Wall clock time and date at job start Mon Mar 30 2020 07:24:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 C 1.52999 * 109.46626 * 2 1 4 4 C 1.52997 * 109.47127 * 240.00461 * 2 1 3 5 5 O 1.42898 * 109.47175 * 184.99790 * 4 2 1 6 6 C 1.42905 * 113.99973 * 179.97438 * 5 4 2 7 7 H 1.08994 * 112.85242 * 338.31088 * 6 5 4 8 8 C 1.53779 * 113.61182 * 109.50885 * 6 5 4 9 9 C 1.53777 * 87.08198 * 139.97937 * 8 6 5 10 10 H 1.08996 * 113.61549 * 89.11590 * 9 8 6 11 11 N 1.46896 * 113.61457 * 219.93074 * 9 8 6 12 12 C 1.46906 * 111.00453 * 255.49506 * 11 9 8 13 13 C 1.50696 * 109.47452 * 179.97438 * 12 11 9 14 14 H 1.08002 * 120.00028 * 0.02562 * 13 12 11 15 15 C 1.37872 * 119.99911 * 179.97438 * 13 12 11 16 16 N 1.31512 * 120.00475 * 0.02562 * 15 13 12 17 17 Si 1.86810 * 119.99966 * 180.02562 * 15 13 12 18 18 H 1.48503 * 109.46990 * 90.00094 * 17 15 13 19 19 H 1.48492 * 109.47148 * 210.00432 * 17 15 13 20 20 H 1.48506 * 109.46859 * 330.00295 * 17 15 13 21 21 C 1.53781 * 113.61194 * 207.00276 * 6 5 4 22 22 C 1.52998 * 113.61623 * 334.56541 * 21 6 5 23 23 C 1.52996 * 113.61744 * 105.47432 * 21 6 5 24 24 H 1.09001 * 109.46801 * 59.99811 * 1 2 3 25 25 H 1.09001 * 109.46998 * 179.97438 * 1 2 3 26 26 H 1.09000 * 109.47050 * 299.99699 * 1 2 3 27 27 H 1.08993 * 109.46955 * 120.00472 * 2 1 3 28 28 H 1.09000 * 109.47160 * 60.00369 * 3 2 1 29 29 H 1.09002 * 109.46719 * 180.02562 * 3 2 1 30 30 H 1.08993 * 109.47839 * 299.99931 * 3 2 1 31 31 H 1.09002 * 109.47196 * 304.99671 * 4 2 1 32 32 H 1.09001 * 109.47630 * 64.99767 * 4 2 1 33 33 H 1.09002 * 113.61222 * 254.52601 * 8 6 5 34 34 H 1.09003 * 113.61662 * 25.42408 * 8 6 5 35 35 H 1.00900 * 111.00206 * 131.54144 * 11 9 8 36 36 H 1.08999 * 109.46504 * 300.00110 * 12 11 9 37 37 H 1.09003 * 109.46649 * 60.00013 * 12 11 9 38 38 H 0.96996 * 120.00107 * 179.97438 * 16 15 13 39 39 H 1.08999 * 109.47080 * 79.50450 * 22 21 6 40 40 H 1.08998 * 109.47654 * 199.50687 * 22 21 6 41 41 H 1.08998 * 109.47536 * 319.50940 * 22 21 6 42 42 H 1.08998 * 109.47087 * 40.48797 * 23 21 6 43 43 H 1.08992 * 109.47574 * 160.49517 * 23 21 6 44 44 H 1.09001 * 109.46779 * 280.49657 * 23 21 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 6 2.0401 -0.7211 -1.2493 5 8 3.4642 -0.8236 -1.1921 6 6 4.0450 -1.4854 -2.3177 7 1 3.3372 -2.1261 -2.8436 8 6 4.8326 -0.5457 -3.2458 9 6 5.8709 -1.6725 -3.3759 10 1 5.6633 -2.3654 -4.1913 11 7 7.2603 -1.1958 -3.3723 12 6 7.8322 -1.2299 -4.7251 13 6 9.2547 -0.7344 -4.6818 14 1 9.6906 -0.4254 -3.7431 15 6 10.0001 -0.6765 -5.8402 16 7 9.4696 -1.0532 -6.9831 17 14 11.7637 -0.0628 -5.7864 18 1 12.6792 -1.2078 -5.5492 19 1 12.1030 0.5824 -7.0800 20 1 11.9109 0.9246 -4.6870 21 6 5.3852 -2.1715 -2.0048 22 6 6.1330 -1.5467 -0.8253 23 6 5.2857 -3.6951 -1.9071 24 1 -0.3633 0.5139 -0.8900 25 1 -0.3633 -1.0277 -0.0005 26 1 -0.3633 0.5138 0.8900 27 1 1.8933 -0.5139 0.8899 28 1 1.6766 1.9563 0.8900 29 1 3.1300 1.4425 -0.0005 30 1 1.6767 1.9564 -0.8899 31 1 1.6055 -1.7197 -1.2953 32 1 1.7517 -0.1582 -2.1370 33 1 4.3155 -0.3186 -4.1781 34 1 5.2141 0.3440 -2.7447 35 1 7.8241 -1.7295 -2.7279 36 1 7.8147 -2.2528 -5.1011 37 1 7.2450 -0.5903 -5.3840 38 1 9.9939 -1.0121 -7.7981 39 1 5.7016 -1.9050 0.1093 40 1 7.1849 -1.8285 -0.8715 41 1 6.0452 -0.4613 -0.8732 42 1 4.6233 -4.0668 -2.6889 43 1 6.2762 -4.1327 -2.0317 44 1 4.8867 -3.9713 -0.9311 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000082923062.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:24:16 Heat of formation + Delta-G solvation = -68.047547 kcal Electronic energy + Delta-G solvation = -19622.476671 eV Core-core repulsion = 16766.881463 eV Total energy + Delta-G solvation = -2855.595208 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 255.194 amu Computer time = 0.48 seconds Orbital eigenvalues (eV) -41.20482 -38.40157 -36.12626 -35.24608 -33.71931 -31.38386 -28.68611 -28.29469 -27.97932 -26.93098 -24.59841 -23.52613 -22.82989 -21.16451 -19.47164 -18.37373 -17.76800 -16.87607 -16.66075 -16.21460 -15.90064 -15.84833 -14.91076 -14.81993 -14.47124 -14.28883 -14.04689 -13.74107 -13.48493 -13.23791 -13.05750 -12.97349 -12.94933 -12.74618 -12.68948 -12.53230 -12.43393 -12.09950 -12.02262 -11.77054 -11.73196 -11.50310 -11.40712 -11.15702 -10.92263 -10.66487 -10.19381 -9.07681 -8.22798 -6.34028 1.40341 1.42301 1.54186 2.39579 2.74016 3.10366 3.47154 3.54565 3.73172 3.93273 3.96860 4.01798 4.07092 4.28587 4.34313 4.38477 4.56369 4.59199 4.67645 4.78168 4.81095 4.83868 4.84968 4.97224 5.01036 5.03399 5.05925 5.08779 5.14409 5.16076 5.24362 5.25401 5.27373 5.44390 5.47013 5.51563 5.58714 5.65586 6.04569 6.43188 6.49396 6.75426 6.90458 7.37176 8.88870 Molecular weight = 255.19amu Principal moments of inertia in cm(-1) A = 0.034459 B = 0.003854 C = 0.003737 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 812.371923 B = 7263.704900 C = 7490.429633 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C -0.093 4.093 3 C -0.143 4.143 4 C 0.058 3.942 5 O -0.376 6.376 6 C 0.087 3.913 7 H 0.098 0.902 8 C -0.142 4.142 9 C 0.057 3.943 10 H 0.052 0.948 11 N -0.668 5.668 12 C 0.211 3.789 13 C -0.535 4.535 14 H 0.064 0.936 15 C 0.001 3.999 16 N -0.935 5.935 17 Si 0.973 3.027 18 H -0.270 1.270 19 H -0.282 1.282 20 H -0.265 1.265 21 C -0.076 4.076 22 C -0.101 4.101 23 C -0.134 4.134 24 H 0.057 0.943 25 H 0.062 0.938 26 H 0.069 0.931 27 H 0.073 0.927 28 H 0.063 0.937 29 H 0.044 0.956 30 H 0.051 0.949 31 H 0.057 0.943 32 H 0.045 0.955 33 H 0.057 0.943 34 H 0.078 0.922 35 H 0.334 0.666 36 H -0.041 1.041 37 H -0.004 1.004 38 H 0.265 0.735 39 H 0.066 0.934 40 H 0.051 0.949 41 H 0.048 0.952 42 H 0.060 0.940 43 H 0.052 0.948 44 H 0.073 0.927 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.891 -1.604 14.079 22.048 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C -0.111 4.111 3 C -0.201 4.201 4 C -0.019 4.019 5 O -0.295 6.295 6 C 0.029 3.971 7 H 0.116 0.884 8 C -0.181 4.181 9 C -0.054 4.054 10 H 0.070 0.930 11 N -0.299 5.299 12 C 0.083 3.917 13 C -0.573 4.573 14 H 0.082 0.918 15 C -0.197 4.197 16 N -0.575 5.575 17 Si 0.797 3.203 18 H -0.196 1.196 19 H -0.207 1.207 20 H -0.189 1.189 21 C -0.076 4.076 22 C -0.158 4.158 23 C -0.191 4.191 24 H 0.076 0.924 25 H 0.082 0.918 26 H 0.088 0.912 27 H 0.092 0.908 28 H 0.082 0.918 29 H 0.063 0.937 30 H 0.070 0.930 31 H 0.076 0.924 32 H 0.064 0.936 33 H 0.076 0.924 34 H 0.097 0.903 35 H 0.153 0.847 36 H -0.023 1.023 37 H 0.014 0.986 38 H 0.074 0.926 39 H 0.085 0.915 40 H 0.070 0.930 41 H 0.067 0.933 42 H 0.079 0.921 43 H 0.071 0.929 44 H 0.092 0.908 Dipole moment (debyes) X Y Z Total from point charges -16.924 -0.880 14.013 21.991 hybrid contribution 0.974 -0.670 -1.099 1.615 sum -15.950 -1.550 12.914 20.581 Atomic orbital electron populations 1.21761 0.92897 1.02536 1.02683 1.21099 0.96534 0.96327 0.97170 1.21765 1.00836 0.95678 1.01784 1.22786 0.80859 0.99714 0.98522 1.87931 1.20620 1.78313 1.42635 1.23525 0.92976 0.93539 0.87073 0.88398 1.23505 0.96850 0.98542 0.99207 1.22882 0.89728 0.96137 0.96678 0.93000 1.60661 1.01798 1.58045 1.09430 1.19202 0.93897 0.92509 0.86070 1.21554 0.97933 1.43290 0.94570 0.91817 1.25960 1.03483 0.95455 0.94825 1.70092 1.38927 1.49061 0.99409 0.85328 0.78613 0.78680 0.77647 1.19564 1.20704 1.18927 1.22323 0.94711 0.95968 0.94624 1.21152 0.98683 1.00247 0.95744 1.21742 1.01887 0.92844 1.02638 0.92358 0.91850 0.91234 0.90815 0.91774 0.93726 0.93006 0.92433 0.93626 0.92398 0.90335 0.84671 1.02304 0.98630 0.92628 0.91544 0.93043 0.93317 0.92080 0.92915 0.90806 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.77 9.19 71.98 0.66 -1.11 16 2 C -0.09 -1.59 3.16 -10.79 -0.03 -1.62 16 3 C -0.14 -2.66 9.09 71.98 0.65 -2.01 16 4 C 0.06 1.15 5.17 71.98 0.37 1.52 16 5 O -0.38 -9.74 9.04 -148.98 -1.35 -11.09 16 6 C 0.09 2.35 3.71 31.12 0.12 2.47 16 7 H 0.10 2.28 7.76 -2.39 -0.02 2.26 16 8 C -0.14 -4.79 7.36 31.12 0.23 -4.56 16 9 C 0.06 2.08 3.56 45.44 0.16 2.24 16 10 H 0.05 2.02 7.85 -2.39 -0.02 2.00 16 11 N -0.67 -29.79 6.00 -492.86 -2.96 -32.75 16 12 C 0.21 11.68 5.30 85.55 0.45 12.14 16 13 C -0.54 -31.31 9.32 25.60 0.24 -31.07 16 14 H 0.06 3.62 7.81 -2.91 -0.02 3.60 16 15 C 0.00 0.05 5.46 84.65 0.46 0.51 16 16 N -0.93 -57.49 13.29 21.45 0.28 -57.20 16 17 Si 0.97 45.05 29.54 68.60 2.03 47.07 16 18 H -0.27 -11.98 7.11 99.48 0.71 -11.27 16 19 H -0.28 -12.71 7.11 99.48 0.71 -12.00 16 20 H -0.26 -11.85 7.11 99.48 0.71 -11.14 16 21 C -0.08 -2.18 1.26 -51.66 -0.07 -2.24 16 22 C -0.10 -2.92 7.74 71.98 0.56 -2.36 16 23 C -0.13 -3.24 9.17 71.98 0.66 -2.58 16 24 H 0.06 0.71 8.14 -2.39 -0.02 0.69 16 25 H 0.06 0.70 8.14 -2.39 -0.02 0.68 16 26 H 0.07 0.75 8.14 -2.39 -0.02 0.73 16 27 H 0.07 1.31 8.14 -2.39 -0.02 1.29 16 28 H 0.06 1.00 8.14 -2.39 -0.02 0.98 16 29 H 0.04 1.01 7.82 -2.39 -0.02 0.99 16 30 H 0.05 0.95 8.14 -2.39 -0.02 0.93 16 31 H 0.06 0.99 8.14 -2.39 -0.02 0.97 16 32 H 0.05 0.91 8.14 -2.39 -0.02 0.89 16 33 H 0.06 1.91 8.14 -2.39 -0.02 1.89 16 34 H 0.08 2.91 7.63 -2.39 -0.02 2.89 16 35 H 0.33 14.23 7.16 -89.69 -0.64 13.59 16 36 H -0.04 -2.41 8.13 -2.39 -0.02 -2.43 16 37 H 0.00 -0.27 8.14 -2.39 -0.02 -0.29 16 38 H 0.26 15.24 8.31 -92.71 -0.77 14.47 16 39 H 0.07 1.68 8.14 -2.39 -0.02 1.66 16 40 H 0.05 1.52 6.93 -2.39 -0.02 1.50 16 41 H 0.05 1.57 7.25 -2.39 -0.02 1.55 16 42 H 0.06 1.37 8.01 -2.39 -0.02 1.35 16 43 H 0.05 1.34 8.14 -2.39 -0.02 1.32 16 44 H 0.07 1.52 8.14 -2.39 -0.02 1.50 16 Total: -1.00 -64.81 349.17 2.76 -62.05 By element: Atomic # 1 Polarization: 20.31 SS G_CDS: 0.29 Total: 20.59 kcal Atomic # 6 Polarization: -33.14 SS G_CDS: 4.47 Total: -28.68 kcal Atomic # 7 Polarization: -87.28 SS G_CDS: -2.67 Total: -89.95 kcal Atomic # 8 Polarization: -9.74 SS G_CDS: -1.35 Total: -11.09 kcal Atomic # 14 Polarization: 45.05 SS G_CDS: 2.03 Total: 47.07 kcal Total: -64.81 2.76 -62.05 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000082923062.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -5.996 kcal (2) G-P(sol) polarization free energy of solvation -64.813 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -70.809 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.761 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.051 kcal (6) G-S(sol) free energy of system = (1) + (5) -68.048 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.48 seconds