Wall clock time and date at job start Mon Mar 30 2020 07:24:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.52997 * 109.47394 * 2 1 4 4 C 1.52999 * 109.47151 * 120.00272 * 2 1 3 5 5 O 1.42896 * 109.47216 * 64.99905 * 4 2 1 6 6 C 1.42902 * 114.00200 * 179.97438 * 5 4 2 7 7 H 1.08997 * 112.85061 * 338.31277 * 6 5 4 8 8 C 1.53787 * 113.61146 * 109.50210 * 6 5 4 9 9 C 1.53784 * 87.07923 * 89.12003 * 8 6 5 10 10 H 1.09000 * 113.61578 * 270.88484 * 9 8 6 11 11 N 1.46895 * 113.61682 * 139.97975 * 9 8 6 12 12 C 1.46900 * 111.00220 * 104.49869 * 11 9 8 13 13 C 1.50698 * 109.46994 * 180.02562 * 12 11 9 14 14 H 1.08000 * 120.00387 * 0.02562 * 13 12 11 15 15 C 1.37881 * 119.99487 * 180.02562 * 13 12 11 16 16 N 1.31517 * 120.00164 * 359.97438 * 15 13 12 17 17 Si 1.86806 * 119.99812 * 180.02562 * 15 13 12 18 18 H 1.48495 * 109.47119 * 359.97438 * 17 15 13 19 19 H 1.48501 * 109.47218 * 119.99913 * 17 15 13 20 20 H 1.48499 * 109.46775 * 239.99863 * 17 15 13 21 21 C 1.53778 * 113.61795 * 206.99875 * 6 5 4 22 22 C 1.53001 * 113.61263 * 25.43796 * 21 6 5 23 23 C 1.53001 * 113.61314 * 156.24937 * 21 6 5 24 24 H 1.08996 * 109.46591 * 299.99834 * 1 2 3 25 25 H 1.08998 * 109.47030 * 59.99308 * 1 2 3 26 26 H 1.08997 * 109.46881 * 180.02562 * 1 2 3 27 27 H 1.09001 * 109.47265 * 240.00079 * 2 1 3 28 28 H 1.08997 * 109.47304 * 180.02562 * 3 2 1 29 29 H 1.08999 * 109.47122 * 300.00113 * 3 2 1 30 30 H 1.09001 * 109.46850 * 59.99825 * 3 2 1 31 31 H 1.08997 * 109.47274 * 304.99558 * 4 2 1 32 32 H 1.09001 * 109.47094 * 184.99983 * 4 2 1 33 33 H 1.09004 * 113.61202 * 203.66756 * 8 6 5 34 34 H 1.08994 * 113.61447 * 334.57188 * 8 6 5 35 35 H 1.00899 * 111.00108 * 228.45913 * 11 9 8 36 36 H 1.09001 * 109.47530 * 300.00702 * 12 11 9 37 37 H 1.09009 * 109.46384 * 60.00380 * 12 11 9 38 38 H 0.97003 * 119.99338 * 180.02562 * 16 15 13 39 39 H 1.08998 * 109.47475 * 79.49853 * 22 21 6 40 40 H 1.09000 * 109.47144 * 199.50473 * 22 21 6 41 41 H 1.09009 * 109.46958 * 319.50307 * 22 21 6 42 42 H 1.09004 * 109.47074 * 40.50297 * 23 21 6 43 43 H 1.09003 * 109.46695 * 160.50026 * 23 21 6 44 44 H 1.08996 * 109.47486 * 280.49817 * 23 21 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 6 2.0400 -0.7213 1.2492 5 8 1.6620 -2.0982 1.1919 6 6 2.0924 -2.8664 2.3174 7 1 2.9324 -2.4127 2.8433 8 6 0.9439 -3.2957 3.2456 9 6 0.8116 -4.5533 2.3705 10 1 0.1332 -4.4286 1.5265 11 7 0.5511 -5.7790 3.1371 12 6 -0.8544 -6.1882 3.0141 13 6 -1.0831 -7.4457 3.8125 14 1 -0.2662 -7.8957 4.3571 15 6 -2.3353 -8.0217 3.8476 16 7 -3.3302 -7.4735 3.1848 17 14 -2.6191 -9.5801 4.8378 18 1 -1.3488 -9.9923 5.4869 19 1 -3.6473 -9.3251 5.8784 20 1 -3.0868 -10.6621 3.9346 21 6 2.2924 -4.3587 2.0045 22 6 2.6022 -4.6401 0.5329 23 6 3.2594 -5.0609 2.9600 24 1 -0.3632 0.5138 0.8900 25 1 -0.3633 0.5139 -0.8899 26 1 -0.3633 -1.0277 0.0005 27 1 1.8934 -0.5138 -0.8900 28 1 3.1301 1.4424 -0.0005 29 1 1.6768 1.9563 -0.8900 30 1 1.6767 1.9563 0.8900 31 1 1.6055 -0.2618 2.1369 32 1 3.1264 -0.6444 1.2951 33 1 1.2629 -3.5058 4.2666 34 1 0.0759 -2.6382 3.1992 35 1 1.1705 -6.5226 2.8516 36 1 -1.4984 -5.3950 3.3938 37 1 -1.0879 -6.3753 1.9659 38 1 -4.2112 -7.8786 3.2099 39 1 3.6538 -4.4311 0.3364 40 1 2.3921 -5.6864 0.3110 41 1 1.9814 -4.0032 -0.0974 42 1 3.0844 -4.7097 3.9769 43 1 3.0970 -6.1378 2.9145 44 1 4.2854 -4.8356 2.6692 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000082923060.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:24:12 Heat of formation + Delta-G solvation = -48.060018 kcal Electronic energy + Delta-G solvation = -19728.830260 eV Core-core repulsion = 16874.101777 eV Total energy + Delta-G solvation = -2854.728483 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 255.194 amu Computer time = 0.39 seconds Orbital eigenvalues (eV) -39.98476 -37.33106 -34.76924 -33.64463 -31.74403 -30.06138 -27.27673 -27.23307 -26.60515 -25.86370 -23.11285 -22.11352 -21.12099 -20.30366 -18.11599 -16.78590 -16.08676 -15.49175 -15.21720 -14.84748 -14.72653 -14.14740 -13.88463 -13.84442 -13.00670 -12.78635 -12.71198 -12.43932 -12.25660 -12.08854 -12.04772 -11.75035 -11.64767 -11.33834 -11.19079 -11.14028 -10.91647 -10.88517 -10.72096 -10.67180 -10.38632 -10.03318 -9.94744 -9.53956 -9.13595 -8.97927 -8.44249 -7.20531 -5.98584 -4.00298 3.33318 3.40359 3.45469 3.61830 4.46648 4.66584 4.74184 4.84812 4.90479 5.01060 5.14457 5.30381 5.32701 5.37213 5.39869 5.45087 5.55163 5.55440 5.63316 5.71573 5.73795 5.81460 5.91698 5.93761 5.97608 6.06974 6.15427 6.17880 6.24065 6.29385 6.38410 6.44986 6.54852 6.75807 6.82192 7.36698 7.45581 7.50603 7.85470 8.20789 8.49207 8.70282 9.09918 9.64465 11.12526 Molecular weight = 255.19amu Principal moments of inertia in cm(-1) A = 0.029101 B = 0.004219 C = 0.003875 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 961.929649 B = 6635.686275 C = 7224.516017 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.095 4.095 3 C -0.145 4.145 4 C 0.067 3.933 5 O -0.360 6.360 6 C 0.071 3.929 7 H 0.067 0.933 8 C -0.144 4.144 9 C 0.081 3.919 10 H 0.065 0.935 11 N -0.676 5.676 12 C 0.193 3.807 13 C -0.512 4.512 14 H 0.062 0.938 15 C 0.055 3.945 16 N -0.898 5.898 17 Si 0.897 3.103 18 H -0.272 1.272 19 H -0.284 1.284 20 H -0.285 1.285 21 C -0.089 4.089 22 C -0.131 4.131 23 C -0.117 4.117 24 H 0.052 0.948 25 H 0.051 0.949 26 H 0.066 0.934 27 H 0.076 0.924 28 H 0.054 0.946 29 H 0.059 0.941 30 H 0.055 0.945 31 H 0.047 0.953 32 H 0.044 0.956 33 H 0.092 0.908 34 H 0.063 0.937 35 H 0.328 0.672 36 H 0.026 0.974 37 H -0.015 1.015 38 H 0.260 0.740 39 H 0.047 0.953 40 H 0.051 0.949 41 H 0.064 0.936 42 H 0.062 0.938 43 H 0.066 0.934 44 H 0.047 0.953 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.911 14.397 -5.337 20.062 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.113 4.113 3 C -0.203 4.203 4 C -0.010 4.010 5 O -0.279 6.279 6 C 0.013 3.987 7 H 0.085 0.915 8 C -0.182 4.182 9 C -0.030 4.030 10 H 0.083 0.917 11 N -0.307 5.307 12 C 0.067 3.933 13 C -0.550 4.550 14 H 0.080 0.920 15 C -0.147 4.147 16 N -0.537 5.537 17 Si 0.725 3.275 18 H -0.197 1.197 19 H -0.210 1.210 20 H -0.212 1.212 21 C -0.090 4.090 22 C -0.188 4.188 23 C -0.174 4.174 24 H 0.071 0.929 25 H 0.070 0.930 26 H 0.085 0.915 27 H 0.095 0.905 28 H 0.073 0.927 29 H 0.078 0.922 30 H 0.075 0.925 31 H 0.065 0.935 32 H 0.062 0.938 33 H 0.111 0.889 34 H 0.082 0.918 35 H 0.146 0.854 36 H 0.045 0.955 37 H 0.003 0.997 38 H 0.070 0.930 39 H 0.066 0.934 40 H 0.070 0.930 41 H 0.083 0.917 42 H 0.081 0.919 43 H 0.085 0.915 44 H 0.066 0.934 Dipole moment (debyes) X Y Z Total from point charges 12.502 14.616 -4.932 19.856 hybrid contribution -0.304 -1.018 -0.180 1.077 sum 12.198 13.598 -5.113 18.970 Atomic orbital electron populations 1.21788 0.94443 1.02815 1.01196 1.21089 0.96903 0.95372 0.97981 1.21783 1.00869 0.95492 1.02118 1.22575 0.97896 0.82688 0.97836 1.87859 1.78134 1.19408 1.42467 1.23103 0.96542 0.91517 0.87581 0.91546 1.23524 0.98027 0.97770 0.98914 1.22889 0.93308 0.92347 0.94499 0.91743 1.60833 1.08298 1.05217 1.56383 1.19578 0.83219 0.95751 0.94798 1.21246 0.95328 1.08847 1.29628 0.91997 1.25000 0.96083 0.97715 0.95858 1.69985 1.01238 1.40145 1.42371 0.86452 0.78180 0.82991 0.79836 1.19684 1.21045 1.21151 1.22341 0.96939 0.93665 0.96025 1.21588 1.00717 1.01290 0.95223 1.21418 0.96489 1.00884 0.98645 0.92928 0.93012 0.91523 0.90520 0.92685 0.92161 0.92549 0.93514 0.93780 0.88932 0.91798 0.85369 0.95538 0.99727 0.93046 0.93404 0.92961 0.91682 0.91852 0.91520 0.93389 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.54 9.09 37.16 0.34 -1.20 16 2 C -0.09 -0.94 3.16 -90.62 -0.29 -1.23 16 3 C -0.15 -1.12 9.19 37.16 0.34 -0.78 16 4 C 0.07 0.74 5.17 37.16 0.19 0.94 16 5 O -0.36 -5.09 8.39 -35.23 -0.30 -5.38 16 6 C 0.07 1.01 3.78 -25.92 -0.10 0.91 16 7 H 