Wall clock time and date at job start Mon Mar 30 2020 06:29:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 C 1.53002 * 109.47538 * 2 1 4 4 C 1.53007 * 109.46839 * 120.00061 * 2 1 3 5 5 C 1.53000 * 109.47191 * 174.99972 * 4 2 1 6 6 O 1.42896 * 109.47341 * 179.97438 * 5 4 2 7 7 C 1.42901 * 114.00084 * 179.97438 * 6 5 4 8 8 H 1.08996 * 110.90362 * 327.58963 * 7 6 5 9 9 C 1.55139 * 110.99011 * 91.46023 * 7 6 5 10 10 C 1.54316 * 103.17802 * 153.83263 * 9 7 6 11 11 N 1.47438 * 107.23185 * 337.62346 * 10 9 7 12 12 C 1.46899 * 111.00256 * 236.74212 * 11 10 9 13 13 C 1.53001 * 109.47413 * 174.90225 * 12 11 10 14 14 C 1.50692 * 109.47492 * 174.70496 * 13 12 11 15 15 H 1.08005 * 119.99881 * 0.02562 * 14 13 12 16 16 C 1.37880 * 120.00418 * 180.02562 * 14 13 12 17 17 N 1.31513 * 119.99555 * 359.97438 * 16 14 13 18 18 Si 1.86799 * 120.00187 * 180.02562 * 16 14 13 19 19 H 1.48500 * 109.47043 * 359.97438 * 18 16 14 20 20 H 1.48492 * 109.47274 * 119.99778 * 18 16 14 21 21 H 1.48506 * 109.46641 * 239.99751 * 18 16 14 22 22 C 1.47845 * 108.56882 * 359.01535 * 11 10 9 23 23 H 1.09001 * 109.46990 * 300.00776 * 1 2 3 24 24 H 1.09001 * 109.46994 * 59.99932 * 1 2 3 25 25 H 1.08994 * 109.47455 * 180.02562 * 1 2 3 26 26 H 1.08999 * 109.47498 * 239.99257 * 2 1 3 27 27 H 1.09001 * 109.47076 * 179.97438 * 3 2 1 28 28 H 1.08994 * 109.46723 * 299.99887 * 3 2 1 29 29 H 1.08999 * 109.47210 * 59.99933 * 3 2 1 30 30 H 1.08996 * 109.47481 * 54.99880 * 4 2 1 31 31 H 1.09003 * 109.47156 * 294.99632 * 4 2 1 32 32 H 1.09003 * 109.47306 * 59.99881 * 5 4 2 33 33 H 1.09000 * 109.47289 * 299.99923 * 5 4 2 34 34 H 1.09004 * 110.70874 * 35.35567 * 9 7 6 35 35 H 1.09003 * 110.70061 * 272.30205 * 9 7 6 36 36 H 1.08999 * 109.88739 * 97.03330 * 10 9 7 37 37 H 1.08999 * 109.88648 * 218.06155 * 10 9 7 38 38 H 1.08998 * 109.47255 * 294.90318 * 12 11 10 39 39 H 1.08998 * 109.47023 * 54.90677 * 12 11 10 40 40 H 1.09001 * 109.47093 * 294.70600 * 13 12 11 41 41 H 1.09002 * 109.46606 * 54.70340 * 13 12 11 42 42 H 0.97001 * 119.99723 * 180.02562 * 17 16 14 43 43 H 1.09002 * 110.37817 * 142.92731 * 22 11 10 44 44 H 1.09008 * 110.37257 * 265.26075 * 22 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 6 2.0399 -0.7213 1.2493 5 6 3.5647 -0.8312 1.1881 6 8 4.0411 -1.5043 2.3551 7 6 5.4609 -1.6605 2.3972 8 1 5.8688 -1.7806 1.3936 9 6 6.1298 -0.4680 3.1301 10 6 7.4407 -1.0773 3.6699 11 7 7.2434 -2.5362 3.7508 12 6 7.4836 -3.0251 5.1151 13 6 7.1472 -4.5158 5.1893 14 6 7.5156 -5.0468 6.5506 15 1 7.9462 -4.3869 7.2893 16 6 7.3030 -6.3750 6.8534 17 7 6.7781 -7.1784 5.9541 18 14 7.7590 -7.0330 8.5411 19 1 8.3271 -5.9348 9.3636 20 1 6.5463 -7.5735 9.2060 21 1 8.7669 -8.1139 8.3951 22 6 5.8677 -2.8504 3.3099 23 1 -0.3633 0.5140 0.8899 24 1 -0.3633 0.5139 -0.8900 25 1 -0.3634 -1.0276 0.0005 26 1 1.8933 -0.5139 -0.8899 27 1 3.1301 1.4424 0.0005 28 1 1.6768 1.9562 -0.8900 29 1 1.6768 1.9563 0.8900 30 1 1.6053 -1.7198 1.2953 31 1 1.7516 -0.1583 2.1370 32 1 3.9994 0.1674 1.1422 33 1 3.8531 -1.3941 0.3004 34 1 5.5016 -0.1176 3.9492 35 1 6.3401 0.3435 2.4333 36 1 8.2622 -0.8513 2.9900 37 1 7.6570 -0.6745 4.6594 38 1 8.5314 -2.8757 5.3754 39 1 6.8535 -2.4753 5.8142 40 1 6.0794 -4.6561 5.0214 41 1 7.7089 -5.0534 4.4254 42 1 6.6282 -8.1128 6.1672 43 1 5.8536 -3.7830 2.7457 44 1 5.1995 -2.9154 4.1686 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000083247760.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:29:20 Heat of formation + Delta-G solvation = -90.265035 kcal Electronic energy + Delta-G solvation = -19050.094155 eV Core-core repulsion = 16193.535525 eV Total energy + Delta-G solvation = -2856.558630 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 255.194 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -40.45764 -38.63417 -36.95790 -35.42140 -33.21095 -30.79271 -29.87361 -29.12826 -28.01390 -26.22646 -24.09657 -23.30387 -22.03124 -21.35145 -20.78875 -18.60670 -18.00446 -16.99633 -16.70509 -16.51253 -16.08597 -15.49408 -15.42213 -14.87944 -14.62649 -14.53854 -14.43520 -13.97519 -13.60668 -13.36059 -13.19786 -13.01025 -12.95430 -12.72056 -12.55381 -12.44755 -12.34301 -12.11420 -11.89818 -11.73086 -11.59969 -11.51524 -11.48040 -11.33106 -11.21514 -10.58690 -10.45574 -9.27193 -8.21492 -6.33332 1.39356 1.40191 1.53611 2.38598 2.46835 3.11742 3.24157 3.64989 3.65859 3.91867 3.97459 4.03432 4.08021 4.24031 4.29404 4.42983 4.46296 4.50193 4.52658 4.60702 4.72407 4.77809 4.79755 4.82446 4.87909 4.93022 4.99840 5.00579 5.03532 5.08646 5.12206 5.19279 5.31289 5.42868 5.45191 5.49572 5.59739 5.76490 5.98621 6.13764 6.28060 6.32261 6.83395 7.35856 8.91057 Molecular weight = 255.19amu Principal moments of inertia in cm(-1) A = 0.030553 B = 0.003392 C = 0.003147 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 916.219227 B = 8253.005482 C = 8896.044806 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.091 4.091 3 C -0.150 4.150 4 C -0.113 4.113 5 C 0.057 3.943 6 O -0.400 6.400 7 C 0.088 3.912 8 H 0.090 0.910 9 C -0.152 4.152 10 C 0.039 3.961 11 N -0.538 5.538 12 C 0.075 3.925 13 C 0.033 3.967 14 C -0.545 4.545 15 H 0.061 0.939 16 C -0.001 4.001 17 N -0.932 5.932 18 Si 0.969 3.031 19 H -0.261 1.261 20 H -0.278 1.278 21 H -0.276 1.276 22 C 0.053 3.947 23 H 0.054 0.946 24 H 0.066 0.934 25 H 0.052 0.948 26 H 0.075 0.925 27 H 0.057 0.943 28 H 0.064 0.936 29 H 0.054 0.946 30 H 0.060 0.940 31 H 0.063 0.937 32 H 0.064 0.936 33 H 0.054 0.946 34 H 0.067 0.933 35 H 0.103 0.897 36 H 0.094 0.906 37 H 0.058 0.942 38 H 0.070 0.930 39 H 0.020 0.980 40 H -0.010 1.010 41 H -0.006 1.006 42 H 0.264 0.736 43 H 0.064 0.936 44 H 0.031 0.969 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.070 18.202 -12.542 23.532 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.110 4.110 3 C -0.208 4.208 4 C -0.151 4.151 5 C -0.019 4.019 6 O -0.319 6.319 7 C 0.029 3.971 8 H 0.108 0.892 9 C -0.190 4.190 10 C -0.088 4.088 11 N -0.264 5.264 12 C -0.053 4.053 13 C -0.005 4.005 14 C -0.584 4.584 15 H 0.079 0.921 16 C -0.199 4.199 17 N -0.572 5.572 18 Si 0.793 3.207 19 H -0.185 1.185 20 H -0.204 1.204 21 H -0.202 1.202 22 C -0.075 4.075 23 H 0.073 0.927 24 H 0.085 0.915 25 H 0.072 0.928 26 H 0.094 0.906 27 H 0.076 0.924 28 H 0.083 0.917 29 H 0.073 0.927 30 H 0.078 0.922 31 H 0.082 0.918 32 H 0.083 0.917 33 H 0.072 0.928 34 H 0.085 0.915 35 H 0.121 0.879 36 H 0.112 0.888 37 H 0.077 0.923 38 H 0.088 0.912 39 H 0.038 0.962 40 H 0.009 0.991 41 H 0.013 0.987 42 H 0.073 0.927 43 H 0.083 0.917 44 H 0.049 0.951 Dipole moment (debyes) X Y Z Total from point charges -7.885 17.734 -12.743 23.217 hybrid contribution -0.304 -0.500 1.272 1.400 sum -8.189 17.234 -11.471 22.263 Atomic orbital electron populations 1.21826 0.94360 1.01929 1.02283 1.21039 0.96416 0.96593 0.96910 1.21922 1.01230 0.95343 1.02258 1.21598 0.93093 1.01168 0.99201 1.22800 0.95600 0.96551 0.86971 1.87877 1.21074 1.79039 1.43929 1.23247 0.80830 0.94013 0.99002 0.89183 1.23189 0.96342 0.98448 1.01016 1.22885 0.98296 0.86166 1.01498 1.63645 1.24243 1.14042 1.24450 1.22195 0.99915 0.96273 0.86893 1.18969 0.94720 0.91185 0.95589 1.21646 1.41706 0.95275 0.99728 0.92059 1.26010 0.94908 0.97347 1.01586 1.70123 1.45114 1.05629 1.36313 0.85338 0.78030 0.78426 0.78869 1.18474 1.20354 1.20165 1.22891 0.88927 0.97999 0.97720 0.92712 0.91502 0.92837 0.90638 0.92394 0.91654 0.92736 0.92164 0.91779 0.91741 0.92752 0.91468 0.87874 0.88801 0.92305 0.91206 0.96193 0.99141 0.98729 0.92717 0.91708 0.95070 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.88 9.19 71.98 0.66 -1.21 16 2 C -0.09 -1.28 2.92 -10.79 -0.03 -1.31 16 3 C -0.15 -1.83 8.95 71.98 0.64 -1.18 16 4 C -0.11 -2.13 5.05 30.60 0.15 -1.98 16 5 C 0.06 1.18 5.57 71.98 0.40 1.58 16 6 O -0.40 -11.70 10.16 -148.98 -1.51 -13.21 16 7 C 0.09 2.52 3.51 32.14 0.11 2.63 16 8 H 0.09 2.28 7.90 -2.39 -0.02 2.26 16 9 C -0.15 -3.74 6.66 31.77 0.21 -3.53 16 10 C 0.04 1.11 6.89 86.65 0.60 1.70 16 11 N -0.54 -20.64 5.28 -884.56 -4.67 -25.31 16 12 C 0.07 3.35 4.58 86.30 0.39 3.74 16 13 C 0.03 1.83 4.63 29.85 0.14 1.97 16 14 C -0.55 -32.16 9.11 25.60 0.23 -31.93 16 15 H 0.06 3.45 7.74 -2.91 -0.02 3.43 16 16 C 0.00 -0.04 5.46 84.66 0.46 0.43 16 17 N -0.93 -58.36 13.29 21.45 0.28 -58.07 16 18 Si 0.97 45.27 29.54 68.60 2.03 47.29 16 19 H -0.26 -11.57 7.11 99.48 0.71 -10.86 16 20 H -0.28 -12.63 7.11 99.48 0.71 -11.92 16 21 H -0.28 -12.49 7.11 99.48 0.71 -11.79 16 22 C 0.05 2.02 5.18 86.94 0.45 2.47 16 23 H 0.05 0.71 8.14 -2.39 -0.02 0.69 16 24 H 0.07 0.70 8.14 -2.39 -0.02 0.68 16 25 H 0.05 0.71 8.14 -2.39 -0.02 0.69 16 26 H 0.08 1.00 8.14 -2.39 -0.02 0.99 16 27 H 0.06 0.69 6.56 -2.39 -0.02 0.67 16 28 H 0.06 0.66 8.14 -2.39 -0.02 0.64 16 29 H 0.05 0.68 8.14 -2.39 -0.02 0.66 16 30 H 0.06 1.26 8.14 -2.39 -0.02 1.24 16 31 H 0.06 1.28 8.14 -2.39 -0.02 1.26 16 32 H 0.06 1.13 6.56 -2.39 -0.02 1.11 16 33 H 0.05 1.05 8.11 -2.39 -0.02 1.03 16 34 H 0.07 1.77 8.14 -2.38 -0.02 1.75 16 35 H 0.10 1.87 8.14 -2.39 -0.02 1.85 16 36 H 0.09 2.30 8.14 -2.39 -0.02 2.28 16 37 H 0.06 1.65 7.57 -2.39 -0.02 1.63 16 38 H 0.07 3.03 8.14 -2.39 -0.02 3.01 16 39 H 0.02 0.88 8.10 -2.39 -0.02 0.86 16 40 H -0.01 -0.59 6.94 -2.39 -0.02 -0.61 16 41 H -0.01 -0.35 8.14 -2.39 -0.02 -0.37 16 42 H 0.26 15.42 8.31 -92.71 -0.77 14.65 16 43 H 0.06 2.67 8.14 -2.39 -0.02 2.65 16 44 H 0.03 1.35 7.31 -2.38 -0.02 1.33 16 Total: -1.00 -67.57 346.37 1.47 -66.10 By element: Atomic # 1 Polarization: 8.90 SS G_CDS: 0.91 Total: 9.82 kcal Atomic # 6 Polarization: -31.05 SS G_CDS: 4.43 Total: -26.62 kcal Atomic # 7 Polarization: -78.99 SS G_CDS: -4.38 Total: -83.38 kcal Atomic # 8 Polarization: -11.70 SS G_CDS: -1.51 Total: -13.21 kcal Atomic # 14 Polarization: 45.27 SS G_CDS: 2.03 Total: 47.29 kcal Total: -67.57 1.47 -66.10 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000083247760.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -24.167 kcal (2) G-P(sol) polarization free energy of solvation -67.570 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -91.737 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.472 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.098 kcal (6) G-S(sol) free energy of system = (1) + (5) -90.265 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds