Wall clock time and date at job start Mon Mar 30 2020 07:24:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 C 1.53008 * 109.46922 * 2 1 4 4 C 1.52997 * 109.47117 * 119.99468 * 2 1 3 5 5 O 1.42904 * 109.46971 * 65.00117 * 4 2 1 6 6 C 1.42902 * 113.99950 * 179.97438 * 5 4 2 7 7 H 1.09001 * 112.84792 * 21.70062 * 6 5 4 8 8 C 1.53775 * 113.61729 * 250.49549 * 6 5 4 9 9 C 1.53775 * 87.08238 * 270.88695 * 8 6 5 10 10 H 1.08998 * 113.61510 * 89.20214 * 9 8 6 11 11 N 1.46907 * 113.61288 * 220.01707 * 9 8 6 12 12 C 1.46895 * 110.99969 * 255.49210 * 11 9 8 13 13 C 1.50700 * 109.47051 * 180.02562 * 12 11 9 14 14 H 1.07999 * 119.99988 * 0.02562 * 13 12 11 15 15 C 1.37885 * 120.00047 * 180.02562 * 13 12 11 16 16 N 1.31518 * 119.99792 * 359.72305 * 15 13 12 17 17 Si 1.86795 * 120.00009 * 180.02562 * 15 13 12 18 18 H 1.48503 * 109.47163 * 59.99902 * 17 15 13 19 19 H 1.48495 * 109.47159 * 179.97438 * 17 15 13 20 20 H 1.48505 * 109.47290 * 299.99897 * 17 15 13 21 21 C 1.53778 * 87.08434 * 334.56741 * 9 8 6 22 22 C 1.53000 * 113.61786 * 139.97907 * 21 9 8 23 23 C 1.53004 * 113.61438 * 270.88899 * 21 9 8 24 24 H 1.09001 * 109.46936 * 180.02562 * 1 2 3 25 25 H 1.09005 * 109.47389 * 300.00357 * 1 2 3 26 26 H 1.09002 * 109.47368 * 60.00506 * 1 2 3 27 27 H 1.08996 * 109.47409 * 239.99820 * 2 1 3 28 28 H 1.08999 * 109.46922 * 180.02562 * 3 2 1 29 29 H 1.08999 * 109.47055 * 299.99553 * 3 2 1 30 30 H 1.08996 * 109.47226 * 59.99708 * 3 2 1 31 31 H 1.09001 * 109.47362 * 305.00493 * 4 2 1 32 32 H 1.09000 * 109.47181 * 185.00279 * 4 2 1 33 33 H 1.08995 * 113.61247 * 156.33574 * 8 6 5 34 34 H 1.09003 * 113.61074 * 25.43606 * 8 6 5 35 35 H 1.00893 * 111.00026 * 19.45223 * 11 9 8 36 36 H 1.09004 * 109.47210 * 60.00310 * 12 11 9 37 37 H 1.08997 * 109.47605 * 300.00670 * 12 11 9 38 38 H 0.97000 * 119.99468 * 179.97438 * 16 15 13 39 39 H 1.09005 * 109.46706 * 59.99985 * 22 21 9 40 40 H 1.08996 * 109.47142 * 180.02562 * 22 21 9 41 41 H 1.08997 * 109.47086 * 300.00701 * 22 21 9 42 42 H 1.08997 * 109.47110 * 59.99628 * 23 21 9 43 43 H 1.09000 * 109.47189 * 179.97438 * 23 21 9 44 44 H 1.09003 * 109.46843 * 299.99403 * 23 21 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0399 1.4426 0.0000 4 6 2.0399 -0.7211 1.2493 5 8 1.6619 -2.0981 1.1921 6 6 2.0923 -2.8662 2.3177 7 1 2.2979 -2.2528 3.1950 8 6 3.2131 -3.8663 1.9888 9 6 2.1046 -4.8783 1.6546 10 1 1.7808 -4.8436 0.6144 11 7 2.3943 -6.2424 2.1165 12 6 2.7905 -7.1049 0.9954 13 6 3.0785 -8.4929 1.5067 14 1 2.9769 -8.7125 2.5593 15 6 3.4717 -9.4825 0.6308 16 7 3.5902 -9.2165 -0.6517 17 14 3.8280 -11.2032 1.2645 18 1 2.6087 -11.7564 1.9070 19 1 4.2286 -12.0750 0.1312 20 1 4.9292 -11.1463 2.2592 21 6 1.1993 -4.0835 2.6104 22 6 -0.2365 -3.9260 2.1057 23 6 1.2713 -4.5614 4.0621 24 1 -0.3633 -1.0277 0.0005 25 1 -0.3634 0.5139 0.8900 26 1 -0.3634 0.5138 -0.8900 27 1 1.8933 -0.5138 -0.8899 28 1 3.1299 1.4426 -0.0005 29 1 1.6766 1.9564 -0.8900 30 1 1.6766 1.9564 0.8899 31 1 1.6053 -0.2616 2.1370 32 1 3.1262 -0.6442 1.2952 33 1 3.8149 -4.1474 2.8530 34 1 3.8159 -3.5787 1.1274 35 1 3.1011 -6.2378 2.8366 36 1 3.6849 -6.6986 0.5228 37 1 1.9817 -7.1473 0.2660 38 1 3.8671 -9.9126 -1.2678 39 1 -0.6858 -4.9105 1.9755 40 1 -0.8159 -3.3547 2.8310 41 1 -0.2303 -3.4002 1.1510 42 1 2.2940 -4.4641 4.4263 43 1 0.6074 -3.9546 4.6778 44 1 0.9641 -5.6059 4.1164 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000082923061.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:24:14 Heat of formation + Delta-G solvation = -66.439791 kcal Electronic energy + Delta-G solvation = -19712.167712 eV Core-core repulsion = 16856.642222 eV Total energy + Delta-G solvation = -2855.525490 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 255.194 amu Computer time = 0.48 seconds Orbital eigenvalues (eV) -41.27101 -38.37851 -36.12649 -35.24597 -33.76147 -31.22283 -28.60792 -28.25547 -27.97651 -26.83905 -24.78776 -23.39284 -23.15725 -21.16448 -19.60568 -18.42753 -17.42912 -16.80466 -16.75724 -16.25035 -15.72662 -15.53673 -15.33222 -14.79203 -14.58132 -14.24495 -13.94061 -13.73387 -13.43209 -13.21424 -13.07889 -13.04769 -12.91295 -12.81187 -12.68766 -12.56146 -12.39892 -12.12266 -12.01854 -11.86602 -11.69835 -11.53311 -11.44069 -11.23177 -10.70705 -10.64607 -10.27927 -8.96315 -8.21827 -6.33960 1.40554 1.44898 1.52770 2.40155 2.61418 3.10851 3.53091 3.59982 3.70060 3.90784 3.97806 4.04376 4.18889 4.27237 4.34917 4.43791 4.55964 4.62798 4.65596 4.73310 4.81770 4.83798 4.89696 4.95277 4.98954 5.01878 5.05927 5.08801 5.14077 5.21326 5.23845 5.26419 5.36322 5.41129 5.46780 5.56732 5.61002 5.65943 6.03480 6.40965 6.50850 6.75680 6.93327 7.37406 8.89615 Molecular weight = 255.19amu Principal moments of inertia in cm(-1) A = 0.031736 B = 0.004051 C = 0.003843 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 882.067934 B = 6909.372059 C = 7283.406979 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C -0.098 4.098 3 C -0.140 4.140 4 C 0.061 3.939 5 O -0.379 6.379 6 C 0.088 3.912 7 H 0.096 0.904 8 C -0.186 4.186 9 C 0.071 3.929 10 H 0.058 0.942 11 N -0.669 5.669 12 C 0.212 3.788 13 C -0.535 4.535 14 H 0.067 0.933 15 C -0.001 4.001 16 N -0.936 5.936 17 Si 0.976 3.024 18 H -0.268 1.268 19 H -0.284 1.284 20 H -0.264 1.264 21 C -0.069 4.069 22 C -0.123 4.123 23 C -0.114 4.114 24 H 0.043 0.957 25 H 0.062 0.938 26 H 0.060 0.940 27 H 0.060 0.940 28 H 0.058 0.942 29 H 0.067 0.933 30 H 0.066 0.934 31 H 0.063 0.937 32 H 0.049 0.951 33 H 0.099 0.901 34 H 0.053 0.947 35 H 0.336 0.664 36 H -0.045 1.045 37 H -0.009 1.009 38 H 0.265 0.735 39 H 0.039 0.961 40 H 0.068 0.932 41 H 0.053 0.947 42 H 0.060 0.940 43 H 0.071 0.929 44 H 0.058 0.942 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.974 20.329 7.073 21.888 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C -0.116 4.116 3 C -0.197 4.197 4 C -0.015 4.015 5 O -0.298 6.298 6 C 0.029 3.971 7 H 0.114 0.886 8 C -0.225 4.225 9 C -0.041 4.041 10 H 0.077 0.923 11 N -0.298 5.298 12 C 0.084 3.916 13 C -0.574 4.574 14 H 0.085 0.915 15 C -0.199 4.199 16 N -0.577 5.577 17 Si 0.800 3.200 18 H -0.193 1.193 19 H -0.209 1.209 20 H -0.189 1.189 21 C -0.070 4.070 22 C -0.180 4.180 23 C -0.171 4.171 24 H 0.063 0.937 25 H 0.081 0.919 26 H 0.079 0.921 27 H 0.079 0.921 28 H 0.077 0.923 29 H 0.086 0.914 30 H 0.085 0.915 31 H 0.081 0.919 32 H 0.067 0.933 33 H 0.118 0.882 34 H 0.072 0.928 35 H 0.155 0.845 36 H -0.027 1.027 37 H 0.009 0.991 38 H 0.073 0.927 39 H 0.058 0.942 40 H 0.087 0.913 41 H 0.072 0.928 42 H 0.079 0.921 43 H 0.090 0.910 44 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges -4.704 19.960 6.725 21.582 hybrid contribution 1.369 -0.736 -0.557 1.651 sum -3.336 19.224 6.168 20.463 Atomic orbital electron populations 1.21753 0.94431 1.01511 1.02128 1.21128 0.96946 0.96594 0.96970 1.21744 1.01205 0.93793 1.02965 1.22797 0.98699 0.81122 0.98892 1.87874 1.77618 1.21149 1.43116 1.22936 0.94009 0.91248 0.88870 0.88642 1.24166 0.97648 0.98859 1.01835 1.23034 0.96678 0.87135 0.97203 0.92340 1.60426 1.48349 1.08411 1.12569 1.19146 0.91461 0.91767 0.89188 1.21545 1.45293 0.95534 0.94986 0.91484 1.26014 0.95097 1.03906 0.94898 1.70111 1.48512 1.35361 1.03677 0.85346 0.79008 0.77906 0.77784 1.19274 1.20891 1.18861 1.22247 0.94985 0.93117 0.96646 1.21483 0.94699 1.00605 1.01198 1.21399 1.02121 1.01630 0.91949 0.93745 0.91941 0.92071 0.92124 0.92311 0.91391 0.91505 0.91918 0.93307 0.88222 0.92799 0.84542 1.02709 0.99128 0.92672 0.94193 0.91275 0.92831 0.92128 0.90965 0.92307 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.57 9.09 71.98 0.65 -1.91 16 2 C -0.10 -1.83 3.16 -10.79 -0.03 -1.86 16 3 C -0.14 -1.87 9.19 71.98 0.66 -1.21 16 4 C 0.06 1.25 5.17 71.98 0.37 1.62 16 5 O -0.38 -10.38 8.34 -148.98 -1.24 -11.62 16 6 C 0.09 2.32 3.77 31.12 0.12 2.44 16 7 H 0.10 2.00 7.85 -2.39 -0.02 1.98 16 8 C -0.19 -5.83 7.19 31.12 0.22 -5.61 16 9 C 0.07 2.69 3.54 45.44 0.16 2.85 16 10 H 0.06 2.61 7.85 -2.39 -0.02 2.59 16 11 N -0.67 -29.75 5.57 -492.87 -2.74 -32.50 16 12 C 0.21 11.96 5.30 85.56 0.45 12.41 16 13 C -0.54 -31.41 9.32 25.60 0.24 -31.17 16 14 H 0.07 3.77 7.81 -2.91 -0.02 3.74 16 15 C 0.00 -0.07 5.46 84.66 0.46 0.39 16 16 N -0.94 -58.42 13.29 21.45 0.28 -58.14 16 17 Si 0.98 45.13 29.54 68.60 2.03 47.15 16 18 H -0.27 -11.97 7.11 99.48 0.71 -11.26 16 19 H -0.28 -12.80 7.11 99.48 0.71 -12.10 16 20 H -0.26 -11.57 7.11 99.48 0.71 -10.87 16 21 C -0.07 -2.04 1.35 -51.65 -0.07 -2.11 16 22 C -0.12 -3.57 9.04 71.98 0.65 -2.92 16 23 C -0.11 -2.93 8.37 71.98 0.60 -2.33 16 24 H 0.04 0.99 7.82 -2.39 -0.02 0.97 16 25 H 0.06 0.98 8.14 -2.38 -0.02 0.96 16 26 H 0.06 0.98 8.14 -2.39 -0.02 0.96 16 27 H 0.06 1.33 8.14 -2.39 -0.02 1.31 16 28 H 0.06 0.76 8.14 -2.39 -0.02 0.74 16 29 H 0.07 0.82 8.14 -2.39 -0.02 0.80 16 30 H 0.07 0.76 8.14 -2.39 -0.02 0.74 16 31 H 0.06 1.08 8.14 -2.39 -0.02 1.06 16 32 H 0.05 0.96 8.14 -2.39 -0.02 0.94 16 33 H 0.10 2.83 7.34 -2.39 -0.02 2.81 16 34 H 0.05 1.81 8.14 -2.39 -0.02 1.79 16 35 H 0.34 13.95 8.04 -89.70 -0.72 13.23 16 36 H -0.04 -2.73 8.14 -2.38 -0.02 -2.75 16 37 H -0.01 -0.59 8.13 -2.39 -0.02 -0.61 16 38 H 0.26 15.48 8.31 -92.71 -0.77 14.71 16 39 H 0.04 1.28 8.14 -2.38 -0.02 1.26 16 40 H 0.07 1.65 8.14 -2.39 -0.02 1.63 16 41 H 0.05 1.64 6.96 -2.39 -0.02 1.62 16 42 H 0.06 1.42 7.34 -2.39 -0.02 1.41 16 43 H 0.07 1.49 8.14 -2.39 -0.02 1.47 16 44 H 0.06 1.77 7.77 -2.39 -0.02 1.75 16 Total: -1.00 -66.64 349.08 3.03 -63.61 By element: Atomic # 1 Polarization: 20.67 SS G_CDS: 0.21 Total: 20.88 kcal Atomic # 6 Polarization: -33.88 SS G_CDS: 4.49 Total: -29.39 kcal Atomic # 7 Polarization: -88.18 SS G_CDS: -2.46 Total: -90.63 kcal Atomic # 8 Polarization: -10.38 SS G_CDS: -1.24 Total: -11.62 kcal Atomic # 14 Polarization: 45.13 SS G_CDS: 2.03 Total: 47.15 kcal Total: -66.64 3.03 -63.61 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000082923061.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -2.827 kcal (2) G-P(sol) polarization free energy of solvation -66.640 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -69.467 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.027 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.613 kcal (6) G-S(sol) free energy of system = (1) + (5) -66.440 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.48 seconds