Wall clock time and date at job start Mon Mar 30 2020 07:24:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.52993 * 109.47326 * 2 1 4 4 C 1.52999 * 109.46989 * 120.00273 * 2 1 3 5 5 O 1.42901 * 109.46982 * 65.00129 * 4 2 1 6 6 C 1.42906 * 114.00056 * 180.02562 * 5 4 2 7 7 H 1.08997 * 112.84815 * 21.68344 * 6 5 4 8 8 C 1.53781 * 113.61082 * 250.49523 * 6 5 4 9 9 C 1.53786 * 87.07911 * 219.93200 * 8 6 5 10 10 H 1.09005 * 113.61311 * 270.79958 * 9 8 6 11 11 N 1.46898 * 113.61544 * 139.98174 * 9 8 6 12 12 C 1.46900 * 110.99926 * 104.50278 * 11 9 8 13 13 C 1.50699 * 109.46724 * 179.97438 * 12 11 9 14 14 H 1.07999 * 120.00803 * 0.02562 * 13 12 11 15 15 C 1.37881 * 119.99889 * 180.02562 * 13 12 11 16 16 N 1.31520 * 120.00186 * 180.02562 * 15 13 12 17 17 Si 1.86798 * 120.00030 * 0.02562 * 15 13 12 18 18 H 1.48506 * 109.47297 * 89.99863 * 17 15 13 19 19 H 1.48503 * 109.47261 * 330.00044 * 17 15 13 20 20 H 1.48500 * 109.47454 * 210.00037 * 17 15 13 21 21 C 1.53774 * 87.08044 * 25.43032 * 9 8 6 22 22 C 1.52998 * 113.61397 * 89.11569 * 21 9 8 23 23 C 1.52998 * 113.61599 * 220.02290 * 21 9 8 24 24 H 1.09000 * 109.47383 * 59.99649 * 1 2 3 25 25 H 1.09003 * 109.47420 * 180.02562 * 1 2 3 26 26 H 1.09003 * 109.46807 * 299.99810 * 1 2 3 27 27 H 1.09003 * 109.46807 * 240.00189 * 2 1 3 28 28 H 1.09003 * 109.47600 * 180.02562 * 3 2 1 29 29 H 1.08992 * 109.47369 * 300.00166 * 3 2 1 30 30 H 1.09003 * 109.47023 * 60.00322 * 3 2 1 31 31 H 1.08993 * 109.47684 * 304.99853 * 4 2 1 32 32 H 1.09002 * 109.47139 * 184.99577 * 4 2 1 33 33 H 1.09005 * 113.61936 * 105.38298 * 8 6 5 34 34 H 1.08997 * 113.61356 * 334.47494 * 8 6 5 35 35 H 1.00899 * 111.00214 * 340.55090 * 11 9 8 36 36 H 1.09004 * 109.47135 * 60.00123 * 12 11 9 37 37 H 1.08997 * 109.47656 * 299.99737 * 12 11 9 38 38 H 0.96998 * 120.00124 * 180.02562 * 16 15 13 39 39 H 1.09006 * 109.47109 * 60.00636 * 22 21 9 40 40 H 1.09002 * 109.47149 * 179.97438 * 22 21 9 41 41 H 1.08999 * 109.47567 * 300.00367 * 22 21 9 42 42 H 1.08997 * 109.47868 * 59.99966 * 23 21 9 43 43 H 1.09002 * 109.47190 * 180.02562 * 23 21 9 44 44 H 1.08999 * 109.46960 * 299.99669 * 23 21 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 6 2.0399 -0.7213 1.2492 5 8 1.6619 -2.0982 1.1919 6 6 2.0912 -2.8663 2.3179 7 1 2.2964 -2.2528 3.1952 8 6 3.2123 -3.8665 1.9899 9 6 2.4913 -4.8584 2.9179 10 1 2.8068 -4.7907 3.9591 11 7 2.4839 -6.2378 2.4128 12 6 3.4487 -7.0710 3.1428 13 6 3.4122 -8.4758 2.5984 14 1 2.7398 -8.7247 1.7907 15 6 4.2371 -9.4434 3.1316 16 7 4.2056 -10.6692 2.6563 17 14 5.3996 -9.0131 4.5291 18 1 4.7148 -9.2337 5.8283 19 1 5.8019 -7.5880 4.4174 20 1 6.6061 -9.8755 4.4528 21 6 1.1988 -4.0835 2.6123 22 6 0.4478 -4.6038 1.3850 23 6 0.2924 -3.8984 3.8309 24 1 -0.3634 0.5139 -0.8899 25 1 -0.3634 -1.0277 0.0005 26 1 -0.3633 0.5138 0.8900 27 1 1.8933 -0.5138 -0.8900 28 1 3.1300 1.4425 -0.0005 29 1 1.6767 1.9563 -0.8899 30 1 1.6767 1.9562 0.8900 31 1 1.6054 -0.2619 2.1370 32 1 3.1263 -0.6445 1.2951 33 1 4.1922 -3.5596 2.3557 34 1 3.2277 -4.1779 0.9455 35 1 2.6646 -6.2605 1.4204 36 1 3.1889 -7.0850 4.2013 37 1 4.4504 -6.6593 3.0199 38 1 4.7858 -11.3500 3.0316 39 1 0.1722 -5.6466 1.5429 40 1 -0.4530 -4.0096 1.2313 41 1 1.0889 -4.5264 0.5069 42 1 0.8286 -3.3452 4.6020 43 1 -0.5996 -3.3439 3.5394 44 1 0.0022 -4.8745 4.2194 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000082923059.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:24:09 Heat of formation + Delta-G solvation = -46.480752 kcal Electronic energy + Delta-G solvation = -19670.891365 eV Core-core repulsion = 16816.231363 eV Total energy + Delta-G solvation = -2854.660001 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 255.194 amu Computer time = 0.39 seconds Orbital eigenvalues (eV) -40.04759 -37.46383 -34.88831 -33.76740 -31.94205 -30.08462 -27.38683 -27.25193 -27.05932 -26.00163 -22.86741 -22.25837 -21.02955 -20.47239 -18.25828 -16.87381 -16.45438 -15.91217 -15.17503 -14.92461 -14.42476 -14.16033 -13.96544 -13.51935 -13.45670 -13.09508 -12.82407 -12.61019 -12.40715 -12.22663 -11.90417 -11.85946 -11.66630 -11.52312 -11.36596 -11.25044 -11.06557 -10.85682 -10.79785 -10.65226 -10.37541 -10.27251 -10.08065 -9.62838 -9.22231 -9.15833 -8.57830 -7.36532 -6.04704 -4.02384 3.29074 3.36158 3.38322 3.67878 4.42736 4.64111 4.65924 4.76656 4.79577 4.90744 4.99661 5.04994 5.25922 5.28275 5.31272 5.39079 5.44172 5.50504 5.55201 5.63766 5.64755 5.74397 5.77484 5.85838 5.91144 6.00320 6.08146 6.10657 6.16181 6.22219 6.28537 6.35862 6.51453 6.64791 6.79833 6.85361 7.06461 7.37980 7.62738 7.94651 8.37276 8.67149 9.03848 9.57441 11.08684 Molecular weight = 255.19amu Principal moments of inertia in cm(-1) A = 0.036563 B = 0.003997 C = 0.003904 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 765.619684 B = 7003.614595 C = 7170.641670 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C -0.096 4.096 3 C -0.146 4.146 4 C 0.065 3.935 5 O -0.365 6.365 6 C 0.069 3.931 7 H 0.079 0.921 8 C -0.186 4.186 9 C 0.077 3.923 10 H 0.089 0.911 11 N -0.661 5.661 12 C 0.164 3.836 13 C -0.515 4.515 14 H 0.079 0.921 15 C 0.068 3.932 16 N -0.901 5.901 17 Si 0.877 3.123 18 H -0.276 1.276 19 H -0.268 1.268 20 H -0.287 1.287 21 C -0.069 4.069 22 C -0.108 4.108 23 C -0.133 4.133 24 H 0.051 0.949 25 H 0.065 0.935 26 H 0.050 0.950 27 H 0.077 0.923 28 H 0.055 0.945 29 H 0.059 0.941 30 H 0.054 0.946 31 H 0.044 0.956 32 H 0.044 0.956 33 H 0.061 0.939 34 H 0.090 0.910 35 H 0.339 0.661 36 H 0.021 0.979 37 H -0.016 1.016 38 H 0.263 0.737 39 H 0.070 0.930 40 H 0.045 0.955 41 H 0.053 0.947 42 H 0.047 0.953 43 H 0.051 0.949 44 H 0.064 0.936 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.229 22.776 -1.866 23.443 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.114 4.114 3 C -0.203 4.203 4 C -0.012 4.012 5 O -0.284 6.284 6 C 0.011 3.989 7 H 0.097 0.903 8 C -0.226 4.226 9 C -0.035 4.035 10 H 0.107 0.893 11 N -0.290 5.290 12 C 0.036 3.964 13 C -0.553 4.553 14 H 0.097 0.903 15 C -0.134 4.134 16 N -0.540 5.540 17 Si 0.705 3.295 18 H -0.202 1.202 19 H -0.193 1.193 20 H -0.213 1.213 21 C -0.070 4.070 22 C -0.165 4.165 23 C -0.190 4.190 24 H 0.070 0.930 25 H 0.084 0.916 26 H 0.069 0.931 27 H 0.096 0.904 28 H 0.074 0.926 29 H 0.078 0.922 30 H 0.074 0.926 31 H 0.062 0.938 32 H 0.062 0.938 33 H 0.079 0.921 34 H 0.108 0.892 35 H 0.158 0.842 36 H 0.039 0.961 37 H 0.001 0.999 38 H 0.073 0.927 39 H 0.089 0.911 40 H 0.064 0.936 41 H 0.072 0.928 42 H 0.066 0.934 43 H 0.070 0.930 44 H 0.083 0.917 Dipole moment (debyes) X Y Z Total from point charges -5.781 22.288 -1.603 23.081 hybrid contribution 1.809 0.594 0.700 2.029 sum -3.972 22.882 -0.903 23.242 Atomic orbital electron populations 1.21773 0.94608 1.02588 1.01077 1.21088 0.96751 0.95413 0.98153 1.21786 1.01022 0.95490 1.02027 1.22557 0.98118 0.82964 0.97583 1.87948 1.78039 1.19326 1.43044 1.23768 0.96005 0.90700 0.88431 0.90307 1.24248 0.97898 0.98719 1.01733 1.22815 0.94154 0.88676 0.97863 0.89251 1.60306 1.54340 1.06131 1.08230 1.20022 0.88619 0.93383 0.94377 1.21078 1.22422 0.91804 1.20018 0.90291 1.24910 0.96826 0.94872 0.96753 1.69904 1.39592 1.02044 1.42460 0.86826 0.80910 0.78650 0.83126 1.20180 1.19297 1.21261 1.22264 0.95107 0.93112 0.96508 1.21222 0.98710 1.01173 0.95418 1.21704 0.98871 1.01899 0.96556 0.93030 0.91621 0.93096 0.90428 0.92613 0.92160 0.92640 0.93779 0.93819 0.92063 0.89157 0.84232 0.96114 0.99879 0.92682 0.91124 0.93596 0.92767 0.93379 0.93037 0.91686 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.28 9.09 37.16 0.34 -0.95 16 2 C -0.10 -0.87 3.16 -90.63 -0.29 -1.16 16 3 C -0.15 -1.05 9.19 37.15 0.34 -0.71 16 4 C 0.06 0.68 5.17 37.16 0.19 0.87 16 5 O -0.36 -4.78 8.99 -35.23 -0.32 -5.10 16 6 C 0.07 0.92 3.70 -25.92 -0.10 0.82 16 7 H 0.08 0.95 7.71 -51.93 -0.40 0.55 16 8 C -0.19 -2.77 7.19 -25.92 -0.19 -2.96 16 9 C 0.08 1.29 3.60 -66.90 -0.24 1.05 16 10 H 0.09 1.51 7.85 -51.93 -0.41 1.10 16 11 N -0.66 -13.59 5.57 -107.13 -0.60 -14.18 16 12 C 0.16 3.98 4.37 -4.98 -0.02 3.96 16 13 C -0.51 -14.81 9.87 -34.44 -0.34 -15.15 16 14 H 0.08 2.46 8.06 -52.49 -0.42 2.04 16 15 C 0.07 1.99 5.47 -17.82 -0.10 1.89 16 16 N -0.90 -27.89 13.96 55.43 0.77 -27.12 16 17 Si 0.88 21.73 27.47 -169.99 -4.67 17.06 16 18 H -0.28 -6.72 7.11 56.52 0.40 -6.32 16 19 H -0.27 -6.40 6.54 56.52 0.37 -6.03 16 20 H -0.29 -7.02 7.11 56.52 0.40 -6.62 16 21 C -0.07 -1.00 1.35 -153.70 -0.21 -1.20 16 22 C -0.11 -1.61 7.76 37.16 0.29 -1.32 16 23 C -0.13 -1.75 9.19 37.16 0.34 -1.40 16 24 H 0.05 0.40 8.14 -51.93 -0.42 -0.02 16 25 H 0.06 0.69 7.82 -51.93 -0.41 0.28 16 26 H 0.05 0.43 8.14 -51.93 -0.42 0.01 16 27 H 0.08 0.77 8.14 -51.93 -0.42 0.34 16 28 H 0.05 0.38 8.14 -51.93 -0.42 -0.04 16 29 H 0.06 0.39 8.14 -51.93 -0.42 -0.03 16 30 H 0.05 0.37 8.14 -51.93 -0.42 -0.05 16 31 H 0.04 0.43 8.14 -51.93 -0.42 0.01 16 32 H 0.04 0.44 8.14 -51.93 -0.42 0.02 16 33 H 0.06 0.87 8.14 -51.93 -0.42 0.45 16 34 H 0.09 1.41 7.34 -51.93 -0.38 1.03 16 35 H 0.34 6.89 8.04 -39.29 -0.32 6.58 16 36 H 0.02 0.51 7.55 -51.93 -0.39 0.12 16 37 H -0.02 -0.40 7.20 -51.93 -0.37 -0.78 16 38 H 0.26 7.62 8.31 -40.82 -0.34 7.28 16 39 H 0.07 1.16 7.77 -51.93 -0.40 0.75 16 40 H 0.04 0.63 8.14 -51.93 -0.42 0.21 16 41 H 0.05 0.83 7.19 -51.93 -0.37 0.45 16 42 H 0.05 0.57 7.94 -51.93 -0.41 0.15 16 43 H 0.05 0.62 8.14 -51.93 -0.42 0.19 16 44 H 0.06 0.92 8.14 -51.93 -0.42 0.50 16 LS Contribution 346.34 15.07 5.22 5.22 Total: -1.00 -30.13 346.34 -8.09 -38.23 By element: Atomic # 1 Polarization: 10.69 SS G_CDS: -8.53 Total: 2.16 kcal Atomic # 6 Polarization: -16.29 SS G_CDS: 0.03 Total: -16.26 kcal Atomic # 7 Polarization: -41.48 SS G_CDS: 0.18 Total: -41.31 kcal Atomic # 8 Polarization: -4.78 SS G_CDS: -0.32 Total: -5.10 kcal Atomic # 14 Polarization: 21.73 SS G_CDS: -4.67 Total: 17.06 kcal Total LS contribution 5.22 Total: 5.22 kcal Total: -30.13 -8.09 -38.23 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000082923059.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -8.255 kcal (2) G-P(sol) polarization free energy of solvation -30.132 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -38.388 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.093 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.226 kcal (6) G-S(sol) free energy of system = (1) + (5) -46.481 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.39 seconds