0.07 0.83 7.85 -51.93 -0.41 0.42 16 8 C -0.14 -2.39 7.36 -25.91 -0.19 -2.58 16 9 C 0.08 1.50 3.49 -66.90 -0.23 1.27 16 10 H 0.06 1.35 7.85 -51.93 -0.41 0.94 16 11 N -0.68 -14.74 6.00 -107.13 -0.64 -15.39 16 12 C 0.19 5.22 5.30 -4.98 -0.03 5.19 16 13 C -0.51 -14.78 9.32 -34.44 -0.32 -15.10 16 14 H 0.06 1.75 7.81 -52.49 -0.41 1.34 16 15 C 0.05 1.59 5.46 -17.82 -0.10 1.49 16 16 N -0.90 -27.39 13.29 55.43 0.74 -26.65 16 17 Si 0.90 22.01 29.54 -169.99 -5.02 16.99 16 18 H -0.27 -6.53 7.11 56.52 0.40 -6.13 16 19 H -0.28 -6.91 7.11 56.52 0.40 -6.51 16 20 H -0.29 -6.91 7.11 56.52 0.40 -6.51 16 21 C -0.09 -1.33 1.26 -153.70 -0.19 -1.52 16 22 C -0.13 -1.85 8.98 37.16 0.33 -1.52 16 23 C -0.12 -1.59 8.39 37.16 0.31 -1.28 16 24 H 0.05 0.54 8.14 -51.93 -0.42 0.12 16 25 H 0.05 0.48 8.14 -51.93 -0.42 0.06 16 26 H 0.07 0.84 7.82 -51.93 -0.41 0.44 16 27 H 0.08 0.79 8.14 -51.93 -0.42 0.37 16 28 H 0.05 0.38 8.14 -51.93 -0.42 -0.04 16 29 H 0.06 0.42 8.14 -51.93 -0.42 0.00 16 30 H 0.06 0.42 8.14 -51.93 -0.42 -0.01 16 31 H 0.05 0.51 8.14 -51.93 -0.42 0.09 16 32 H 0.04 0.44 8.14 -51.93 -0.42 0.02 16 33 H 0.09 1.53 7.63 -51.93 -0.40 1.14 16 34 H 0.06 1.10 8.14 -51.93 -0.42 0.67 16 35 H 0.33 6.86 7.15 -39.29 -0.28 6.58 16 36 H 0.03 0.78 8.14 -51.93 -0.42 0.35 16 37 H -0.02 -0.44 8.13 -51.92 -0.42 -0.86 16 38 H 0.26 7.45 8.31 -40.82 -0.34 7.12 16 39 H 0.05 0.59 8.14 -51.93 -0.42 0.17 16 40 H 0.05 0.75 8.14 -51.93 -0.42 0.33 16 41 H 0.06 0.97 7.07 -51.92 -0.37 0.60 16 42 H 0.06 0.88 7.33 -51.93 -0.38 0.49 16 43 H 0.07 0.94 6.93 -51.93 -0.36 0.58 16 44 H 0.05 0.55 8.14 -51.93 -0.42 0.13 16 LS Contribution 348.24 15.07 5.25 5.25 Total: -1.00 -30.30 348.24 -8.37 -38.67 By element: Atomic # 1 Polarization: 10.38 SS G_CDS: -8.47 Total: 1.91 kcal Atomic # 6 Polarization: -15.47 SS G_CDS: 0.07 Total: -15.40 kcal Atomic # 7 Polarization: -42.13 SS G_CDS: 0.09 Total: -42.04 kcal Atomic # 8 Polarization: -5.09 SS G_CDS: -0.30 Total: -5.38 kcal Atomic # 14 Polarization: 22.01 SS G_CDS: -5.02 Total: 16.99 kcal Total LS contribution 5.25 Total: 5.25 kcal Total: -30.30 -8.37 -38.67 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000082923060.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -9.387 kcal (2) G-P(sol) polarization free energy of solvation -30.299 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -39.686 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.374 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.673 kcal (6) G-S(sol) free energy of system = (1) + (5) -48.060 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.39 seconds