Wall clock time and date at job start Mon Mar 30 2020 07:24:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.52997 * 109.47394 * 2 1 4 4 C 1.52999 * 109.47151 * 120.00272 * 2 1 3 5 5 O 1.42896 * 109.47216 * 64.99905 * 4 2 1 6 6 C 1.42902 * 114.00200 * 179.97438 * 5 4 2 7 7 H 1.08997 * 112.85061 * 338.31277 * 6 5 4 8 8 C 1.53787 * 113.61146 * 109.50210 * 6 5 4 9 9 C 1.53784 * 87.07923 * 89.12003 * 8 6 5 10 10 H 1.09000 * 113.61578 * 270.88484 * 9 8 6 11 11 N 1.46895 * 113.61682 * 139.97975 * 9 8 6 12 12 C 1.46900 * 111.00220 * 104.49869 * 11 9 8 13 13 C 1.50698 * 109.46994 * 180.02562 * 12 11 9 14 14 H 1.08000 * 120.00387 * 0.02562 * 13 12 11 15 15 C 1.37881 * 119.99487 * 180.02562 * 13 12 11 16 16 N 1.31517 * 120.00164 * 359.97438 * 15 13 12 17 17 Si 1.86806 * 119.99812 * 180.02562 * 15 13 12 18 18 H 1.48495 * 109.47119 * 359.97438 * 17 15 13 19 19 H 1.48501 * 109.47218 * 119.99913 * 17 15 13 20 20 H 1.48499 * 109.46775 * 239.99863 * 17 15 13 21 21 C 1.53778 * 113.61795 * 206.99875 * 6 5 4 22 22 C 1.53001 * 113.61263 * 25.43796 * 21 6 5 23 23 C 1.53001 * 113.61314 * 156.24937 * 21 6 5 24 24 H 1.08996 * 109.46591 * 299.99834 * 1 2 3 25 25 H 1.08998 * 109.47030 * 59.99308 * 1 2 3 26 26 H 1.08997 * 109.46881 * 180.02562 * 1 2 3 27 27 H 1.09001 * 109.47265 * 240.00079 * 2 1 3 28 28 H 1.08997 * 109.47304 * 180.02562 * 3 2 1 29 29 H 1.08999 * 109.47122 * 300.00113 * 3 2 1 30 30 H 1.09001 * 109.46850 * 59.99825 * 3 2 1 31 31 H 1.08997 * 109.47274 * 304.99558 * 4 2 1 32 32 H 1.09001 * 109.47094 * 184.99983 * 4 2 1 33 33 H 1.09004 * 113.61202 * 203.66756 * 8 6 5 34 34 H 1.08994 * 113.61447 * 334.57188 * 8 6 5 35 35 H 1.00899 * 111.00108 * 228.45913 * 11 9 8 36 36 H 1.09001 * 109.47530 * 300.00702 * 12 11 9 37 37 H 1.09009 * 109.46384 * 60.00380 * 12 11 9 38 38 H 0.97003 * 119.99338 * 180.02562 * 16 15 13 39 39 H 1.08998 * 109.47475 * 79.49853 * 22 21 6 40 40 H 1.09000 * 109.47144 * 199.50473 * 22 21 6 41 41 H 1.09009 * 109.46958 * 319.50307 * 22 21 6 42 42 H 1.09004 * 109.47074 * 40.50297 * 23 21 6 43 43 H 1.09003 * 109.46695 * 160.50026 * 23 21 6 44 44 H 1.08996 * 109.47486 * 280.49817 * 23 21 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 6 2.0400 -0.7213 1.2492 5 8 1.6620 -2.0982 1.1919 6 6 2.0924 -2.8664 2.3174 7 1 2.9324 -2.4127 2.8433 8 6 0.9439 -3.2957 3.2456 9 6 0.8116 -4.5533 2.3705 10 1 0.1332 -4.4286 1.5265 11 7 0.5511 -5.7790 3.1371 12 6 -0.8544 -6.1882 3.0141 13 6 -1.0831 -7.4457 3.8125 14 1 -0.2662 -7.8957 4.3571 15 6 -2.3353 -8.0217 3.8476 16 7 -3.3302 -7.4735 3.1848 17 14 -2.6191 -9.5801 4.8378 18 1 -1.3488 -9.9923 5.4869 19 1 -3.6473 -9.3251 5.8784 20 1 -3.0868 -10.6621 3.9346 21 6 2.2924 -4.3587 2.0045 22 6 2.6022 -4.6401 0.5329 23 6 3.2594 -5.0609 2.9600 24 1 -0.3632 0.5138 0.8900 25 1 -0.3633 0.5139 -0.8899 26 1 -0.3633 -1.0277 0.0005 27 1 1.8934 -0.5138 -0.8900 28 1 3.1301 1.4424 -0.0005 29 1 1.6768 1.9563 -0.8900 30 1 1.6767 1.9563 0.8900 31 1 1.6055 -0.2618 2.1369 32 1 3.1264 -0.6444 1.2951 33 1 1.2629 -3.5058 4.2666 34 1 0.0759 -2.6382 3.1992 35 1 1.1705 -6.5226 2.8516 36 1 -1.4984 -5.3950 3.3938 37 1 -1.0879 -6.3753 1.9659 38 1 -4.2112 -7.8786 3.2099 39 1 3.6538 -4.4311 0.3364 40 1 2.3921 -5.6864 0.3110 41 1 1.9814 -4.0032 -0.0974 42 1 3.0844 -4.7097 3.9769 43 1 3.0970 -6.1378 2.9145 44 1 4.2854 -4.8356 2.6692 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000082923060.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:24:11 Heat of formation + Delta-G solvation = -66.500250 kcal Electronic energy + Delta-G solvation = -19729.629889 eV Core-core repulsion = 16874.101777 eV Total energy + Delta-G solvation = -2855.528112 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 255.194 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -41.25794 -38.37981 -36.13784 -35.25250 -33.72474 -31.34214 -28.66478 -28.28959 -28.02224 -26.85707 -24.80027 -23.52106 -22.88555 -21.14454 -19.50223 -18.49938 -17.56903 -16.81956 -16.47054 -16.35168 -16.16964 -15.67806 -15.12883 -14.87346 -14.37243 -14.27752 -14.01946 -13.75936 -13.53505 -13.24248 -13.09786 -12.98268 -12.94689 -12.84460 -12.70220 -12.50122 -12.38490 -12.12201 -12.03252 -11.86244 -11.74280 -11.47420 -11.38099 -11.14741 -10.74507 -10.67705 -10.26881 -9.09795 -8.23020 -6.35078 1.40225 1.41324 1.55513 2.39490 2.60963 3.09902 3.52098 3.60141 3.64971 3.93570 3.97768 4.02870 4.15880 4.28190 4.34006 4.35682 4.57025 4.62758 4.66186 4.77193 4.79462 4.84237 4.86236 4.97289 5.00288 5.01843 5.02833 5.05727 5.11759 5.20642 5.22414 5.23261 5.29506 5.41243 5.42289 5.55088 5.56526 5.65386 6.03280 6.41043 6.48268 6.74767 6.90634 7.36403 8.89069 Molecular weight = 255.19amu Principal moments of inertia in cm(-1) A = 0.029101 B = 0.004219 C = 0.003875 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 961.929649 B = 6635.686275 C = 7224.516017 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.094 4.094 3 C -0.140 4.140 4 C 0.060 3.940 5 O -0.379 6.379 6 C 0.088 3.912 7 H 0.098 0.902 8 C -0.144 4.144 9 C 0.061 3.939 10 H 0.032 0.968 11 N -0.666 5.666 12 C 0.211 3.789 13 C -0.533 4.533 14 H 0.067 0.933 15 C -0.002 4.002 16 N -0.937 5.937 17 Si 0.977 3.023 18 H -0.260 1.260 19 H -0.278 1.278 20 H -0.278 1.278 21 C -0.078 4.078 22 C -0.127 4.127 23 C -0.114 4.114 24 H 0.053 0.947 25 H 0.063 0.937 26 H 0.036 0.964 27 H 0.072 0.928 28 H 0.066 0.934 29 H 0.067 0.933 30 H 0.059 0.941 31 H 0.048 0.952 32 H 0.064 0.936 33 H 0.096 0.904 34 H 0.048 0.952 35 H 0.334 0.666 36 H -0.008 1.008 37 H -0.048 1.048 38 H 0.265 0.735 39 H 0.074 0.926 40 H 0.043 0.957 41 H 0.051 0.949 42 H 0.061 0.939 43 H 0.057 0.943 44 H 0.078 0.922 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 15.197 14.672 -4.695 21.639 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.112 4.112 3 C -0.197 4.197 4 C -0.016 4.016 5 O -0.298 6.298 6 C 0.030 3.970 7 H 0.115 0.885 8 C -0.183 4.183 9 C -0.049 4.049 10 H 0.050 0.950 11 N -0.297 5.297 12 C 0.083 3.917 13 C -0.571 4.571 14 H 0.085 0.915 15 C -0.200 4.200 16 N -0.577 5.577 17 Si 0.801 3.199 18 H -0.183 1.183 19 H -0.204 1.204 20 H -0.203 1.203 21 C -0.079 4.079 22 C -0.184 4.184 23 C -0.171 4.171 24 H 0.072 0.928 25 H 0.082 0.918 26 H 0.055 0.945 27 H 0.090 0.910 28 H 0.085 0.915 29 H 0.086 0.914 30 H 0.078 0.922 31 H 0.067 0.933 32 H 0.082 0.918 33 H 0.115 0.885 34 H 0.067 0.933 35 H 0.152 0.848 36 H 0.010 0.990 37 H -0.030 1.030 38 H 0.073 0.927 39 H 0.093 0.907 40 H 0.062 0.938 41 H 0.070 0.930 42 H 0.080 0.920 43 H 0.076 0.924 44 H 0.097 0.903 Dipole moment (debyes) X Y Z Total from point charges 14.812 14.911 -4.297 21.452 hybrid contribution -1.052 -1.029 -0.437 1.536 sum 13.760 13.882 -4.734 20.111 Atomic orbital electron populations 1.21778 0.95498 1.01039 1.01896 1.21114 0.95999 0.96816 0.97305 1.21743 1.01572 0.93639 1.02729 1.22811 0.99186 0.81121 0.98474 1.87866 1.78621 1.21063 1.42298 1.22934 0.95802 0.91324 0.86987 0.88458 1.23528 0.98965 0.96382 0.99419 1.23034 0.96077 0.91683 0.94123 0.95004 1.60755 1.05404 1.06342 1.57183 1.19185 0.85742 0.94435 0.92371 1.21587 0.95919 1.09533 1.30069 0.91455 1.26033 0.95617 1.01520 0.96841 1.70128 1.01876 1.42015 1.43693 0.85227 0.78505 0.78094 0.78103 1.18348 1.20390 1.20316 1.22323 0.93977 0.94535 0.97036 1.21547 1.02082 1.00475 0.94293 1.21423 0.97616 1.00030 0.98078 0.92806 0.91772 0.94474 0.90978 0.91510 0.91359 0.92178 0.93336 0.91758 0.88539 0.93297 0.84763 0.98951 1.03043 0.92669 0.90701 0.93786 0.93005 0.91996 0.92400 0.90293 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.08 9.09 71.98 0.65 -2.43 16 2 C -0.09 -1.74 3.16 -10.79 -0.03 -1.77 16 3 C -0.14 -1.82 9.19 71.98 0.66 -1.16 16 4 C 0.06 1.24 5.17 71.98 0.37 1.61 16 5 O -0.38 -10.47 8.39 -148.98 -1.25 -11.72 16 6 C 0.09 2.37 3.78 31.12 0.12 2.48 16 7 H 0.10 2.08 7.85 -2.39 -0.02 2.06 16 8 C -0.14 -4.86 7.36 31.12 0.23 -4.63 16 9 C 0.06 2.38 3.49 45.44 0.16 2.54 16 10 H 0.03 1.44 7.85 -2.39 -0.02 1.42 16 11 N -0.67 -30.03 6.00 -492.85 -2.96 -32.99 16 12 C 0.21 12.00 5.30 85.56 0.45 12.45 16 13 C -0.53 -31.44 9.32 25.60 0.24 -31.21 16 14 H 0.07 3.82 7.81 -2.91 -0.02 3.80 16 15 C 0.00 -0.14 5.46 84.66 0.46 0.33 16 16 N -0.94 -58.68 13.29 21.45 0.28 -58.39 16 17 Si 0.98 45.29 29.54 68.60 2.03 47.31 16 18 H -0.26 -11.43 7.11 99.48 0.71 -10.72 16 19 H -0.28 -12.58 7.11 99.48 0.71 -11.87 16 20 H -0.28 -12.47 7.11 99.48 0.71 -11.76 16 21 C -0.08 -2.25 1.26 -51.66 -0.06 -2.31 16 22 C -0.13 -3.45 8.98 71.98 0.65 -2.80 16 23 C -0.11 -2.83 8.39 71.98 0.60 -2.22 16 24 H 0.05 1.10 8.14 -2.39 -0.02 1.08 16 25 H 0.06 1.17 8.14 -2.39 -0.02 1.15 16 26 H 0.04 0.99 7.82 -2.39 -0.02 0.97 16 27 H 0.07 1.41 8.14 -2.39 -0.02 1.39 16 28 H 0.07 0.73 8.14 -2.39 -0.02 0.71 16 29 H 0.07 0.79 8.14 -2.39 -0.02 0.77 16 30 H 0.06 0.75 8.14 -2.39 -0.02 0.73 16 31 H 0.05 0.98 8.14 -2.39 -0.02 0.96 16 32 H 0.06 1.08 8.14 -2.39 -0.02 1.06 16 33 H 0.10 3.16 7.63 -2.39 -0.02 3.14 16 34 H 0.05 1.75 8.14 -2.39 -0.02 1.73 16 35 H 0.33 14.23 7.15 -89.69 -0.64 13.59 16 36 H -0.01 -0.48 8.14 -2.39 -0.02 -0.50 16 37 H -0.05 -2.99 8.13 -2.38 -0.02 -3.00 16 38 H 0.26 15.44 8.31 -92.71 -0.77 14.67 16 39 H 0.07 1.64 8.14 -2.39 -0.02 1.62 16 40 H 0.04 1.25 8.14 -2.39 -0.02 1.23 16 41 H 0.05 1.54 7.07 -2.38 -0.02 1.52 16 42 H 0.06 1.56 7.33 -2.39 -0.02 1.54 16 43 H 0.06 1.54 6.93 -2.39 -0.02 1.52 16 44 H 0.08 1.50 8.14 -2.39 -0.02 1.48 16 Total: -1.00 -67.48 348.24 2.89 -64.59 By element: Atomic # 1 Polarization: 20.03 SS G_CDS: 0.29 Total: 20.32 kcal Atomic # 6 Polarization: -33.63 SS G_CDS: 4.50 Total: -29.13 kcal Atomic # 7 Polarization: -88.71 SS G_CDS: -2.67 Total: -91.38 kcal Atomic # 8 Polarization: -10.47 SS G_CDS: -1.25 Total: -11.72 kcal Atomic # 14 Polarization: 45.29 SS G_CDS: 2.03 Total: 47.31 kcal Total: -67.48 2.89 -64.59 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000082923060.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -1.910 kcal (2) G-P(sol) polarization free energy of solvation -67.484 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -69.394 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.894 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.590 kcal (6) G-S(sol) free energy of system = (1) + (5) -66.500 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds