Wall clock time and date at job start Mon Mar 30 2020 06:29:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 C 1.53002 * 109.47538 * 2 1 4 4 C 1.53007 * 109.46839 * 120.00061 * 2 1 3 5 5 C 1.53000 * 109.47191 * 174.99972 * 4 2 1 6 6 O 1.42896 * 109.47341 * 179.97438 * 5 4 2 7 7 C 1.42901 * 114.00084 * 179.97438 * 6 5 4 8 8 H 1.08996 * 110.90362 * 327.58963 * 7 6 5 9 9 C 1.55139 * 110.99011 * 91.46023 * 7 6 5 10 10 C 1.54316 * 103.17802 * 153.83263 * 9 7 6 11 11 N 1.47438 * 107.23185 * 337.62346 * 10 9 7 12 12 C 1.46899 * 111.00256 * 236.74212 * 11 10 9 13 13 C 1.53001 * 109.47413 * 174.90225 * 12 11 10 14 14 C 1.50692 * 109.47492 * 174.70496 * 13 12 11 15 15 H 1.08005 * 119.99881 * 0.02562 * 14 13 12 16 16 C 1.37880 * 120.00418 * 180.02562 * 14 13 12 17 17 N 1.31513 * 119.99555 * 359.97438 * 16 14 13 18 18 Si 1.86799 * 120.00187 * 180.02562 * 16 14 13 19 19 H 1.48500 * 109.47043 * 359.97438 * 18 16 14 20 20 H 1.48492 * 109.47274 * 119.99778 * 18 16 14 21 21 H 1.48506 * 109.46641 * 239.99751 * 18 16 14 22 22 C 1.47845 * 108.56882 * 359.01535 * 11 10 9 23 23 H 1.09001 * 109.46990 * 300.00776 * 1 2 3 24 24 H 1.09001 * 109.46994 * 59.99932 * 1 2 3 25 25 H 1.08994 * 109.47455 * 180.02562 * 1 2 3 26 26 H 1.08999 * 109.47498 * 239.99257 * 2 1 3 27 27 H 1.09001 * 109.47076 * 179.97438 * 3 2 1 28 28 H 1.08994 * 109.46723 * 299.99887 * 3 2 1 29 29 H 1.08999 * 109.47210 * 59.99933 * 3 2 1 30 30 H 1.08996 * 109.47481 * 54.99880 * 4 2 1 31 31 H 1.09003 * 109.47156 * 294.99632 * 4 2 1 32 32 H 1.09003 * 109.47306 * 59.99881 * 5 4 2 33 33 H 1.09000 * 109.47289 * 299.99923 * 5 4 2 34 34 H 1.09004 * 110.70874 * 35.35567 * 9 7 6 35 35 H 1.09003 * 110.70061 * 272.30205 * 9 7 6 36 36 H 1.08999 * 109.88739 * 97.03330 * 10 9 7 37 37 H 1.08999 * 109.88648 * 218.06155 * 10 9 7 38 38 H 1.08998 * 109.47255 * 294.90318 * 12 11 10 39 39 H 1.08998 * 109.47023 * 54.90677 * 12 11 10 40 40 H 1.09001 * 109.47093 * 294.70600 * 13 12 11 41 41 H 1.09002 * 109.46606 * 54.70340 * 13 12 11 42 42 H 0.97001 * 119.99723 * 180.02562 * 17 16 14 43 43 H 1.09002 * 110.37817 * 142.92731 * 22 11 10 44 44 H 1.09008 * 110.37257 * 265.26075 * 22 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 6 2.0399 -0.7213 1.2493 5 6 3.5647 -0.8312 1.1881 6 8 4.0411 -1.5043 2.3551 7 6 5.4609 -1.6605 2.3972 8 1 5.8688 -1.7806 1.3936 9 6 6.1298 -0.4680 3.1301 10 6 7.4407 -1.0773 3.6699 11 7 7.2434 -2.5362 3.7508 12 6 7.4836 -3.0251 5.1151 13 6 7.1472 -4.5158 5.1893 14 6 7.5156 -5.0468 6.5506 15 1 7.9462 -4.3869 7.2893 16 6 7.3030 -6.3750 6.8534 17 7 6.7781 -7.1784 5.9541 18 14 7.7590 -7.0330 8.5411 19 1 8.3271 -5.9348 9.3636 20 1 6.5463 -7.5735 9.2060 21 1 8.7669 -8.1139 8.3951 22 6 5.8677 -2.8504 3.3099 23 1 -0.3633 0.5140 0.8899 24 1 -0.3633 0.5139 -0.8900 25 1 -0.3634 -1.0276 0.0005 26 1 1.8933 -0.5139 -0.8899 27 1 3.1301 1.4424 0.0005 28 1 1.6768 1.9562 -0.8900 29 1 1.6768 1.9563 0.8900 30 1 1.6053 -1.7198 1.2953 31 1 1.7516 -0.1583 2.1370 32 1 3.9994 0.1674 1.1422 33 1 3.8531 -1.3941 0.3004 34 1 5.5016 -0.1176 3.9492 35 1 6.3401 0.3435 2.4333 36 1 8.2622 -0.8513 2.9900 37 1 7.6570 -0.6745 4.6594 38 1 8.5314 -2.8757 5.3754 39 1 6.8535 -2.4753 5.8142 40 1 6.0794 -4.6561 5.0214 41 1 7.7089 -5.0534 4.4254 42 1 6.6282 -8.1128 6.1672 43 1 5.8536 -3.7830 2.7457 44 1 5.1995 -2.9154 4.1686 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000083247760.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:29:21 Heat of formation + Delta-G solvation = -71.279521 kcal Electronic energy + Delta-G solvation = -19049.270881 eV Core-core repulsion = 16193.535525 eV Total energy + Delta-G solvation = -2855.735357 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 255.194 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -39.18824 -37.56957 -36.02724 -33.38639 -31.47314 -29.77454 -28.19651 -27.85562 -27.44782 -24.25366 -23.26884 -21.62233 -20.82171 -20.16925 -19.60172 -16.90747 -16.46812 -15.87782 -15.55345 -14.90110 -14.55464 -14.42985 -14.25114 -13.73985 -13.64344 -13.12962 -12.92052 -12.64826 -12.40312 -12.30515 -12.07685 -11.81969 -11.54549 -11.31788 -11.19128 -11.02383 -10.97835 -10.87700 -10.80690 -10.73355 -10.48017 -10.33619 -9.93667 -9.40321 -9.31024 -9.08014 -8.32956 -7.72092 -5.96954 -3.99199 3.33349 3.40475 3.44642 3.54830 4.44634 4.58273 4.62959 4.63142 4.72357 4.85983 5.00272 5.04592 5.20525 5.27503 5.28201 5.36854 5.38774 5.39524 5.43907 5.54857 5.61801 5.70816 5.77010 5.82153 5.90400 5.93750 5.97292 6.08521 6.11829 6.16164 6.25950 6.30776 6.45858 6.52031 6.95773 7.30794 7.49618 7.55757 7.77750 7.91066 8.09467 8.45828 9.07863 9.64294 11.14561 Molecular weight = 255.19amu Principal moments of inertia in cm(-1) A = 0.030553 B = 0.003392 C = 0.003147 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 916.219227 B = 8253.005482 C = 8896.044806 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.095 4.095 3 C -0.151 4.151 4 C -0.115 4.115 5 C 0.061 3.939 6 O -0.376 6.376 7 C 0.078 3.922 8 H 0.073 0.927 9 C -0.163 4.163 10 C 0.042 3.958 11 N -0.528 5.528 12 C 0.058 3.942 13 C 0.023 3.977 14 C -0.520 4.520 15 H 0.055 0.945 16 C 0.057 3.943 17 N -0.893 5.893 18 Si 0.892 3.108 19 H -0.273 1.273 20 H -0.284 1.284 21 H -0.284 1.284 22 C 0.056 3.944 23 H 0.055 0.945 24 H 0.054 0.946 25 H 0.056 0.944 26 H 0.071 0.929 27 H 0.056 0.944 28 H 0.053 0.947 29 H 0.055 0.945 30 H 0.072 0.928 31 H 0.070 0.930 32 H 0.047 0.953 33 H 0.046 0.954 34 H 0.073 0.927 35 H 0.067 0.933 36 H 0.071 0.929 37 H 0.054 0.946 38 H 0.064 0.936 39 H 0.021 0.979 40 H 0.017 0.983 41 H 0.025 0.975 42 H 0.260 0.740 43 H 0.085 0.915 44 H 0.060 0.940 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.472 16.378 -12.379 22.209 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.113 4.113 3 C -0.209 4.209 4 C -0.153 4.153 5 C -0.015 4.015 6 O -0.294 6.294 7 C 0.019 3.981 8 H 0.091 0.909 9 C -0.202 4.202 10 C -0.086 4.086 11 N -0.253 5.253 12 C -0.069 4.069 13 C -0.014 4.014 14 C -0.559 4.559 15 H 0.073 0.927 16 C -0.144 4.144 17 N -0.532 5.532 18 Si 0.720 3.280 19 H -0.198 1.198 20 H -0.210 1.210 21 H -0.210 1.210 22 C -0.072 4.072 23 H 0.074 0.926 24 H 0.073 0.927 25 H 0.075 0.925 26 H 0.089 0.911 27 H 0.075 0.925 28 H 0.072 0.928 29 H 0.075 0.925 30 H 0.090 0.910 31 H 0.089 0.911 32 H 0.066 0.934 33 H 0.065 0.935 34 H 0.092 0.908 35 H 0.086 0.914 36 H 0.090 0.910 37 H 0.073 0.927 38 H 0.083 0.917 39 H 0.039 0.961 40 H 0.036 0.964 41 H 0.044 0.956 42 H 0.069 0.931 43 H 0.104 0.896 44 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges -8.287 15.885 -12.567 21.884 hybrid contribution -0.136 0.077 1.286 1.296 sum -8.422 15.962 -11.281 21.283 Atomic orbital electron populations 1.21823 0.94865 1.01948 1.01757 1.21054 0.96002 0.96281 0.97999 1.21927 1.01184 0.95960 1.01784 1.21589 0.93806 1.01603 0.98260 1.22572 0.94954 0.95969 0.88048 1.87901 1.21237 1.78260 1.42031 1.23402 0.80295 0.95373 0.99041 0.90893 1.23247 0.97874 0.98337 1.00743 1.22734 0.96528 0.88925 1.00428 1.63741 1.23966 1.10966 1.26669 1.22542 0.99863 0.99526 0.84927 1.19160 0.97072 0.88059 0.97134 1.21218 1.41401 0.94542 0.98778 0.92720 1.25001 0.95285 0.97058 0.97035 1.69984 1.44241 1.05124 1.33865 0.86534 0.78114 0.78928 0.84408 1.19781 1.21042 1.20987 1.22989 0.89441 0.96657 0.98109 0.92584 0.92678 0.92498 0.91089 0.92499 0.92750 0.92544 0.90956 0.91138 0.93447 0.93535 0.90822 0.91411 0.91031 0.92734 0.91722 0.96116 0.96422 0.95619 0.93064 0.89632 0.92208 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.03 9.19 37.15 0.34 -0.69 16 2 C -0.09 -0.74 2.92 -90.62 -0.26 -1.00 16 3 C -0.15 -1.09 8.95 37.16 0.33 -0.75 16 4 C -0.12 -1.13 5.05 -26.73 -0.14 -1.27 16 5 C 0.06 0.68 5.57 37.16 0.21 0.89 16 6 O -0.38 -5.60 10.16 -35.23 -0.36 -5.95 16 7 C 0.08 1.15 3.51 -24.34 -0.09 1.07 16 8 H 0.07 1.00 7.90 -51.93 -0.41 0.59 16 9 C -0.16 -2.22 6.66 -24.91 -0.17 -2.39 16 10 C 0.04 0.64 6.89 -2.84 -0.02 0.62 16 11 N -0.53 -10.08 5.28 -230.94 -1.22 -11.30 16 12 C 0.06 1.28 4.58 -3.82 -0.02 1.26 16 13 C 0.02 0.62 4.63 -27.89 -0.13 0.49 16 14 C -0.52 -15.06 9.11 -34.44 -0.31 -15.37 16 15 H 0.05 1.54 7.74 -52.48 -0.41 1.13 16 16 C 0.06 1.68 5.46 -17.82 -0.10 1.58 16 17 N -0.89 -27.27 13.29 55.43 0.74 -26.54 16 18 Si 0.89 21.98 29.54 -169.99 -5.02 16.96 16 19 H -0.27 -6.58 7.11 56.52 0.40 -6.17 16 20 H -0.28 -6.92 7.11 56.52 0.40 -6.52 16 21 H -0.28 -6.90 7.11 56.52 0.40 -6.50 16 22 C 0.06 1.03 5.18 -2.04 -0.01 1.02 16 23 H 0.06 0.39 8.14 -51.93 -0.42 -0.03 16 24 H 0.05 0.34 8.14 -51.93 -0.42 -0.08 16 25 H 0.06 0.40 8.14 -51.93 -0.42 -0.02 16 26 H 0.07 0.54 8.14 -51.93 -0.42 0.12 16 27 H 0.06 0.41 6.56 -51.93 -0.34 0.07 16 28 H 0.05 0.34 8.14 -51.93 -0.42 -0.08 16 29 H 0.06 0.41 8.14 -51.93 -0.42 -0.02 16 30 H 0.07 0.75 8.14 -51.93 -0.42 0.33 16 31 H 0.07 0.72 8.14 -51.93 -0.42 0.30 16 32 H 0.05 0.48 6.56 -51.93 -0.34 0.14 16 33 H 0.05 0.49 8.11 -51.93 -0.42 0.07 16 34 H 0.07 1.04 8.14 -51.93 -0.42 0.62 16 35 H 0.07 0.76 8.14 -51.93 -0.42 0.34 16 36 H 0.07 1.00 8.14 -51.93 -0.42 0.57 16 37 H 0.05 0.82 7.57 -51.93 -0.39 0.43 16 38 H 0.06 1.40 8.14 -51.93 -0.42 0.98 16 39 H 0.02 0.45 8.10 -51.93 -0.42 0.03 16 40 H 0.02 0.49 6.94 -51.93 -0.36 0.13 16 41 H 0.03 0.74 8.14 -51.93 -0.42 0.31 16 42 H 0.26 7.45 8.31 -40.82 -0.34 7.11 16 43 H 0.09 1.65 8.14 -51.93 -0.42 1.22 16 44 H 0.06 1.22 7.31 -51.92 -0.38 0.84 16 LS Contribution 346.37 15.07 5.22 5.22 Total: -1.00 -30.73 346.37 -9.53 -40.25 By element: Atomic # 1 Polarization: 4.43 SS G_CDS: -8.53 Total: -4.10 kcal Atomic # 6 Polarization: -14.18 SS G_CDS: -0.36 Total: -14.54 kcal Atomic # 7 Polarization: -37.36 SS G_CDS: -0.48 Total: -37.84 kcal Atomic # 8 Polarization: -5.60 SS G_CDS: -0.36 Total: -5.95 kcal Atomic # 14 Polarization: 21.98 SS G_CDS: -5.02 Total: 16.96 kcal Total LS contribution 5.22 Total: 5.22 kcal Total: -30.73 -9.53 -40.25 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000083247760.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -31.025 kcal (2) G-P(sol) polarization free energy of solvation -30.728 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -61.754 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.526 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.254 kcal (6) G-S(sol) free energy of system = (1) + (5) -71.280 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds