Wall clock time and date at job start Mon Mar 30 2020 06:36:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.52997 * 109.47381 * 2 1 4 4 C 1.52996 * 109.47381 * 179.97438 * 3 2 1 5 5 H 1.08999 * 109.47839 * 55.00467 * 4 3 2 6 6 C 1.53093 * 109.48116 * 175.02709 * 4 3 2 7 7 C 1.53173 * 109.16465 * 177.58102 * 6 4 3 8 8 H 1.09005 * 109.60833 * 62.94220 * 7 6 4 9 9 N 1.46897 * 109.54783 * 183.16064 * 7 6 4 10 10 C 1.46901 * 111.00466 * 206.40688 * 9 7 6 11 11 H 1.08995 * 109.46993 * 325.78410 * 10 9 7 12 12 C 1.50692 * 109.47426 * 205.77954 * 10 9 7 13 13 H 1.08001 * 120.00061 * 359.97438 * 12 10 9 14 14 C 1.37877 * 120.00192 * 180.02562 * 12 10 9 15 15 N 1.31517 * 119.99871 * 0.02562 * 14 12 10 16 16 Si 1.86800 * 120.00190 * 180.02562 * 14 12 10 17 17 H 1.48494 * 109.47138 * 89.99818 * 16 14 12 18 18 H 1.48501 * 109.47078 * 210.00100 * 16 14 12 19 19 H 1.48504 * 109.47271 * 329.99961 * 16 14 12 20 20 C 1.53007 * 109.46644 * 85.77947 * 10 9 7 21 21 C 1.53000 * 109.46817 * 59.62714 * 20 10 9 22 22 C 1.53184 * 109.04517 * 303.03739 * 7 6 4 23 23 C 1.53087 * 109.16236 * 56.97203 * 22 7 6 24 24 O 1.42901 * 109.41815 * 302.39362 * 23 22 7 25 25 H 1.08994 * 109.47236 * 299.99811 * 1 2 3 26 26 H 1.09002 * 109.47239 * 60.00020 * 1 2 3 27 27 H 1.09005 * 109.46921 * 179.97438 * 1 2 3 28 28 H 1.08997 * 109.47313 * 120.00471 * 2 1 3 29 29 H 1.09004 * 109.47052 * 240.00171 * 2 1 3 30 30 H 1.08997 * 109.47282 * 300.00491 * 3 2 1 31 31 H 1.09004 * 109.46888 * 60.00070 * 3 2 1 32 32 H 1.09007 * 109.52150 * 297.49928 * 6 4 3 33 33 H 1.09000 * 109.52213 * 57.68366 * 6 4 3 34 34 H 1.00904 * 111.00140 * 82.45399 * 9 7 6 35 35 H 0.96996 * 119.99807 * 180.02562 * 15 14 12 36 36 H 1.09005 * 109.46585 * 179.62229 * 20 10 9 37 37 H 1.08998 * 109.47406 * 299.62492 * 20 10 9 38 38 H 1.09000 * 109.47071 * 56.34098 * 21 20 10 39 39 H 1.09005 * 109.46840 * 176.34021 * 21 20 10 40 40 H 1.08993 * 109.47156 * 296.33928 * 21 20 10 41 41 H 1.08998 * 109.51810 * 297.06185 * 22 7 6 42 42 H 1.09001 * 109.57343 * 176.91069 * 22 7 6 43 43 H 1.09002 * 109.47758 * 182.40883 * 23 22 7 44 44 H 1.09007 * 109.49161 * 62.38552 * 23 22 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 6 3.5700 1.4424 0.0006 5 1 3.9338 0.8530 -0.8409 6 6 4.0806 2.8803 -0.1245 7 6 5.6111 2.8776 -0.0623 8 1 6.0106 2.3201 -0.9095 9 7 6.1072 4.2596 -0.1055 10 6 7.4647 4.3144 -0.6641 11 1 8.0153 3.4212 -0.3691 12 6 8.1739 5.5371 -0.1416 13 1 7.6667 6.2068 0.5372 14 6 9.4699 5.8015 -0.5309 15 7 10.0870 4.9868 -1.3586 16 14 10.3492 7.3167 0.1173 17 1 11.0600 6.9761 1.3758 18 1 11.3297 7.7900 -0.8925 19 1 9.3568 8.3888 0.3840 20 6 7.3857 4.3840 -2.1905 21 6 6.6047 5.6329 -2.6043 22 6 6.0571 2.2136 1.2441 23 6 5.4701 0.8016 1.3161 24 8 4.0460 0.8737 1.2221 25 1 -0.3633 0.5138 0.8899 26 1 -0.3634 0.5138 -0.8900 27 1 -0.3633 -1.0277 -0.0005 28 1 1.8933 -0.5139 0.8899 29 1 1.8933 -0.5138 -0.8900 30 1 1.6767 1.9563 -0.8899 31 1 1.6767 1.9563 0.8900 32 1 3.7552 3.3009 -1.0760 33 1 3.6839 3.4802 0.6946 34 1 6.0752 4.6841 0.8093 35 1 10.9988 5.1726 -1.6322 36 1 8.3929 4.4314 -2.6046 37 1 6.8787 3.4964 -2.5689 38 1 7.0754 6.5157 -2.1716 39 1 6.6039 5.7174 -3.6911 40 1 5.5786 5.5553 -2.2452 41 1 5.7005 2.8000 2.0909 42 1 7.1453 2.1577 1.2724 43 1 5.7490 0.3399 2.2633 44 1 5.8591 0.2036 0.4919 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000069891000.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:36:28 Heat of formation + Delta-G solvation = -94.832839 kcal Electronic energy + Delta-G solvation = -20022.428961 eV Core-core repulsion = 17165.672256 eV Total energy + Delta-G solvation = -2856.756705 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 255.194 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -40.65336 -38.06542 -35.87583 -35.15394 -33.21156 -32.14104 -30.98784 -28.37103 -27.35565 -25.18848 -24.41440 -23.44084 -21.84708 -21.33781 -20.69326 -18.37632 -17.42325 -16.96032 -16.88907 -15.89825 -15.68295 -15.42844 -15.32951 -15.13675 -14.69156 -14.48732 -13.92268 -13.70721 -13.67655 -13.50015 -12.97391 -12.83605 -12.68677 -12.50439 -12.41612 -12.25655 -12.16042 -12.07350 -11.82762 -11.78005 -11.52994 -11.43827 -11.32617 -11.03277 -10.81091 -10.54386 -10.39560 -8.93506 -8.10144 -6.22097 1.40425 1.42548 1.51973 2.41841 2.85922 3.18492 3.46993 3.84329 3.92962 4.00777 4.17125 4.22353 4.24068 4.34888 4.41704 4.52277 4.64118 4.73038 4.77382 4.78186 4.79059 4.85628 4.91728 4.96599 5.01312 5.09240 5.12553 5.24297 5.27225 5.32362 5.35805 5.42170 5.44726 5.53957 5.57969 5.71449 5.82741 5.90357 6.28340 6.32258 6.51857 6.81602 7.04466 7.46851 8.94817 Molecular weight = 255.19amu Principal moments of inertia in cm(-1) A = 0.037364 B = 0.004445 C = 0.004233 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 749.213614 B = 6297.532316 C = 6612.677456 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C -0.120 4.120 3 C -0.106 4.106 4 C 0.091 3.909 5 H 0.055 0.945 6 C -0.123 4.123 7 C 0.087 3.913 8 H 0.051 0.949 9 N -0.674 5.674 10 C 0.225 3.775 11 H -0.035 1.035 12 C -0.523 4.523 13 H 0.056 0.944 14 C 0.017 3.983 15 N -0.917 5.917 16 Si 0.953 3.047 17 H -0.278 1.278 18 H -0.286 1.286 19 H -0.268 1.268 20 C -0.100 4.100 21 C -0.107 4.107 22 C -0.176 4.176 23 C 0.071 3.929 24 O -0.387 6.387 25 H 0.054 0.946 26 H 0.058 0.942 27 H 0.059 0.941 28 H 0.057 0.943 29 H 0.060 0.940 30 H 0.087 0.913 31 H 0.067 0.933 32 H 0.075 0.925 33 H 0.066 0.934 34 H 0.331 0.669 35 H 0.260 0.740 36 H 0.057 0.943 37 H 0.017 0.983 38 H 0.035 0.965 39 H 0.032 0.968 40 H 0.052 0.948 41 H 0.068 0.932 42 H 0.052 0.948 43 H 0.107 0.893 44 H 0.049 0.951 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.443 -8.266 2.531 16.833 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.158 4.158 3 C -0.143 4.143 4 C 0.033 3.967 5 H 0.072 0.928 6 C -0.162 4.162 7 C -0.023 4.023 8 H 0.070 0.930 9 N -0.303 5.303 10 C 0.117 3.883 11 H -0.017 1.017 12 C -0.561 4.561 13 H 0.074 0.926 14 C -0.182 4.182 15 N -0.556 5.556 16 Si 0.779 3.221 17 H -0.204 1.204 18 H -0.211 1.211 19 H -0.193 1.193 20 C -0.138 4.138 21 C -0.164 4.164 22 C -0.215 4.215 23 C -0.006 4.006 24 O -0.306 6.306 25 H 0.073 0.927 26 H 0.078 0.922 27 H 0.078 0.922 28 H 0.076 0.924 29 H 0.079 0.921 30 H 0.105 0.895 31 H 0.086 0.914 32 H 0.093 0.907 33 H 0.085 0.915 34 H 0.148 0.852 35 H 0.069 0.931 36 H 0.075 0.925 37 H 0.035 0.965 38 H 0.054 0.946 39 H 0.051 0.949 40 H 0.071 0.929 41 H 0.087 0.913 42 H 0.071 0.929 43 H 0.125 0.875 44 H 0.068 0.932 Dipole moment (debyes) X Y Z Total from point charges -14.700 -8.183 1.967 16.938 hybrid contribution 1.904 0.515 0.739 2.107 sum -12.795 -7.668 2.706 15.161 Atomic orbital electron populations 1.21759 0.94891 1.02010 1.02033 1.21455 0.96438 0.95984 1.01913 1.21622 0.91248 0.98219 1.03204 1.22240 0.95605 0.92341 0.86540 0.92752 1.22106 0.93996 0.97146 1.02904 1.21592 0.95500 0.89770 0.95486 0.93033 1.60704 1.25453 1.15727 1.28453 1.18875 0.83744 0.93620 0.92106 1.01746 1.21459 0.98042 1.09240 1.27373 0.92594 1.25615 0.98159 0.99185 0.95275 1.70016 1.12642 1.38466 1.34494 0.85632 0.78380 0.80181 0.77902 1.20399 1.21127 1.19279 1.21334 0.99275 0.95527 0.97687 1.21299 0.99646 0.97995 0.97450 1.22831 1.00495 0.98778 0.99413 1.22494 0.80694 0.94769 1.02649 1.87864 1.21012 1.82417 1.39338 0.92722 0.92249 0.92219 0.92404 0.92140 0.89475 0.91402 0.90671 0.91531 0.85200 0.93060 0.92466 0.96464 0.94619 0.94938 0.92855 0.91306 0.92879 0.87531 0.93226 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.22 9.91 71.98 0.71 -1.51 16 2 C -0.12 -2.20 5.83 30.59 0.18 -2.02 16 3 C -0.11 -2.14 4.92 30.59 0.15 -1.99 16 4 C 0.09 2.28 2.64 30.62 0.08 2.36 16 5 H 0.05 1.37 8.14 -2.39 -0.02 1.35 16 6 C -0.12 -3.55 5.03 30.68 0.15 -3.39 16 7 C 0.09 3.05 2.35 45.04 0.11 3.15 16 8 H 0.05 1.98 7.18 -2.38 -0.02 1.96 16 9 N -0.67 -27.76 5.35 -472.70 -2.53 -30.30 16 10 C 0.23 11.18 2.11 44.17 0.09 11.28 16 11 H -0.03 -1.95 7.29 -2.39 -0.02 -1.97 16 12 C -0.52 -28.01 7.28 25.60 0.19 -27.83 16 13 H 0.06 2.96 7.61 -2.91 -0.02 2.94 16 14 C 0.02 0.91 5.30 84.65 0.45 1.36 16 15 N -0.92 -52.43 11.31 21.45 0.24 -52.19 16 16 Si 0.95 43.31 29.54 68.60 2.03 45.34 16 17 H -0.28 -12.39 7.11 99.48 0.71 -11.68 16 18 H -0.29 -12.85 7.11 99.48 0.71 -12.14 16 19 H -0.27 -11.87 7.11 99.48 0.71 -11.16 16 20 C -0.10 -4.85 5.57 30.60 0.17 -4.68 16 21 C -0.11 -4.70 9.52 71.98 0.69 -4.01 16 22 C -0.18 -5.65 5.39 30.68 0.17 -5.49 16 23 C 0.07 1.91 6.84 72.01 0.49 2.40 16 24 O -0.39 -10.58 9.94 -148.98 -1.48 -12.06 16 25 H 0.05 0.80 8.14 -2.39 -0.02 0.78 16 26 H 0.06 0.80 8.14 -2.39 -0.02 0.78 16 27 H 0.06 0.79 8.14 -2.38 -0.02 0.77 16 28 H 0.06 1.18 7.82 -2.39 -0.02 1.16 16 29 H 0.06 1.07 8.14 -2.39 -0.02 1.05 16 30 H 0.09 1.56 8.14 -2.39 -0.02 1.54 16 31 H 0.07 1.41 8.14 -2.39 -0.02 1.39 16 32 H 0.07 2.15 8.14 -2.38 -0.02 2.13 16 33 H 0.07 1.93 8.14 -2.39 -0.02 1.91 16 34 H 0.33 13.60 7.89 -89.69 -0.71 12.89 16 35 H 0.26 14.23 8.31 -92.71 -0.77 13.46 16 36 H 0.06 3.14 6.06 -2.38 -0.01 3.13 16 37 H 0.02 0.77 7.51 -2.39 -0.02 0.76 16 38 H 0.03 1.69 7.10 -2.39 -0.02 1.68 16 39 H 0.03 1.27 8.14 -2.38 -0.02 1.25 16 40 H 0.05 2.20 7.71 -2.39 -0.02 2.18 16 41 H 0.07 2.18 8.08 -2.39 -0.02 2.16 16 42 H 0.05 1.92 7.63 -2.39 -0.02 1.90 16 43 H 0.11 2.44 8.14 -2.39 -0.02 2.42 16 44 H 0.05 1.30 8.14 -2.38 -0.02 1.28 16 Total: -1.00 -57.75 338.07 2.11 -55.64 By element: Atomic # 1 Polarization: 23.71 SS G_CDS: 0.23 Total: 23.94 kcal Atomic # 6 Polarization: -33.99 SS G_CDS: 3.63 Total: -30.36 kcal Atomic # 7 Polarization: -80.19 SS G_CDS: -2.29 Total: -82.48 kcal Atomic # 8 Polarization: -10.58 SS G_CDS: -1.48 Total: -12.06 kcal Atomic # 14 Polarization: 43.31 SS G_CDS: 2.03 Total: 45.34 kcal Total: -57.75 2.11 -55.64 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000069891000.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -39.194 kcal (2) G-P(sol) polarization free energy of solvation -57.751 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -96.945 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.112 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -55.638 kcal (6) G-S(sol) free energy of system = (1) + (5) -94.833 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds