Wall clock time and date at job start Mon Mar 30 2020 07:24:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.52993 * 109.47326 * 2 1 4 4 C 1.52999 * 109.46989 * 120.00273 * 2 1 3 5 5 O 1.42901 * 109.46982 * 65.00129 * 4 2 1 6 6 C 1.42906 * 114.00056 * 180.02562 * 5 4 2 7 7 H 1.08997 * 112.84815 * 21.68344 * 6 5 4 8 8 C 1.53781 * 113.61082 * 250.49523 * 6 5 4 9 9 C 1.53786 * 87.07911 * 219.93200 * 8 6 5 10 10 H 1.09005 * 113.61311 * 270.79958 * 9 8 6 11 11 N 1.46898 * 113.61544 * 139.98174 * 9 8 6 12 12 C 1.46900 * 110.99926 * 104.50278 * 11 9 8 13 13 C 1.50699 * 109.46724 * 179.97438 * 12 11 9 14 14 H 1.07999 * 120.00803 * 0.02562 * 13 12 11 15 15 C 1.37881 * 119.99889 * 180.02562 * 13 12 11 16 16 N 1.31520 * 120.00186 * 180.02562 * 15 13 12 17 17 Si 1.86798 * 120.00030 * 0.02562 * 15 13 12 18 18 H 1.48506 * 109.47297 * 89.99863 * 17 15 13 19 19 H 1.48503 * 109.47261 * 330.00044 * 17 15 13 20 20 H 1.48500 * 109.47454 * 210.00037 * 17 15 13 21 21 C 1.53774 * 87.08044 * 25.43032 * 9 8 6 22 22 C 1.52998 * 113.61397 * 89.11569 * 21 9 8 23 23 C 1.52998 * 113.61599 * 220.02290 * 21 9 8 24 24 H 1.09000 * 109.47383 * 59.99649 * 1 2 3 25 25 H 1.09003 * 109.47420 * 180.02562 * 1 2 3 26 26 H 1.09003 * 109.46807 * 299.99810 * 1 2 3 27 27 H 1.09003 * 109.46807 * 240.00189 * 2 1 3 28 28 H 1.09003 * 109.47600 * 180.02562 * 3 2 1 29 29 H 1.08992 * 109.47369 * 300.00166 * 3 2 1 30 30 H 1.09003 * 109.47023 * 60.00322 * 3 2 1 31 31 H 1.08993 * 109.47684 * 304.99853 * 4 2 1 32 32 H 1.09002 * 109.47139 * 184.99577 * 4 2 1 33 33 H 1.09005 * 113.61936 * 105.38298 * 8 6 5 34 34 H 1.08997 * 113.61356 * 334.47494 * 8 6 5 35 35 H 1.00899 * 111.00214 * 340.55090 * 11 9 8 36 36 H 1.09004 * 109.47135 * 60.00123 * 12 11 9 37 37 H 1.08997 * 109.47656 * 299.99737 * 12 11 9 38 38 H 0.96998 * 120.00124 * 180.02562 * 16 15 13 39 39 H 1.09006 * 109.47109 * 60.00636 * 22 21 9 40 40 H 1.09002 * 109.47149 * 179.97438 * 22 21 9 41 41 H 1.08999 * 109.47567 * 300.00367 * 22 21 9 42 42 H 1.08997 * 109.47868 * 59.99966 * 23 21 9 43 43 H 1.09002 * 109.47190 * 180.02562 * 23 21 9 44 44 H 1.08999 * 109.46960 * 299.99669 * 23 21 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 6 2.0399 -0.7213 1.2492 5 8 1.6619 -2.0982 1.1919 6 6 2.0912 -2.8663 2.3179 7 1 2.2964 -2.2528 3.1952 8 6 3.2123 -3.8665 1.9899 9 6 2.4913 -4.8584 2.9179 10 1 2.8068 -4.7907 3.9591 11 7 2.4839 -6.2378 2.4128 12 6 3.4487 -7.0710 3.1428 13 6 3.4122 -8.4758 2.5984 14 1 2.7398 -8.7247 1.7907 15 6 4.2371 -9.4434 3.1316 16 7 4.2056 -10.6692 2.6563 17 14 5.3996 -9.0131 4.5291 18 1 4.7148 -9.2337 5.8283 19 1 5.8019 -7.5880 4.4174 20 1 6.6061 -9.8755 4.4528 21 6 1.1988 -4.0835 2.6123 22 6 0.4478 -4.6038 1.3850 23 6 0.2924 -3.8984 3.8309 24 1 -0.3634 0.5139 -0.8899 25 1 -0.3634 -1.0277 0.0005 26 1 -0.3633 0.5138 0.8900 27 1 1.8933 -0.5138 -0.8900 28 1 3.1300 1.4425 -0.0005 29 1 1.6767 1.9563 -0.8899 30 1 1.6767 1.9562 0.8900 31 1 1.6054 -0.2619 2.1370 32 1 3.1263 -0.6445 1.2951 33 1 4.1922 -3.5596 2.3557 34 1 3.2277 -4.1779 0.9455 35 1 2.6646 -6.2605 1.4204 36 1 3.1889 -7.0850 4.2013 37 1 4.4504 -6.6593 3.0199 38 1 4.7858 -11.3500 3.0316 39 1 0.1722 -5.6466 1.5429 40 1 -0.4530 -4.0096 1.2313 41 1 1.0889 -4.5264 0.5069 42 1 0.8286 -3.3452 4.6020 43 1 -0.5996 -3.3439 3.5394 44 1 0.0022 -4.8745 4.2194 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000082923059.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:24:08 Heat of formation + Delta-G solvation = -65.052401 kcal Electronic energy + Delta-G solvation = -19671.696692 eV Core-core repulsion = 16816.231363 eV Total energy + Delta-G solvation = -2855.465328 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 255.194 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -41.22068 -38.41070 -36.13660 -35.22644 -33.91511 -31.31252 -29.06719 -28.26285 -27.97913 -26.93631 -24.31829 -23.43095 -22.86640 -21.20229 -19.65090 -18.65115 -17.69019 -16.80110 -16.69689 -16.17178 -15.75147 -15.47108 -15.23954 -14.90258 -14.54165 -14.51799 -14.10958 -13.79437 -13.50049 -13.38211 -13.05082 -13.02431 -12.91840 -12.69674 -12.66101 -12.47525 -12.34155 -12.00698 -11.97053 -11.81960 -11.70834 -11.58740 -11.39480 -11.33908 -10.93892 -10.80690 -10.19060 -8.99176 -8.30096 -6.34497 1.34476 1.36175 1.47158 2.33867 2.74132 3.03984 3.52022 3.56631 3.67495 3.84655 3.97310 4.05756 4.06983 4.28267 4.36753 4.42483 4.57348 4.60841 4.64827 4.71640 4.79057 4.82322 4.84837 4.92065 4.94375 5.01913 5.03516 5.07013 5.09076 5.15857 5.18942 5.25011 5.29779 5.42661 5.47166 5.51900 5.52917 5.62386 6.00822 6.43146 6.59361 6.68157 6.77930 7.30625 8.86852 Molecular weight = 255.19amu Principal moments of inertia in cm(-1) A = 0.036563 B = 0.003997 C = 0.003904 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 765.619684 B = 7003.614595 C = 7170.641670 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C -0.096 4.096 3 C -0.142 4.142 4 C 0.059 3.941 5 O -0.379 6.379 6 C 0.085 3.915 7 H 0.102 0.898 8 C -0.183 4.183 9 C 0.065 3.935 10 H 0.093 0.907 11 N -0.669 5.669 12 C 0.177 3.823 13 C -0.528 4.528 14 H 0.035 0.965 15 C 0.006 3.994 16 N -0.949 5.949 17 Si 0.953 3.047 18 H -0.265 1.265 19 H -0.250 1.250 20 H -0.281 1.281 21 C -0.069 4.069 22 C -0.102 4.102 23 C -0.130 4.130 24 H 0.060 0.940 25 H 0.046 0.954 26 H 0.057 0.943 27 H 0.065 0.935 28 H 0.058 0.942 29 H 0.067 0.933 30 H 0.063 0.937 31 H 0.057 0.943 32 H 0.048 0.952 33 H 0.070 0.930 34 H 0.078 0.922 35 H 0.336 0.664 36 H 0.024 0.976 37 H -0.014 1.014 38 H 0.267 0.733 39 H 0.048 0.952 40 H 0.057 0.943 41 H 0.044 0.956 42 H 0.065 0.935 43 H 0.063 0.937 44 H 0.049 0.951 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.679 25.691 -0.377 26.116 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C -0.114 4.114 3 C -0.199 4.199 4 C -0.017 4.017 5 O -0.298 6.298 6 C 0.026 3.974 7 H 0.119 0.881 8 C -0.223 4.223 9 C -0.046 4.046 10 H 0.112 0.888 11 N -0.298 5.298 12 C 0.048 3.952 13 C -0.566 4.566 14 H 0.054 0.946 15 C -0.191 4.191 16 N -0.589 5.589 17 Si 0.776 3.224 18 H -0.190 1.190 19 H -0.174 1.174 20 H -0.207 1.207 21 C -0.070 4.070 22 C -0.159 4.159 23 C -0.187 4.187 24 H 0.079 0.921 25 H 0.065 0.935 26 H 0.076 0.924 27 H 0.084 0.916 28 H 0.077 0.923 29 H 0.086 0.914 30 H 0.082 0.918 31 H 0.075 0.925 32 H 0.066 0.934 33 H 0.089 0.911 34 H 0.096 0.904 35 H 0.154 0.846 36 H 0.042 0.958 37 H 0.003 0.997 38 H 0.076 0.924 39 H 0.067 0.933 40 H 0.076 0.924 41 H 0.063 0.937 42 H 0.084 0.916 43 H 0.082 0.918 44 H 0.068 0.932 Dipole moment (debyes) X Y Z Total from point charges -5.249 25.236 -0.124 25.777 hybrid contribution 1.554 -0.314 0.121 1.590 sum -3.695 24.923 -0.003 25.195 Atomic orbital electron populations 1.21748 0.94535 1.01590 1.01951 1.21108 0.96816 0.96410 0.97094 1.21755 1.01213 0.94084 1.02830 1.22761 0.98585 0.81661 0.98717 1.87940 1.78086 1.20783 1.43002 1.23597 0.94107 0.90444 0.89210 0.88072 1.24165 0.98930 0.98675 1.00519 1.22989 0.96530 0.86787 0.98301 0.88845 1.60228 1.53251 1.08483 1.07839 1.19751 0.89553 0.91431 0.94444 1.21366 1.21603 0.94514 1.19122 0.94641 1.25906 0.98817 0.94506 0.99852 1.70062 1.40992 1.03456 1.44435 0.85636 0.78269 0.79293 0.79227 1.19006 1.17370 1.20695 1.22246 0.94603 0.93359 0.96801 1.21131 0.99152 1.00078 0.95547 1.21680 0.99278 1.01555 0.96182 0.92061 0.93493 0.92365 0.91641 0.92307 0.91378 0.91843 0.92523 0.93383 0.91141 0.90376 0.84578 0.95811 0.99674 0.92375 0.93275 0.92376 0.93662 0.91608 0.91753 0.93177 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.27 9.09 71.98 0.65 -1.62 16 2 C -0.10 -1.56 3.16 -10.80 -0.03 -1.60 16 3 C -0.14 -1.68 9.19 71.98 0.66 -1.02 16 4 C 0.06 1.09 5.17 71.98 0.37 1.46 16 5 O -0.38 -9.19 8.99 -148.98 -1.34 -10.53 16 6 C 0.08 2.05 3.70 31.12 0.12 2.16 16 7 H 0.10 2.03 7.71 -2.39 -0.02 2.01 16 8 C -0.18 -5.17 7.19 31.12 0.22 -4.95 16 9 C 0.07 2.10 3.60 45.44 0.16 2.26 16 10 H 0.09 2.96 7.85 -2.38 -0.02 2.94 16 11 N -0.67 -27.73 5.57 -492.86 -2.74 -30.47 16 12 C 0.18 8.55 4.37 85.56 0.37 8.93 16 13 C -0.53 -31.19 9.87 25.60 0.25 -30.94 16 14 H 0.04 2.33 8.06 -2.91 -0.02 2.31 16 15 C 0.01 0.38 5.47 84.65 0.46 0.85 16 16 N -0.95 -60.22 13.96 21.45 0.30 -59.92 16 17 Si 0.95 44.50 27.47 68.60 1.88 46.38 16 18 H -0.27 -11.88 7.11 99.48 0.71 -11.17 16 19 H -0.25 -10.86 6.54 99.48 0.65 -10.21 16 20 H -0.28 -12.82 7.11 99.48 0.71 -12.12 16 21 C -0.07 -1.90 1.35 -51.66 -0.07 -1.97 16 22 C -0.10 -3.01 7.76 71.98 0.56 -2.46 16 23 C -0.13 -3.12 9.19 71.98 0.66 -2.45 16 24 H 0.06 0.85 8.14 -2.39 -0.02 0.83 16 25 H 0.05 0.93 7.82 -2.39 -0.02 0.91 16 26 H 0.06 0.84 8.14 -2.39 -0.02 0.82 16 27 H 0.07 1.22 8.14 -2.39 -0.02 1.20 16 28 H 0.06 0.67 8.14 -2.39 -0.02 0.65 16 29 H 0.07 0.71 8.14 -2.39 -0.02 0.69 16 30 H 0.06 0.66 8.14 -2.39 -0.02 0.64 16 31 H 0.06 0.91 8.14 -2.39 -0.02 0.89 16 32 H 0.05 0.85 8.14 -2.39 -0.02 0.83 16 33 H 0.07 1.85 8.14 -2.38 -0.02 1.83 16 34 H 0.08 2.40 7.34 -2.39 -0.02 2.38 16 35 H 0.34 14.10 8.04 -89.70 -0.72 13.38 16 36 H 0.02 1.14 7.55 -2.39 -0.02 1.12 16 37 H -0.01 -0.69 7.20 -2.39 -0.02 -0.71 16 38 H 0.27 15.75 8.31 -92.71 -0.77 14.98 16 39 H 0.05 1.65 7.77 -2.38 -0.02 1.63 16 40 H 0.06 1.55 8.14 -2.39 -0.02 1.53 16 41 H 0.04 1.39 7.19 -2.39 -0.02 1.37 16 42 H 0.06 1.34 7.94 -2.39 -0.02 1.32 16 43 H 0.06 1.38 8.14 -2.39 -0.02 1.36 16 44 H 0.05 1.35 8.14 -2.39 -0.02 1.33 16 Total: -1.00 -65.79 346.34 2.65 -63.14 By element: Atomic # 1 Polarization: 22.60 SS G_CDS: 0.15 Total: 22.75 kcal Atomic # 6 Polarization: -35.74 SS G_CDS: 4.40 Total: -31.34 kcal Atomic # 7 Polarization: -87.95 SS G_CDS: -2.44 Total: -90.39 kcal Atomic # 8 Polarization: -9.19 SS G_CDS: -1.34 Total: -10.53 kcal Atomic # 14 Polarization: 44.50 SS G_CDS: 1.88 Total: 46.38 kcal Total: -65.79 2.65 -63.14 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000082923059.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -1.914 kcal (2) G-P(sol) polarization free energy of solvation -65.790 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -67.704 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.652 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.138 kcal (6) G-S(sol) free energy of system = (1) + (5) -65.052 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.48 seconds