Wall clock time and date at job start Mon Mar 30 2020 07:00:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 C 1.53005 * 109.47241 * 2 1 4 4 C 1.53005 * 109.47299 * 119.99910 * 2 1 3 5 5 N 1.46900 * 109.47053 * 95.76820 * 4 2 1 6 6 C 1.46898 * 111.00017 * 70.12081 * 5 4 2 7 7 C 1.50694 * 109.47338 * 71.90414 * 6 5 4 8 8 H 1.08004 * 120.00065 * 5.09597 * 7 6 5 9 9 C 1.37878 * 120.00320 * 185.09316 * 7 6 5 10 10 N 1.31516 * 119.99583 * 359.97438 * 9 7 6 11 11 Si 1.86798 * 120.00044 * 180.02562 * 9 7 6 12 12 H 1.48499 * 109.47525 * 90.00036 * 11 9 7 13 13 H 1.48503 * 109.46720 * 210.00018 * 11 9 7 14 14 H 1.48495 * 109.47137 * 329.99619 * 11 9 7 15 15 C 1.46903 * 110.99944 * 306.16687 * 5 4 2 16 16 C 1.53000 * 109.46931 * 285.59892 * 15 5 4 17 17 O 1.42903 * 110.01717 * 64.79449 * 16 15 5 18 18 C 1.54273 * 110.03612 * 303.40137 * 16 15 5 19 19 C 1.54963 * 104.15924 * 217.13703 * 18 16 15 20 20 C 1.54884 * 102.77800 * 37.88606 * 19 18 16 21 21 C 1.53879 * 110.03138 * 186.18257 * 16 15 5 22 22 H 1.08997 * 109.47558 * 176.86513 * 1 2 3 23 23 H 1.08997 * 109.47313 * 296.86465 * 1 2 3 24 24 H 1.08999 * 109.46984 * 56.86528 * 1 2 3 25 25 H 1.09005 * 109.47202 * 239.99965 * 2 1 3 26 26 H 1.09000 * 109.46965 * 180.02562 * 3 2 1 27 27 H 1.09000 * 109.47088 * 299.99875 * 3 2 1 28 28 H 1.08996 * 109.47146 * 60.00097 * 3 2 1 29 29 H 1.08993 * 109.47229 * 215.77250 * 4 2 1 30 30 H 1.09002 * 109.46615 * 335.77085 * 4 2 1 31 31 H 1.08997 * 109.47258 * 191.91122 * 6 5 4 32 32 H 1.09001 * 109.46743 * 311.90348 * 6 5 4 33 33 H 0.97008 * 119.99450 * 179.97438 * 10 9 7 34 34 H 1.08994 * 109.47190 * 45.59995 * 15 5 4 35 35 H 1.09002 * 109.46742 * 165.60597 * 15 5 4 36 36 H 0.96700 * 113.99788 * 180.02562 * 17 16 15 37 37 H 1.09003 * 110.48040 * 335.78178 * 18 16 15 38 38 H 1.08999 * 110.48561 * 98.42385 * 18 16 15 39 39 H 1.08995 * 110.71859 * 279.56826 * 19 18 16 40 40 H 1.08999 * 110.76500 * 156.22064 * 19 18 16 41 41 H 1.09006 * 110.48513 * 203.40120 * 20 19 18 42 42 H 1.09002 * 110.48742 * 80.76402 * 20 19 18 43 43 H 1.09002 * 110.03146 * 238.56773 * 21 16 15 44 44 H 1.08996 * 110.03237 * 0.02562 * 21 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0400 -0.7212 1.2493 5 7 2.3345 -2.1222 0.9199 6 6 3.5179 -2.2223 0.0554 7 6 4.7542 -1.9078 0.8577 8 1 4.6790 -1.7395 1.9219 9 6 5.9813 -1.8351 0.2334 10 7 6.0730 -2.0407 -1.0624 11 14 7.5138 -1.4460 1.2281 12 1 8.1178 -2.7097 1.7215 13 1 8.4927 -0.7315 0.3700 14 1 7.1492 -0.5875 2.3836 15 6 1.1726 -2.7725 0.2992 16 6 0.1162 -3.0578 1.3686 17 8 -0.3816 -1.8301 1.9043 18 6 0.7241 -3.9182 2.4957 19 6 -0.4238 -4.8767 2.9018 20 6 -1.0923 -5.2055 1.5439 21 6 -1.0385 -3.8757 0.7638 22 1 -0.3634 -1.0261 -0.0562 23 1 -0.3634 0.4644 0.9167 24 1 -0.3633 0.5617 -0.8605 25 1 1.8933 -0.5139 -0.8900 26 1 3.1300 1.4425 -0.0005 27 1 1.6767 1.9564 -0.8900 28 1 1.6767 1.9564 0.8900 29 1 2.9472 -0.2333 1.6056 30 1 1.2775 -0.6834 2.0273 31 1 3.5916 -3.2336 -0.3442 32 1 3.4281 -1.5124 -0.7669 33 1 6.9363 -1.9891 -1.5017 34 1 0.7515 -2.1150 -0.4612 35 1 1.4844 -3.7094 -0.1626 36 1 -1.0553 -1.9441 2.5885 37 1 1.5795 -4.4832 2.1251 38 1 1.0155 -3.2919 3.3388 39 1 -1.1269 -4.3761 3.5674 40 1 -0.0273 -5.7798 3.3658 41 1 -2.1257 -5.5186 1.6933 42 1 -0.5306 -5.9784 1.0194 43 1 -1.9786 -3.3365 0.8798 44 1 -0.8460 -4.0696 -0.2913 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000083587283.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:00:33 Heat of formation + Delta-G solvation = -63.081680 kcal Electronic energy + Delta-G solvation = -20941.306574 eV Core-core repulsion = 18085.926703 eV Total energy + Delta-G solvation = -2855.379872 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 255.194 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -39.49520 -37.06059 -34.37223 -33.40174 -32.20725 -29.25548 -28.50337 -26.78754 -26.47759 -24.99650 -23.04862 -21.04105 -20.48126 -19.76546 -18.78267 -16.58668 -16.11506 -15.55522 -15.24478 -14.69739 -14.21237 -13.86841 -13.58922 -13.39094 -13.11796 -12.97759 -12.35470 -12.23272 -12.05309 -11.65185 -11.30999 -11.08314 -11.04264 -10.92382 -10.86507 -10.80777 -10.73305 -10.55241 -10.42131 -10.32734 -10.27132 -10.05454 -9.78737 -9.60297 -9.21032 -9.03523 -8.35190 -6.94732 -5.94991 -3.95175 3.35777 3.41674 3.45913 4.47687 4.53691 4.69624 4.84299 5.03364 5.24324 5.39789 5.49836 5.56544 5.61179 5.69348 5.72802 5.74480 5.78017 5.83685 5.95906 6.02747 6.13792 6.18069 6.19084 6.29210 6.35616 6.40766 6.43266 6.57243 6.63302 6.67547 6.77662 6.79058 6.82620 7.05652 7.27266 7.41242 7.54060 7.92195 8.03152 8.23602 8.39457 8.69102 9.14100 9.68572 11.15396 Molecular weight = 255.19amu Principal moments of inertia in cm(-1) A = 0.020189 B = 0.006926 C = 0.005752 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1386.577221 B = 4041.647934 C = 4867.095537 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C -0.129 4.129 3 C -0.138 4.138 4 C 0.069 3.931 5 N -0.527 5.527 6 C 0.188 3.812 7 C -0.497 4.497 8 H 0.062 0.938 9 C 0.053 3.947 10 N -0.901 5.901 11 Si 0.894 3.106 12 H -0.282 1.282 13 H -0.288 1.288 14 H -0.274 1.274 15 C 0.058 3.942 16 C 0.138 3.862 17 O -0.541 6.541 18 C -0.129 4.129 19 C -0.132 4.132 20 C -0.124 4.124 21 C -0.152 4.152 22 H 0.070 0.930 23 H 0.049 0.951 24 H 0.027 0.973 25 H 0.065 0.935 26 H 0.057 0.943 27 H 0.039 0.961 28 H 0.046 0.954 29 H 0.069 0.931 30 H 0.080 0.920 31 H 0.019 0.981 32 H 0.000 1.000 33 H 0.259 0.741 34 H 0.045 0.955 35 H 0.070 0.930 36 H 0.357 0.643 37 H 0.080 0.920 38 H 0.074 0.926 39 H 0.060 0.940 40 H 0.063 0.937 41 H 0.059 0.941 42 H 0.065 0.935 43 H 0.067 0.933 44 H 0.068 0.932 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.842 -1.734 4.622 15.642 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.192 4.192 2 C -0.149 4.149 3 C -0.196 4.196 4 C -0.059 4.059 5 N -0.250 5.250 6 C 0.063 3.937 7 C -0.536 4.536 8 H 0.080 0.920 9 C -0.147 4.147 10 N -0.541 5.541 11 Si 0.722 3.278 12 H -0.208 1.208 13 H -0.214 1.214 14 H -0.199 1.199 15 C -0.070 4.070 16 C 0.097 3.903 17 O -0.346 6.346 18 C -0.167 4.167 19 C -0.170 4.170 20 C -0.161 4.161 21 C -0.190 4.190 22 H 0.089 0.911 23 H 0.069 0.931 24 H 0.046 0.954 25 H 0.084 0.916 26 H 0.076 0.924 27 H 0.058 0.942 28 H 0.065 0.935 29 H 0.087 0.913 30 H 0.098 0.902 31 H 0.037 0.963 32 H 0.018 0.982 33 H 0.069 0.931 34 H 0.063 0.937 35 H 0.088 0.912 36 H 0.203 0.797 37 H 0.098 0.902 38 H 0.092 0.908 39 H 0.078 0.922 40 H 0.082 0.918 41 H 0.078 0.922 42 H 0.084 0.916 43 H 0.086 0.914 44 H 0.087 0.913 Dipole moment (debyes) X Y Z Total from point charges -14.152 -1.743 4.480 14.946 hybrid contribution 0.409 0.319 -0.095 0.527 sum -13.743 -1.424 4.385 14.496 Atomic orbital electron populations 1.22082 0.95534 1.02075 0.99554 1.21725 0.95537 0.96415 1.01196 1.21778 1.01368 0.96428 1.00041 1.22308 1.00262 0.87774 0.95596 1.62255 1.03123 1.14421 1.45167 1.19772 0.86545 0.96114 0.91301 1.21158 0.91079 1.46459 0.94920 0.92019 1.24977 0.99027 0.95844 0.94857 1.69967 1.24682 1.50736 1.08727 0.86556 0.82890 0.78365 0.79943 1.20782 1.21449 1.19901 1.22332 0.91483 0.99305 0.93907 1.21895 0.91487 0.83652 0.93218 1.86816 1.59589 1.30380 1.57784 1.22849 0.97602 0.97596 0.98686 1.22601 0.98076 0.99713 0.96604 1.22340 1.00085 0.97370 0.96354 1.22909 0.99032 0.96539 1.00549 0.91109 0.93147 0.95399 0.91638 0.92427 0.94160 0.93517 0.91283 0.90191 0.96276 0.98217 0.93121 0.93690 0.91159 0.79695 0.90155 0.90763 0.92165 0.91849 0.92229 0.91635 0.91381 0.91333 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.14 7.36 37.15 0.27 -1.87 16 2 C -0.13 -2.38 2.14 -90.62 -0.19 -2.58 16 3 C -0.14 -2.41 8.98 37.16 0.33 -2.07 16 4 C 0.07 1.38 4.88 -3.82 -0.02 1.36 16 5 N -0.53 -11.20 4.11 -236.08 -0.97 -12.18 16 6 C 0.19 4.88 4.55 -4.98 -0.02 4.86 16 7 C -0.50 -14.06 8.38 -34.44 -0.29 -14.35 16 8 H 0.06 1.75 7.72 -52.48 -0.41 1.35 16 9 C 0.05 1.53 5.46 -17.82 -0.10 1.44 16 10 N -0.90 -27.03 13.29 55.43 0.74 -26.30 16 11 Si 0.89 21.99 29.54 -169.99 -5.02 16.97 16 12 H -0.28 -6.85 7.11 56.52 0.40 -6.45 16 13 H -0.29 -7.04 7.11 56.52 0.40 -6.64 16 14 H -0.27 -6.63 7.11 56.52 0.40 -6.23 16 15 C 0.06 1.04 3.44 -3.82 -0.01 1.03 16 16 C 0.14 1.95 0.81 -89.50 -0.07 1.87 16 17 O -0.54 -7.24 7.06 -35.23 -0.25 -7.49 16 18 C -0.13 -1.84 5.62 -25.03 -0.14 -1.98 16 19 C -0.13 -1.46 6.91 -24.70 -0.17 -1.63 16 20 C -0.12 -1.32 6.83 -25.08 -0.17 -1.49 16 21 C -0.15 -1.78 6.24 -25.61 -0.16 -1.94 16 22 H 0.07 1.12 4.05 -51.93 -0.21 0.91 16 23 H 0.05 0.76 7.78 -51.93 -0.40 0.36 16 24 H 0.03 0.41 8.14 -51.93 -0.42 -0.01 16 25 H 0.07 1.39 5.61 -51.93 -0.29 1.10 16 26 H 0.06 1.10 8.12 -51.93 -0.42 0.68 16 27 H 0.04 0.64 8.14 -51.93 -0.42 0.21 16 28 H 0.05 0.73 8.14 -51.93 -0.42 0.31 16 29 H 0.07 1.56 6.80 -51.93 -0.35 1.20 16 30 H 0.08 1.50 5.39 -51.93 -0.28 1.22 16 31 H 0.02 0.53 7.70 -51.93 -0.40 0.13 16 32 H 0.00 0.00 6.28 -51.93 -0.33 -0.32 16 33 H 0.26 7.39 8.31 -40.82 -0.34 7.05 16 34 H 0.05 0.82 4.24 -51.93 -0.22 0.60 16 35 H 0.07 1.29 7.68 -51.93 -0.40 0.89 16 36 H 0.36 3.52 9.05 45.56 0.41 3.94 16 37 H 0.08 1.33 7.85 -51.93 -0.41 0.92 16 38 H 0.07 1.12 8.07 -51.93 -0.42 0.70 16 39 H 0.06 0.59 8.14 -51.93 -0.42 0.17 16 40 H 0.06 0.68 8.14 -51.93 -0.42 0.25 16 41 H 0.06 0.55 8.14 -51.93 -0.42 0.12 16 42 H 0.06 0.72 8.14 -51.93 -0.42 0.29 16 43 H 0.07 0.73 7.95 -51.93 -0.41 0.31 16 44 H 0.07 0.83 7.67 -51.93 -0.40 0.43 16 LS Contribution 324.21 15.07 4.89 4.89 Total: -1.00 -29.55 324.21 -8.39 -37.94 By element: Atomic # 1 Polarization: 10.54 SS G_CDS: -7.03 Total: 3.50 kcal Atomic # 6 Polarization: -16.60 SS G_CDS: -0.74 Total: -17.34 kcal Atomic # 7 Polarization: -38.24 SS G_CDS: -0.23 Total: -38.47 kcal Atomic # 8 Polarization: -7.24 SS G_CDS: -0.25 Total: -7.49 kcal Atomic # 14 Polarization: 21.99 SS G_CDS: -5.02 Total: 16.97 kcal Total LS contribution 4.89 Total: 4.89 kcal Total: -29.55 -8.39 -37.94 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000083587283.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -25.141 kcal (2) G-P(sol) polarization free energy of solvation -29.549 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -54.689 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.392 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.941 kcal (6) G-S(sol) free energy of system = (1) + (5) -63.082 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds