389 -12.91901 -12.66251 -12.57153 -12.15444 -11.87230 -11.78770 -11.42113 -11.22455 -10.95686 -10.94165 -10.84379 -10.80058 -10.65140 -10.53530 -10.34586 -10.20605 -9.86812 -9.66856 -9.41526 -9.17588 -8.77442 -8.47520 -7.20222 -6.02960 -4.08359 3.27966 3.35277 3.38744 3.95079 4.38756 4.67015 4.98016 5.04727 5.15644 5.19764 5.29477 5.31469 5.32528 5.43757 5.56451 5.63310 5.74672 5.78420 5.79527 5.85519 5.98908 6.06597 6.14209 6.20745 6.23772 6.31080 6.40308 6.53002 6.57772 6.66455 6.67875 6.86453 7.23219 7.33176 7.45052 7.49730 7.73845 7.79218 7.84634 8.26851 8.40509 8.67796 9.01761 9.56609 11.02879 Molecular weight = 255.19amu Principal moments of inertia in cm(-1) A = 0.037364 B = 0.004445 C = 0.004233 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 749.213614 B = 6297.532316 C = 6612.677456 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C -0.123 4.123 3 C -0.110 4.110 4 C 0.090 3.910 5 H 0.053 0.947 6 C -0.133 4.133 7 C 0.089 3.911 8 H 0.068 0.932 9 N -0.679 5.679 10 C 0.216 3.784 11 H 0.000 1.000 12 C -0.512 4.512 13 H 0.058 0.942 14 C 0.063 3.937 15 N -0.889 5.889 16 Si 0.892 3.108 17 H -0.282 1.282 18 H -0.287 1.287 19 H -0.274 1.274 20 C -0.103 4.103 21 C -0.119 4.119 22 C -0.182 4.182 23 C 0.067 3.933 24 O -0.383 6.383 25 H 0.053 0.947 26 H 0.052 0.948 27 H 0.051 0.949 28 H 0.068 0.932 29 H 0.057 0.943 30 H 0.074 0.926 31 H 0.069 0.931 32 H 0.073 0.927 33 H 0.066 0.934 34 H 0.331 0.669 35 H 0.260 0.740 36 H 0.086 0.914 37 H 0.008 0.992 38 H 0.055 0.945 39 H 0.012 0.988 40 H 0.041 0.959 41 H 0.067 0.933 42 H 0.074 0.926 43 H 0.087 0.913 44 H 0.046 0.954 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.909 -8.286 2.251 15.504 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.160 4.160 3 C -0.147 4.147 4 C 0.032 3.968 5 H 0.071 0.929 6 C -0.172 4.172 7 C -0.022 4.022 8 H 0.087 0.913 9 N -0.308 5.308 10 C 0.109 3.891 11 H 0.018 0.982 12 C -0.551 4.551 13 H 0.076 0.924 14 C -0.139 4.139 15 N -0.528 5.528 16 Si 0.720 3.280 17 H -0.208 1.208 18 H -0.213 1.213 19 H -0.199 1.199 20 C -0.141 4.141 21 C -0.176 4.176 22 C -0.222 4.222 23 C -0.010 4.010 24 O -0.302 6.302 25 H 0.072 0.928 26 H 0.071 0.929 27 H 0.070 0.930 28 H 0.087 0.913 29 H 0.076 0.924 30 H 0.093 0.907 31 H 0.088 0.912 32 H 0.092 0.908 33 H 0.085 0.915 34 H 0.148 0.852 35 H 0.070 0.930 36 H 0.104 0.896 37 H 0.027 0.973 38 H 0.074 0.926 39 H 0.032 0.968 40 H 0.061 0.939 41 H 0.086 0.914 42 H 0.092 0.908 43 H 0.105 0.895 44 H 0.064 0.936 Dipole moment (debyes) X Y Z Total from point charges -13.144 -8.196 1.678 15.580 hybrid contribution 1.437 0.563 0.830 1.752 sum -11.707 -7.633 2.509 14.199 Atomic orbital electron populations 1.21781 0.96209 1.01299 1.01643 1.21487 0.95296 0.96922 1.02311 1.21622 0.93144 0.97284 1.02665 1.22156 0.94090 0.93762 0.86801 0.92892 1.22199 0.96406 0.95721 1.02853 1.21530 0.93752 0.91579 0.95348 0.91345 1.60755 1.27966 1.13575 1.28538 1.19121 0.82389 0.95848 0.91746 0.98238 1.21194 0.97618 1.08745 1.27509 0.92372 1.24886 0.97353 0.96601 0.95024 1.69883 1.12455 1.36970 1.33482 0.86588 0.79521 0.83340 0.78512 1.20839 1.21253 1.19861 1.21449 1.00532 0.94164 0.98004 1.21442 0.99787 1.00081 0.96334 1.22944 1.01761 0.97154 1.00322 1.22483 0.80862 0.96352 1.01322 1.87851 1.21054 1.82490 1.38795 0.92817 0.92926 0.93033 0.91338 0.92385 0.90729 0.91247 0.90810 0.91517 0.85155 0.92981 0.89559 0.97350 0.92567 0.96847 0.93945 0.91416 0.90775 0.89528 0.93612 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.31 9.91 37.16 0.37 -0.94 16 2 C -0.12 -1.25 5.83 -26.73 -0.16 -1.41 16 3 C -0.11 -1.23 4.92 -26.73 -0.13 -1.36 16 4 C 0.09 1.21 2.64 -26.69 -0.07 1.14 16 5 H 0.05 0.71 8.14 -51.93 -0.42 0.29 16 6 C -0.13 -2.01 5.03 -26.59 -0.13 -2.14 16 7 C 0.09 1.56 2.35 -67.53 -0.16 1.41 16 8 H 0.07 1.30 7.18 -51.93 -0.37 0.93 16 9 N -0.68 -13.95 5.35 -100.76 -0.54 -14.49 16 10 C 0.22 5.28 2.11 -68.86 -0.15 5.13 16 11 H 0.00 0.00 7.29 -51.93 -0.38 -0.38 16 12 C -0.51 -13.58 7.28 -34.44 -0.25 -13.83 16 13 H 0.06 1.54 7.61 -52.49 -0.40 1.14 16 14 C 0.06 1.71 5.30 -17.82 -0.09 1.61 16 15 N -0.89 -24.97 11.31 55.43 0.63 -24.34 16 16 Si 0.89 21.05 29.54 -169.99 -5.02 16.03 16 17 H -0.28 -6.62 7.11 56.52 0.40 -6.22 16 18 H -0.29 -6.76 7.11 56.52 0.40 -6.36 16 19 H -0.27 -6.41 7.11 56.52 0.40 -6.00 16 20 C -0.10 -2.49 5.57 -26.73 -0.15 -2.63 16 21 C -0.12 -2.67 9.52 37.16 0.35 -2.32 16 22 C -0.18 -2.94 5.39 -26.59 -0.14 -3.08 16 23 C 0.07 0.94 6.84 37.20 0.25 1.19 16 24 O -0.38 -5.56 9.94 -35.23 -0.35 -5.91 16 25 H 0.05 0.45 8.14 -51.93 -0.42 0.03 16 26 H 0.05 0.42 8.14 -51.93 -0.42 0.00 16 27 H 0.05 0.40 8.14 -51.93 -0.42 -0.02 16 28 H 0.07 0.76 7.82 -51.93 -0.41 0.35 16 29 H 0.06 0.58 8.14 -51.93 -0.42 0.15 16 30 H 0.07 0.77 8.14 -51.93 -0.42 0.34 16 31 H 0.07 0.80 8.14 -51.93 -0.42 0.38 16 32 H 0.07 1.12 8.14 -51.92 -0.42 0.70 16 33 H 0.07 1.02 8.14 -51.93 -0.42 0.60 16 34 H 0.33 6.80 7.89 -39.29 -0.31 6.49 16 35 H 0.26 7.01 8.31 -40.82 -0.34 6.67 16 36 H 0.09 2.32 6.06 -51.93 -0.31 2.01 16 37 H 0.01 0.18 7.51 -51.93 -0.39 -0.21 16 38 H 0.06 1.36 7.10 -51.93 -0.37 0.99 16 39 H 0.01 0.26 8.14 -51.93 -0.42 -0.16 16 40 H 0.04 0.90 7.71 -51.93 -0.40 0.50 16 41 H 0.07 1.09 8.08 -51.93 -0.42 0.67 16 42 H 0.07 1.31 7.63 -51.93 -0.40 0.91 16 43 H 0.09 1.07 8.14 -51.93 -0.42 0.65 16 44 H 0.05 0.62 8.14 -51.93 -0.42 0.20 16 LS Contribution 338.07 15.07 5.09 5.09 Total: -1.00 -27.21 338.07 -9.01 -36.22 By element: Atomic # 1 Polarization: 13.00 SS G_CDS: -8.36 Total: 4.63 kcal Atomic # 6 Polarization: -16.78 SS G_CDS: -0.46 Total: -17.24 kcal Atomic # 7 Polarization: -38.92 SS G_CDS: 0.09 Total: -38.83 kcal Atomic # 8 Polarization: -5.56 SS G_CDS: -0.35 Total: -5.91 kcal Atomic # 14 Polarization: 21.05 SS G_CDS: -5.02 Total: 16.03 kcal Total LS contribution 5.09 Total: 5.09 kcal Total: -27.21 -9.01 -36.22 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000069891000.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -43.558 kcal (2) G-P(sol) polarization free energy of solvation -27.211 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -70.770 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.010 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.221 kcal (6) G-S(sol) free energy of system = (1) + (5) -79.780 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds