Wall clock time and date at job start Mon Mar 30 2020 07:24:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 C 1.53008 * 109.46922 * 2 1 4 4 C 1.52997 * 109.47117 * 119.99468 * 2 1 3 5 5 O 1.42904 * 109.46971 * 65.00117 * 4 2 1 6 6 C 1.42902 * 113.99950 * 179.97438 * 5 4 2 7 7 H 1.09001 * 112.84792 * 21.70062 * 6 5 4 8 8 C 1.53775 * 113.61729 * 250.49549 * 6 5 4 9 9 C 1.53775 * 87.08238 * 270.88695 * 8 6 5 10 10 H 1.08998 * 113.61510 * 89.20214 * 9 8 6 11 11 N 1.46907 * 113.61288 * 220.01707 * 9 8 6 12 12 C 1.46895 * 110.99969 * 255.49210 * 11 9 8 13 13 C 1.50700 * 109.47051 * 180.02562 * 12 11 9 14 14 H 1.07999 * 119.99988 * 0.02562 * 13 12 11 15 15 C 1.37885 * 120.00047 * 180.02562 * 13 12 11 16 16 N 1.31518 * 119.99792 * 359.72305 * 15 13 12 17 17 Si 1.86795 * 120.00009 * 180.02562 * 15 13 12 18 18 H 1.48503 * 109.47163 * 59.99902 * 17 15 13 19 19 H 1.48495 * 109.47159 * 179.97438 * 17 15 13 20 20 H 1.48505 * 109.47290 * 299.99897 * 17 15 13 21 21 C 1.53778 * 87.08434 * 334.56741 * 9 8 6 22 22 C 1.53000 * 113.61786 * 139.97907 * 21 9 8 23 23 C 1.53004 * 113.61438 * 270.88899 * 21 9 8 24 24 H 1.09001 * 109.46936 * 180.02562 * 1 2 3 25 25 H 1.09005 * 109.47389 * 300.00357 * 1 2 3 26 26 H 1.09002 * 109.47368 * 60.00506 * 1 2 3 27 27 H 1.08996 * 109.47409 * 239.99820 * 2 1 3 28 28 H 1.08999 * 109.46922 * 180.02562 * 3 2 1 29 29 H 1.08999 * 109.47055 * 299.99553 * 3 2 1 30 30 H 1.08996 * 109.47226 * 59.99708 * 3 2 1 31 31 H 1.09001 * 109.47362 * 305.00493 * 4 2 1 32 32 H 1.09000 * 109.47181 * 185.00279 * 4 2 1 33 33 H 1.08995 * 113.61247 * 156.33574 * 8 6 5 34 34 H 1.09003 * 113.61074 * 25.43606 * 8 6 5 35 35 H 1.00893 * 111.00026 * 19.45223 * 11 9 8 36 36 H 1.09004 * 109.47210 * 60.00310 * 12 11 9 37 37 H 1.08997 * 109.47605 * 300.00670 * 12 11 9 38 38 H 0.97000 * 119.99468 * 179.97438 * 16 15 13 39 39 H 1.09005 * 109.46706 * 59.99985 * 22 21 9 40 40 H 1.08996 * 109.47142 * 180.02562 * 22 21 9 41 41 H 1.08997 * 109.47086 * 300.00701 * 22 21 9 42 42 H 1.08997 * 109.47110 * 59.99628 * 23 21 9 43 43 H 1.09000 * 109.47189 * 179.97438 * 23 21 9 44 44 H 1.09003 * 109.46843 * 299.99403 * 23 21 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0399 1.4426 0.0000 4 6 2.0399 -0.7211 1.2493 5 8 1.6619 -2.0981 1.1921 6 6 2.0923 -2.8662 2.3177 7 1 2.2979 -2.2528 3.1950 8 6 3.2131 -3.8663 1.9888 9 6 2.1046 -4.8783 1.6546 10 1 1.7808 -4.8436 0.6144 11 7 2.3943 -6.2424 2.1165 12 6 2.7905 -7.1049 0.9954 13 6 3.0785 -8.4929 1.5067 14 1 2.9769 -8.7125 2.5593 15 6 3.4717 -9.4825 0.6308 16 7 3.5902 -9.2165 -0.6517 17 14 3.8280 -11.2032 1.2645 18 1 2.6087 -11.7564 1.9070 19 1 4.2286 -12.0750 0.1312 20 1 4.9292 -11.1463 2.2592 21 6 1.1993 -4.0835 2.6104 22 6 -0.2365 -3.9260 2.1057 23 6 1.2713 -4.5614 4.0621 24 1 -0.3633 -1.0277 0.0005 25 1 -0.3634 0.5139 0.8900 26 1 -0.3634 0.5138 -0.8900 27 1 1.8933 -0.5138 -0.8899 28 1 3.1299 1.4426 -0.0005 29 1 1.6766 1.9564 -0.8900 30 1 1.6766 1.9564 0.8899 31 1 1.6053 -0.2616 2.1370 32 1 3.1262 -0.6442 1.2952 33 1 3.8149 -4.1474 2.8530 34 1 3.8159 -3.5787 1.1274 35 1 3.1011 -6.2378 2.8366 36 1 3.6849 -6.6986 0.5228 37 1 1.9817 -7.1473 0.2660 38 1 3.8671 -9.9126 -1.2678 39 1 -0.6858 -4.9105 1.9755 40 1 -0.8159 -3.3547 2.8310 41 1 -0.2303 -3.4002 1.1510 42 1 2.2940 -4.4641 4.4263 43 1 0.6074 -3.9546 4.6778 44 1 0.9641 -5.6059 4.1164 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000082923061.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:24:14 Heat of formation + Delta-G solvation = -48.488162 kcal Electronic energy + Delta-G solvation = -19711.389271 eV Core-core repulsion = 16856.642222 eV Total energy + Delta-G solvation = -2854.747049 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 255.194 amu Computer time = 0.39 seconds Orbital eigenvalues (eV) -40.00127 -37.33970 -34.77732 -33.66607 -31.80523 -29.90326 -27.31245 -27.15931 -26.57654 -25.83545 -23.12589 -22.10502 -21.27041 -20.34778 -18.22997 -16.63795 -16.07423 -15.77666 -15.06907 -14.81142 -14.33855 -14.22668 -13.99552 -13.67813 -13.29121 -12.88384 -12.60362 -12.32982 -12.23642 -12.07834 -11.94445 -11.77378 -11.61505 -11.32909 -11.24139 -11.18700 -10.97326 -10.80501 -10.74016 -10.68904 -10.40102 -10.10142 -10.02121 -9.53838 -9.16907 -8.99932 -8.43399 -7.14814 -5.98684 -4.00653 3.35779 3.39632 3.42687 3.61480 4.46313 4.69277 4.71523 4.86332 4.91000 5.05051 5.11826 5.22641 5.31894 5.36391 5.36948 5.43835 5.55559 5.61461 5.61975 5.69864 5.79907 5.81628 5.89968 5.91595 6.00820 6.06943 6.14022 6.19959 6.21626 6.29949 6.38073 6.52229 6.59930 6.78969 6.84334 7.34109 7.43632 7.51296 7.83901 8.19577 8.48783 8.68991 9.08927 9.63973 11.12263 Molecular weight = 255.19amu Principal moments of inertia in cm(-1) A = 0.031736 B = 0.004051 C = 0.003843 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 882.067934 B = 6909.372059 C = 7283.406979 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C -0.096 4.096 3 C -0.145 4.145 4 C 0.067 3.933 5 O -0.358 6.358 6 C 0.072 3.928 7 H 0.065 0.935 8 C -0.191 4.191 9 C 0.090 3.910 10 H 0.092 0.908 11 N -0.676 5.676 12 C 0.195 3.805 13 C -0.514 4.514 14 H 0.061 0.939 15 C 0.055 3.945 16 N -0.898 5.898 17 Si 0.898 3.102 18 H -0.276 1.276 19 H -0.288 1.288 20 H -0.278 1.278 21 C -0.075 4.075 22 C -0.127 4.127 23 C -0.118 4.118 24 H 0.065 0.935 25 H 0.050 0.950 26 H 0.051 0.949 27 H 0.078 0.922 28 H 0.055 0.945 29 H 0.060 0.940 30 H 0.054 0.946 31 H 0.045 0.955 32 H 0.045 0.955 33 H 0.084 0.916 34 H 0.066 0.934 35 H 0.329 0.671 36 H -0.015 1.015 37 H 0.027 0.973 38 H 0.261 0.739 39 H 0.057 0.943 40 H 0.043 0.957 41 H 0.062 0.938 42 H 0.049 0.951 43 H 0.044 0.956 44 H 0.078 0.922 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.024 19.250 4.873 20.261 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.115 4.115 3 C -0.203 4.203 4 C -0.010 4.010 5 O -0.277 6.277 6 C 0.013 3.987 7 H 0.083 0.917 8 C -0.230 4.230 9 C -0.022 4.022 10 H 0.110 0.890 11 N -0.304 5.304 12 C 0.068 3.932 13 C -0.553 4.553 14 H 0.079 0.921 15 C -0.146 4.146 16 N -0.537 5.537 17 Si 0.726 3.274 18 H -0.202 1.202 19 H -0.214 1.214 20 H -0.203 1.203 21 C -0.076 4.076 22 C -0.184 4.184 23 C -0.175 4.175 24 H 0.084 0.916 25 H 0.069 0.931 26 H 0.070 0.930 27 H 0.097 0.903 28 H 0.074 0.926 29 H 0.079 0.921 30 H 0.073 0.927 31 H 0.063 0.937 32 H 0.063 0.937 33 H 0.103 0.897 34 H 0.085 0.915 35 H 0.146 0.854 36 H 0.003 0.997 37 H 0.045 0.955 38 H 0.071 0.929 39 H 0.076 0.924 40 H 0.062 0.938 41 H 0.081 0.919 42 H 0.068 0.932 43 H 0.063 0.937 44 H 0.097 0.903 Dipole moment (debyes) X Y Z Total from point charges -4.748 18.848 4.510 19.953 hybrid contribution 1.410 -0.471 0.197 1.500 sum -3.337 18.377 4.707 19.261 Atomic orbital electron populations 1.21780 0.94582 1.02634 1.01082 1.21097 0.96787 0.95429 0.98173 1.21782 1.01029 0.95431 1.02015 1.22575 0.98217 0.82572 0.97640 1.87869 1.77524 1.19469 1.42814 1.23101 0.96200 0.91448 0.87949 0.91733 1.24200 0.97846 0.99198 1.01801 1.22919 0.93499 0.87951 0.97783 0.88971 1.60507 1.48643 1.06981 1.14271 1.19549 0.94209 0.90944 0.88477 1.21175 1.44969 0.94597 0.94547 0.92101 1.24992 0.95695 0.99071 0.94823 1.69961 1.47876 1.33718 1.02185 0.86560 0.78693 0.83969 0.78145 1.20182 1.21390 1.20326 1.22253 0.95250 0.93474 0.96668 1.21528 0.94649 1.01371 1.00842 1.21421 1.00759 1.02468 0.92841 0.91592 0.93087 0.92995 0.90312 0.92598 0.92137 0.92651 0.93685 0.93713 0.89708 0.91517 0.85388 0.99694 0.95514 0.92918 0.92397 0.93826 0.91920 0.93208 0.93683 0.90276 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.39 9.09 37.15 0.34 -1.05 16 2 C -0.10 -0.95 3.16 -90.62 -0.29 -1.24 16 3 C -0.15 -1.13 9.19 37.16 0.34 -0.78 16 4 C 0.07 0.74 5.17 37.16 0.19 0.94 16 5 O -0.36 -5.06 8.34 -35.23 -0.29 -5.35 16 6 C 0.07 1.01 3.77 -25.92 -0.10 0.91 16 7 H 0.06 0.81 7.85 -51.93 -0.41 0.40 16 8 C -0.19 -3.03 7.19 -25.93 -0.19 -3.22 16 9 C 0.09 1.67 3.54 -66.90 -0.24 1.43 16 10 H 0.09 1.90 7.85 -51.93 -0.41 1.49 16 11 N -0.68 -14.58 5.57 -107.13 -0.60 -15.18 16 12 C 0.19 5.21 5.30 -4.98 -0.03 5.18 16 13 C -0.51 -14.77 9.32 -34.44 -0.32 -15.09 16 14 H 0.06 1.71 7.81 -52.49 -0.41 1.30 16 15 C 0.06 1.61 5.46 -17.82 -0.10 1.51 16 16 N -0.90 -27.29 13.29 55.43 0.74 -26.55 16 17 Si 0.90 21.97 29.54 -169.99 -5.02 16.95 16 18 H -0.28 -6.67 7.11 56.52 0.40 -6.27 16 19 H -0.29 -6.97 7.11 56.52 0.40 -6.57 16 20 H -0.28 -6.64 7.11 56.52 0.40 -6.23 16 21 C -0.08 -1.15 1.35 -153.69 -0.21 -1.36 16 22 C -0.13 -1.87 9.04 37.16 0.34 -1.54 16 23 C -0.12 -1.65 8.37 37.16 0.31 -1.34 16 24 H 0.07 0.74 7.82 -51.93 -0.41 0.33 16 25 H 0.05 0.45 8.14 -51.93 -0.42 0.03 16 26 H 0.05 0.44 8.14 -51.93 -0.42 0.02 16 27 H 0.08 0.86 8.14 -51.93 -0.42 0.44 16 28 H 0.05 0.41 8.14 -51.93 -0.42 -0.01 16 29 H 0.06 0.42 8.14 -51.93 -0.42 0.00 16 30 H 0.05 0.39 8.14 -51.93 -0.42 -0.03 16 31 H 0.04 0.46 8.14 -51.93 -0.42 0.04 16 32 H 0.04 0.48 8.14 -51.93 -0.42 0.06 16 33 H 0.08 1.27 7.34 -51.93 -0.38 0.89 16 34 H 0.07 1.10 8.14 -51.93 -0.42 0.68 16 35 H 0.33 6.77 8.04 -39.30 -0.32 6.45 16 36 H -0.01 -0.42 8.14 -51.93 -0.42 -0.84 16 37 H 0.03 0.78 8.13 -51.93 -0.42 0.36 16 38 H 0.26 7.50 8.31 -40.82 -0.34 7.16 16 39 H 0.06 0.92 8.14 -51.93 -0.42 0.49 16 40 H 0.04 0.57 8.14 -51.93 -0.42 0.14 16 41 H 0.06 0.95 6.96 -51.93 -0.36 0.59 16 42 H 0.05 0.66 7.34 -51.93 -0.38 0.28 16 43 H 0.04 0.55 8.14 -51.93 -0.42 0.12 16 44 H 0.08 1.24 7.77 -51.93 -0.40 0.84 16 LS Contribution 349.08 15.07 5.26 5.26 Total: -1.00 -29.97 349.08 -8.38 -38.35 By element: Atomic # 1 Polarization: 10.69 SS G_CDS: -8.53 Total: 2.16 kcal Atomic # 6 Polarization: -15.70 SS G_CDS: 0.06 Total: -15.64 kcal Atomic # 7 Polarization: -41.87 SS G_CDS: 0.14 Total: -41.73 kcal Atomic # 8 Polarization: -5.06 SS G_CDS: -0.29 Total: -5.35 kcal Atomic # 14 Polarization: 21.97 SS G_CDS: -5.02 Total: 16.95 kcal Total LS contribution 5.26 Total: 5.26 kcal Total: -29.97 -8.38 -38.35 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000082923061.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -10.137 kcal (2) G-P(sol) polarization free energy of solvation -29.969 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -40.106 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.382 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.352 kcal (6) G-S(sol) free energy of system = (1) + (5) -48.488 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.39 seconds