Wall clock time and date at job start Mon Mar 30 2020 07:24:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 C 1.52999 * 109.46626 * 2 1 4 4 C 1.52997 * 109.47127 * 240.00461 * 2 1 3 5 5 O 1.42898 * 109.47175 * 184.99790 * 4 2 1 6 6 C 1.42905 * 113.99973 * 179.97438 * 5 4 2 7 7 H 1.08994 * 112.85242 * 338.31088 * 6 5 4 8 8 C 1.53779 * 113.61182 * 109.50885 * 6 5 4 9 9 C 1.53777 * 87.08198 * 139.97937 * 8 6 5 10 10 H 1.08996 * 113.61549 * 89.11590 * 9 8 6 11 11 N 1.46896 * 113.61457 * 219.93074 * 9 8 6 12 12 C 1.46906 * 111.00453 * 255.49506 * 11 9 8 13 13 C 1.50696 * 109.47452 * 179.97438 * 12 11 9 14 14 H 1.08002 * 120.00028 * 0.02562 * 13 12 11 15 15 C 1.37872 * 119.99911 * 179.97438 * 13 12 11 16 16 N 1.31512 * 120.00475 * 0.02562 * 15 13 12 17 17 Si 1.86810 * 119.99966 * 180.02562 * 15 13 12 18 18 H 1.48503 * 109.46990 * 90.00094 * 17 15 13 19 19 H 1.48492 * 109.47148 * 210.00432 * 17 15 13 20 20 H 1.48506 * 109.46859 * 330.00295 * 17 15 13 21 21 C 1.53781 * 113.61194 * 207.00276 * 6 5 4 22 22 C 1.52998 * 113.61623 * 334.56541 * 21 6 5 23 23 C 1.52996 * 113.61744 * 105.47432 * 21 6 5 24 24 H 1.09001 * 109.46801 * 59.99811 * 1 2 3 25 25 H 1.09001 * 109.46998 * 179.97438 * 1 2 3 26 26 H 1.09000 * 109.47050 * 299.99699 * 1 2 3 27 27 H 1.08993 * 109.46955 * 120.00472 * 2 1 3 28 28 H 1.09000 * 109.47160 * 60.00369 * 3 2 1 29 29 H 1.09002 * 109.46719 * 180.02562 * 3 2 1 30 30 H 1.08993 * 109.47839 * 299.99931 * 3 2 1 31 31 H 1.09002 * 109.47196 * 304.99671 * 4 2 1 32 32 H 1.09001 * 109.47630 * 64.99767 * 4 2 1 33 33 H 1.09002 * 113.61222 * 254.52601 * 8 6 5 34 34 H 1.09003 * 113.61662 * 25.42408 * 8 6 5 35 35 H 1.00900 * 111.00206 * 131.54144 * 11 9 8 36 36 H 1.08999 * 109.46504 * 300.00110 * 12 11 9 37 37 H 1.09003 * 109.46649 * 60.00013 * 12 11 9 38 38 H 0.96996 * 120.00107 * 179.97438 * 16 15 13 39 39 H 1.08999 * 109.47080 * 79.50450 * 22 21 6 40 40 H 1.08998 * 109.47654 * 199.50687 * 22 21 6 41 41 H 1.08998 * 109.47536 * 319.50940 * 22 21 6 42 42 H 1.08998 * 109.47087 * 40.48797 * 23 21 6 43 43 H 1.08992 * 109.47574 * 160.49517 * 23 21 6 44 44 H 1.09001 * 109.46779 * 280.49657 * 23 21 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 6 2.0401 -0.7211 -1.2493 5 8 3.4642 -0.8236 -1.1921 6 6 4.0450 -1.4854 -2.3177 7 1 3.3372 -2.1261 -2.8436 8 6 4.8326 -0.5457 -3.2458 9 6 5.8709 -1.6725 -3.3759 10 1 5.6633 -2.3654 -4.1913 11 7 7.2603 -1.1958 -3.3723 12 6 7.8322 -1.2299 -4.7251 13 6 9.2547 -0.7344 -4.6818 14 1 9.6906 -0.4254 -3.7431 15 6 10.0001 -0.6765 -5.8402 16 7 9.4696 -1.0532 -6.9831 17 14 11.7637 -0.0628 -5.7864 18 1 12.6792 -1.2078 -5.5492 19 1 12.1030 0.5824 -7.0800 20 1 11.9109 0.9246 -4.6870 21 6 5.3852 -2.1715 -2.0048 22 6 6.1330 -1.5467 -0.8253 23 6 5.2857 -3.6951 -1.9071 24 1 -0.3633 0.5139 -0.8900 25 1 -0.3633 -1.0277 -0.0005 26 1 -0.3633 0.5138 0.8900 27 1 1.8933 -0.5139 0.8899 28 1 1.6766 1.9563 0.8900 29 1 3.1300 1.4425 -0.0005 30 1 1.6767 1.9564 -0.8899 31 1 1.6055 -1.7197 -1.2953 32 1 1.7517 -0.1582 -2.1370 33 1 4.3155 -0.3186 -4.1781 34 1 5.2141 0.3440 -2.7447 35 1 7.8241 -1.7295 -2.7279 36 1 7.8147 -2.2528 -5.1011 37 1 7.2450 -0.5903 -5.3840 38 1 9.9939 -1.0121 -7.7981 39 1 5.7016 -1.9050 0.1093 40 1 7.1849 -1.8285 -0.8715 41 1 6.0452 -0.4613 -0.8732 42 1 4.6233 -4.0668 -2.6889 43 1 6.2762 -4.1327 -2.0317 44 1 4.8867 -3.9713 -0.9311 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000082923062.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:24:17 Heat of formation + Delta-G solvation = -50.240460 kcal Electronic energy + Delta-G solvation = -19621.704498 eV Core-core repulsion = 16766.881463 eV Total energy + Delta-G solvation = -2854.823034 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 255.194 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -39.93544 -37.38403 -34.79604 -33.67317 -31.76618 -30.11547 -27.30548 -27.20211 -26.71561 -25.86746 -22.91764 -22.17511 -21.09558 -20.37866 -18.03361 -16.81967 -16.20811 -15.68083 -15.18958 -14.84476 -14.51091 -14.40714 -13.96596 -13.60321 -13.00673 -12.86433 -12.70000 -12.43045 -12.33152 -12.18881 -11.89699 -11.79155 -11.56254 -11.33435 -11.23123 -11.18136 -10.91358 -10.84485 -10.73779 -10.67809 -10.33339 -10.21801 -9.98094 -9.63274 -9.09299 -9.04530 -8.46042 -7.23849 -6.00677 -4.02341 3.33378 3.39361 3.44315 3.74900 4.45591 4.66625 4.73689 4.79469 4.86373 4.96528 5.11233 5.28159 5.32638 5.35487 5.39026 5.44194 5.50411 5.51937 5.59563 5.71400 5.71826 5.80258 5.86018 5.91051 5.92097 6.09236 6.14110 6.17261 6.25062 6.27239 6.34932 6.36303 6.57508 6.76350 6.84256 7.32578 7.45031 7.48420 7.83301 8.17862 8.45953 8.66850 9.07496 9.62583 11.10488 Molecular weight = 255.19amu Principal moments of inertia in cm(-1) A = 0.034459 B = 0.003854 C = 0.003737 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 812.371923 B = 7263.704900 C = 7490.429633 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.095 4.095 3 C -0.144 4.144 4 C 0.065 3.935 5 O -0.365 6.365 6 C 0.069 3.931 7 H 0.078 0.922 8 C -0.139 4.139 9 C 0.072 3.928 10 H 0.062 0.938 11 N -0.671 5.671 12 C 0.194 3.806 13 C -0.512 4.512 14 H 0.062 0.938 15 C 0.055 3.945 16 N -0.899 5.899 17 Si 0.898 3.102 18 H -0.281 1.281 19 H -0.287 1.287 20 H -0.273 1.273 21 C -0.084 4.084 22 C -0.105 4.105 23 C -0.137 4.137 24 H 0.055 0.945 25 H 0.054 0.946 26 H 0.059 0.941 27 H 0.076 0.924 28 H 0.050 0.950 29 H 0.065 0.935 30 H 0.051 0.949 31 H 0.042 0.958 32 H 0.045 0.955 33 H 0.058 0.942 34 H 0.095 0.905 35 H 0.330 0.670 36 H -0.015 1.015 37 H 0.027 0.973 38 H 0.261 0.739 39 H 0.047 0.953 40 H 0.056 0.944 41 H 0.065 0.935 42 H 0.051 0.949 43 H 0.058 0.942 44 H 0.053 0.947 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.269 -1.280 12.665 20.657 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.113 4.113 3 C -0.201 4.201 4 C -0.012 4.012 5 O -0.284 6.284 6 C 0.011 3.989 7 H 0.096 0.904 8 C -0.178 4.178 9 C -0.040 4.040 10 H 0.079 0.921 11 N -0.302 5.302 12 C 0.067 3.933 13 C -0.551 4.551 14 H 0.080 0.920 15 C -0.146 4.146 16 N -0.538 5.538 17 Si 0.726 3.274 18 H -0.208 1.208 19 H -0.213 1.213 20 H -0.197 1.197 21 C -0.085 4.085 22 C -0.163 4.163 23 C -0.195 4.195 24 H 0.074 0.926 25 H 0.073 0.927 26 H 0.078 0.922 27 H 0.094 0.906 28 H 0.069 0.931 29 H 0.085 0.915 30 H 0.070 0.930 31 H 0.061 0.939 32 H 0.064 0.936 33 H 0.077 0.923 34 H 0.114 0.886 35 H 0.148 0.852 36 H 0.003 0.997 37 H 0.045 0.955 38 H 0.070 0.930 39 H 0.067 0.933 40 H 0.075 0.925 41 H 0.084 0.916 42 H 0.070 0.930 43 H 0.077 0.923 44 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges -16.280 -0.554 12.574 20.578 hybrid contribution 0.855 -0.795 -0.669 1.345 sum -15.425 -1.349 11.905 19.532 Atomic orbital electron populations 1.21791 0.94708 1.01757 1.02070 1.21083 0.95122 0.97067 0.98047 1.21776 1.02279 0.94956 1.01117 1.22553 0.82379 0.98595 0.97700 1.87939 1.18805 1.78384 1.43266 1.23746 0.92969 0.94689 0.87470 0.90398 1.23533 0.96662 0.99111 0.98480 1.22733 0.91689 0.95057 0.94483 0.92059 1.60777 1.00061 1.57256 1.12106 1.19591 0.94590 0.94960 0.84183 1.21200 0.96862 1.42839 0.94216 0.91982 1.24988 0.98614 0.95603 0.95394 1.69963 1.36963 1.48291 0.98628 0.86498 0.84579 0.78951 0.77384 1.20765 1.21281 1.19747 1.22388 0.94674 0.94397 0.96995 1.21203 0.98808 1.01362 0.94910 1.21764 1.01797 0.94767 1.01142 0.92569 0.92697 0.92206 0.90571 0.93103 0.91545 0.92963 0.93938 0.93627 0.92324 0.88625 0.85155 0.99745 0.95497 0.92971 0.93349 0.92528 0.91578 0.93001 0.92283 0.92774 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.09 9.19 37.16 0.34 -0.75 16 2 C -0.09 -0.90 3.16 -90.62 -0.29 -1.19 16 3 C -0.14 -1.41 9.09 37.16 0.34 -1.08 16 4 C 0.06 0.71 5.17 37.16 0.19 0.90 16 5 O -0.37 -5.00 9.04 -35.23 -0.32 -5.32 16 6 C 0.07 0.98 3.71 -25.92 -0.10 0.88 16 7 H 0.08 1.00 7.76 -51.93 -0.40 0.60 16 8 C -0.14 -2.31 7.36 -25.92 -0.19 -2.50 16 9 C 0.07 1.30 3.56 -66.90 -0.24 1.06 16 10 H 0.06 1.16 7.85 -51.93 -0.41 0.75 16 11 N -0.67 -14.52 6.00 -107.13 -0.64 -15.16 16 12 C 0.19 5.14 5.30 -4.97 -0.03 5.12 16 13 C -0.51 -14.70 9.32 -34.44 -0.32 -15.03 16 14 H 0.06 1.75 7.81 -52.49 -0.41 1.34 16 15 C 0.06 1.60 5.46 -17.82 -0.10 1.50 16 16 N -0.90 -27.17 13.29 55.43 0.74 -26.43 16 17 Si 0.90 21.93 29.54 -169.99 -5.02 16.91 16 18 H -0.28 -6.75 7.11 56.52 0.40 -6.35 16 19 H -0.29 -6.94 7.11 56.52 0.40 -6.54 16 20 H -0.27 -6.56 7.11 56.52 0.40 -6.16 16 21 C -0.08 -1.25 1.26 -153.70 -0.19 -1.44 16 22 C -0.11 -1.57 7.74 37.16 0.29 -1.28 16 23 C -0.14 -1.80 9.17 37.16 0.34 -1.46 16 24 H 0.06 0.41 8.14 -51.93 -0.42 -0.02 16 25 H 0.05 0.38 8.14 -51.93 -0.42 -0.04 16 26 H 0.06 0.40 8.14 -51.93 -0.42 -0.02 16 27 H 0.08 0.75 8.14 -51.93 -0.42 0.33 16 28 H 0.05 0.43 8.14 -51.93 -0.42 0.01 16 29 H 0.07 0.76 7.82 -51.93 -0.41 0.36 16 30 H 0.05 0.50 8.14 -51.93 -0.42 0.08 16 31 H 0.04 0.43 8.14 -51.93 -0.42 0.01 16 32 H 0.05 0.49 8.14 -51.93 -0.42 0.07 16 33 H 0.06 0.95 8.14 -51.93 -0.42 0.52 16 34 H 0.10 1.72 7.63 -51.93 -0.40 1.32 16 35 H 0.33 6.88 7.16 -39.29 -0.28 6.60 16 36 H -0.02 -0.43 8.13 -51.93 -0.42 -0.85 16 37 H 0.03 0.78 8.14 -51.93 -0.42 0.35 16 38 H 0.26 7.43 8.31 -40.82 -0.34 7.09 16 39 H 0.05 0.66 8.14 -51.93 -0.42 0.23 16 40 H 0.06 0.85 6.93 -51.93 -0.36 0.49 16 41 H 0.07 1.07 7.25 -51.93 -0.38 0.69 16 42 H 0.05 0.64 8.01 -51.93 -0.42 0.22 16 43 H 0.06 0.79 8.14 -51.93 -0.42 0.37 16 44 H 0.05 0.64 8.14 -51.93 -0.42 0.22 16 LS Contribution 349.17 15.07 5.26 5.26 Total: -1.00 -29.89 349.17 -8.44 -38.33 By element: Atomic # 1 Polarization: 10.19 SS G_CDS: -8.51 Total: 1.68 kcal Atomic # 6 Polarization: -15.32 SS G_CDS: 0.05 Total: -15.27 kcal Atomic # 7 Polarization: -41.68 SS G_CDS: 0.09 Total: -41.59 kcal Atomic # 8 Polarization: -5.00 SS G_CDS: -0.32 Total: -5.32 kcal Atomic # 14 Polarization: 21.93 SS G_CDS: -5.02 Total: 16.91 kcal Total LS contribution 5.26 Total: 5.26 kcal Total: -29.89 -8.44 -38.33 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000082923062.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -11.911 kcal (2) G-P(sol) polarization free energy of solvation -29.886 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -41.798 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.443 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.329 kcal (6) G-S(sol) free energy of system = (1) + (5) -50.240 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds