Wall clock time and date at job start Mon Mar 30 2020 07:00:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 C 1.53005 * 109.47241 * 2 1 4 4 C 1.53005 * 109.47299 * 119.99910 * 2 1 3 5 5 N 1.46900 * 109.47053 * 95.76820 * 4 2 1 6 6 C 1.46898 * 111.00017 * 70.12081 * 5 4 2 7 7 C 1.50694 * 109.47338 * 71.90414 * 6 5 4 8 8 H 1.08004 * 120.00065 * 5.09597 * 7 6 5 9 9 C 1.37878 * 120.00320 * 185.09316 * 7 6 5 10 10 N 1.31516 * 119.99583 * 359.97438 * 9 7 6 11 11 Si 1.86798 * 120.00044 * 180.02562 * 9 7 6 12 12 H 1.48499 * 109.47525 * 90.00036 * 11 9 7 13 13 H 1.48503 * 109.46720 * 210.00018 * 11 9 7 14 14 H 1.48495 * 109.47137 * 329.99619 * 11 9 7 15 15 C 1.46903 * 110.99944 * 306.16687 * 5 4 2 16 16 C 1.53000 * 109.46931 * 285.59892 * 15 5 4 17 17 O 1.42903 * 110.01717 * 64.79449 * 16 15 5 18 18 C 1.54273 * 110.03612 * 303.40137 * 16 15 5 19 19 C 1.54963 * 104.15924 * 217.13703 * 18 16 15 20 20 C 1.54884 * 102.77800 * 37.88606 * 19 18 16 21 21 C 1.53879 * 110.03138 * 186.18257 * 16 15 5 22 22 H 1.08997 * 109.47558 * 176.86513 * 1 2 3 23 23 H 1.08997 * 109.47313 * 296.86465 * 1 2 3 24 24 H 1.08999 * 109.46984 * 56.86528 * 1 2 3 25 25 H 1.09005 * 109.47202 * 239.99965 * 2 1 3 26 26 H 1.09000 * 109.46965 * 180.02562 * 3 2 1 27 27 H 1.09000 * 109.47088 * 299.99875 * 3 2 1 28 28 H 1.08996 * 109.47146 * 60.00097 * 3 2 1 29 29 H 1.08993 * 109.47229 * 215.77250 * 4 2 1 30 30 H 1.09002 * 109.46615 * 335.77085 * 4 2 1 31 31 H 1.08997 * 109.47258 * 191.91122 * 6 5 4 32 32 H 1.09001 * 109.46743 * 311.90348 * 6 5 4 33 33 H 0.97008 * 119.99450 * 179.97438 * 10 9 7 34 34 H 1.08994 * 109.47190 * 45.59995 * 15 5 4 35 35 H 1.09002 * 109.46742 * 165.60597 * 15 5 4 36 36 H 0.96700 * 113.99788 * 180.02562 * 17 16 15 37 37 H 1.09003 * 110.48040 * 335.78178 * 18 16 15 38 38 H 1.08999 * 110.48561 * 98.42385 * 18 16 15 39 39 H 1.08995 * 110.71859 * 279.56826 * 19 18 16 40 40 H 1.08999 * 110.76500 * 156.22064 * 19 18 16 41 41 H 1.09006 * 110.48513 * 203.40120 * 20 19 18 42 42 H 1.09002 * 110.48742 * 80.76402 * 20 19 18 43 43 H 1.09002 * 110.03146 * 238.56773 * 21 16 15 44 44 H 1.08996 * 110.03237 * 0.02562 * 21 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0400 -0.7212 1.2493 5 7 2.3345 -2.1222 0.9199 6 6 3.5179 -2.2223 0.0554 7 6 4.7542 -1.9078 0.8577 8 1 4.6790 -1.7395 1.9219 9 6 5.9813 -1.8351 0.2334 10 7 6.0730 -2.0407 -1.0624 11 14 7.5138 -1.4460 1.2281 12 1 8.1178 -2.7097 1.7215 13 1 8.4927 -0.7315 0.3700 14 1 7.1492 -0.5875 2.3836 15 6 1.1726 -2.7725 0.2992 16 6 0.1162 -3.0578 1.3686 17 8 -0.3816 -1.8301 1.9043 18 6 0.7241 -3.9182 2.4957 19 6 -0.4238 -4.8767 2.9018 20 6 -1.0923 -5.2055 1.5439 21 6 -1.0385 -3.8757 0.7638 22 1 -0.3634 -1.0261 -0.0562 23 1 -0.3634 0.4644 0.9167 24 1 -0.3633 0.5617 -0.8605 25 1 1.8933 -0.5139 -0.8900 26 1 3.1300 1.4425 -0.0005 27 1 1.6767 1.9564 -0.8900 28 1 1.6767 1.9564 0.8900 29 1 2.9472 -0.2333 1.6056 30 1 1.2775 -0.6834 2.0273 31 1 3.5916 -3.2336 -0.3442 32 1 3.4281 -1.5124 -0.7669 33 1 6.9363 -1.9891 -1.5017 34 1 0.7515 -2.1150 -0.4612 35 1 1.4844 -3.7094 -0.1626 36 1 -1.0553 -1.9441 2.5885 37 1 1.5795 -4.4832 2.1251 38 1 1.0155 -3.2919 3.3388 39 1 -1.1269 -4.3761 3.5674 40 1 -0.0273 -5.7798 3.3658 41 1 -2.1257 -5.5186 1.6933 42 1 -0.5306 -5.9784 1.0194 43 1 -1.9786 -3.3365 0.8798 44 1 -0.8460 -4.0696 -0.2913 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000083587283.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:00:32 Heat of formation + Delta-G solvation = -82.252160 kcal Electronic energy + Delta-G solvation = -20942.137869 eV Core-core repulsion = 18085.926703 eV Total energy + Delta-G solvation = -2856.211166 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 255.194 amu Computer time = 0.48 seconds Orbital eigenvalues (eV) -40.76688 -38.51491 -35.50136 -35.14969 -34.12266 -30.70853 -29.58211 -28.56856 -27.91533 -26.54241 -24.78977 -22.67568 -21.47283 -21.08650 -20.25655 -18.32050 -17.70210 -16.95330 -16.71524 -16.45869 -15.55428 -15.45253 -14.76616 -14.54540 -14.49250 -14.39111 -14.15383 -13.99746 -13.31931 -13.04404 -12.91997 -12.89295 -12.55916 -12.43730 -12.25153 -12.12446 -12.00652 -11.95727 -11.85854 -11.81726 -11.64428 -11.44051 -11.34440 -11.23919 -10.91528 -10.59086 -10.38837 -8.72302 -8.17098 -6.26922 1.38586 1.40017 1.51278 2.40333 3.13818 3.36350 3.49276 3.82458 3.90569 4.03777 4.10572 4.24324 4.32044 4.33297 4.59200 4.65981 4.71026 4.76854 4.82394 4.84980 4.87833 4.88368 4.97287 5.03383 5.07210 5.12055 5.19131 5.22848 5.27348 5.33235 5.37339 5.38666 5.49626 5.52096 5.57194 5.62787 5.68026 5.82068 6.14324 6.49891 6.76669 6.91795 7.15002 7.42463 8.92555 Molecular weight = 255.19amu Principal moments of inertia in cm(-1) A = 0.020189 B = 0.006926 C = 0.005752 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1386.577221 B = 4041.647934 C = 4867.095537 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.123 4.123 2 C -0.126 4.126 3 C -0.134 4.134 4 C 0.076 3.924 5 N -0.529 5.529 6 C 0.206 3.794 7 C -0.513 4.513 8 H 0.057 0.943 9 C 0.001 3.999 10 N -0.936 5.936 11 Si 0.964 3.036 12 H -0.273 1.273 13 H -0.282 1.282 14 H -0.266 1.266 15 C 0.056 3.944 16 C 0.149 3.851 17 O -0.550 6.550 18 C -0.131 4.131 19 C -0.122 4.122 20 C -0.120 4.120 21 C -0.145 4.145 22 H 0.071 0.929 23 H 0.064 0.936 24 H 0.039 0.961 25 H 0.030 0.970 26 H 0.028 0.972 27 H 0.056 0.944 28 H 0.067 0.933 29 H 0.037 0.963 30 H 0.101 0.899 31 H -0.010 1.010 32 H -0.029 1.029 33 H 0.262 0.738 34 H 0.044 0.956 35 H 0.054 0.946 36 H 0.379 0.621 37 H 0.046 0.954 38 H 0.062 0.938 39 H 0.083 0.917 40 H 0.066 0.934 41 H 0.085 0.915 42 H 0.056 0.944 43 H 0.090 0.910 44 H 0.060 0.940 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.877 -1.384 6.204 18.034 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.179 4.179 2 C -0.146 4.146 3 C -0.192 4.192 4 C -0.052 4.052 5 N -0.252 5.252 6 C 0.080 3.920 7 C -0.551 4.551 8 H 0.075 0.925 9 C -0.197 4.197 10 N -0.577 5.577 11 Si 0.789 3.211 12 H -0.198 1.198 13 H -0.208 1.208 14 H -0.190 1.190 15 C -0.072 4.072 16 C 0.108 3.892 17 O -0.358 6.358 18 C -0.169 4.169 19 C -0.159 4.159 20 C -0.157 4.157 21 C -0.184 4.184 22 H 0.090 0.910 23 H 0.083 0.917 24 H 0.058 0.942 25 H 0.048 0.952 26 H 0.047 0.953 27 H 0.075 0.925 28 H 0.086 0.914 29 H 0.056 0.944 30 H 0.118 0.882 31 H 0.008 0.992 32 H -0.012 1.012 33 H 0.071 0.929 34 H 0.062 0.938 35 H 0.073 0.927 36 H 0.228 0.772 37 H 0.065 0.935 38 H 0.081 0.919 39 H 0.102 0.898 40 H 0.085 0.915 41 H 0.103 0.897 42 H 0.075 0.925 43 H 0.108 0.892 44 H 0.079 0.921 Dipole moment (debyes) X Y Z Total from point charges -16.219 -1.396 6.082 17.378 hybrid contribution 1.014 0.214 -0.602 1.198 sum -15.205 -1.182 5.480 16.205 Atomic orbital electron populations 1.21944 0.92646 1.02546 1.00797 1.21655 0.97859 0.96480 0.98622 1.21733 0.99523 0.96038 1.01897 1.22269 0.99319 0.86820 0.96820 1.62203 1.03132 1.15706 1.44136 1.19386 0.88491 0.93337 0.90828 1.21424 0.92313 1.46576 0.94825 0.92513 1.25871 1.02416 0.95442 0.95930 1.70096 1.25650 1.51516 1.10431 0.85455 0.78608 0.78497 0.78512 1.19833 1.20780 1.19039 1.22421 0.91262 0.98029 0.95475 1.21611 0.91298 0.84187 0.92079 1.86704 1.60518 1.29826 1.58703 1.22772 0.97926 0.97962 0.98208 1.22550 0.96974 0.99088 0.97279 1.22334 1.01409 0.96412 0.95592 1.22839 0.98580 0.96906 1.00029 0.91042 0.91717 0.94198 0.95193 0.95294 0.92519 0.91370 0.94448 0.88156 0.99160 1.01182 0.92882 0.93835 0.92725 0.77186 0.93494 0.91891 0.89836 0.91507 0.89684 0.92491 0.89185 0.92115 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -3.62 7.36 71.98 0.53 -3.09 16 2 C -0.13 -4.71 2.14 -10.79 -0.02 -4.73 16 3 C -0.13 -4.63 8.98 71.98 0.65 -3.99 16 4 C 0.08 3.08 4.88 86.30 0.42 3.50 16 5 N -0.53 -23.50 4.11 -900.81 -3.70 -27.20 16 6 C 0.21 11.40 4.55 85.56 0.39 11.79 16 7 C -0.51 -30.22 8.38 25.60 0.21 -30.00 16 8 H 0.06 3.33 7.72 -2.91 -0.02 3.31 16 9 C 0.00 0.05 5.46 84.65 0.46 0.51 16 10 N -0.94 -58.07 13.29 21.45 0.28 -57.79 16 11 Si 0.96 45.88 29.54 68.60 2.03 47.90 16 12 H -0.27 -12.55 7.11 99.48 0.71 -11.84 16 13 H -0.28 -13.08 7.11 99.48 0.71 -12.37 16 14 H -0.27 -12.21 7.11 99.48 0.71 -11.51 16 15 C 0.06 2.07 3.44 86.30 0.30 2.37 16 16 C 0.15 4.02 0.81 -10.07 -0.01 4.02 16 17 O -0.55 -13.23 7.06 -148.98 -1.05 -14.28 16 18 C -0.13 -3.62 5.62 31.70 0.18 -3.45 16 19 C -0.12 -2.36 6.91 31.91 0.22 -2.14 16 20 C -0.12 -2.21 6.83 31.67 0.22 -1.99 16 21 C -0.15 -3.05 6.24 31.32 0.20 -2.86 16 22 H 0.07 2.11 4.05 -2.39 -0.01 2.10 16 23 H 0.06 1.74 7.78 -2.39 -0.02 1.73 16 24 H 0.04 1.08 8.14 -2.39 -0.02 1.06 16 25 H 0.03 1.33 5.61 -2.38 -0.01 1.31 16 26 H 0.03 1.13 8.12 -2.39 -0.02 1.11 16 27 H 0.06 1.74 8.14 -2.39 -0.02 1.73 16 28 H 0.07 2.04 8.14 -2.39 -0.02 2.02 16 29 H 0.04 1.74 6.80 -2.39 -0.02 1.72 16 30 H 0.10 3.67 5.39 -2.39 -0.01 3.66 16 31 H -0.01 -0.58 7.70 -2.39 -0.02 -0.60 16 32 H -0.03 -1.78 6.28 -2.39 -0.01 -1.79 16 33 H 0.26 15.32 8.31 -92.70 -0.77 14.55 16 34 H 0.04 1.62 4.24 -2.39 -0.01 1.61 16 35 H 0.05 2.14 7.68 -2.39 -0.02 2.12 16 36 H 0.38 5.92 9.05 -74.06 -0.67 5.25 16 37 H 0.05 1.60 7.85 -2.39 -0.02 1.58 16 38 H 0.06 1.86 8.07 -2.39 -0.02 1.84 16 39 H 0.08 1.28 8.14 -2.39 -0.02 1.26 16 40 H 0.07 1.28 8.14 -2.39 -0.02 1.26 16 41 H 0.08 1.20 8.14 -2.38 -0.02 1.18 16 42 H 0.06 1.15 8.14 -2.39 -0.02 1.13 16 43 H 0.09 1.54 7.95 -2.39 -0.02 1.52 16 44 H 0.06 1.39 7.67 -2.39 -0.02 1.37 16 Total: -1.00 -66.70 324.21 1.59 -65.11 By element: Atomic # 1 Polarization: 16.02 SS G_CDS: 0.29 Total: 16.31 kcal Atomic # 6 Polarization: -33.79 SS G_CDS: 3.74 Total: -30.06 kcal Atomic # 7 Polarization: -81.57 SS G_CDS: -3.42 Total: -84.99 kcal Atomic # 8 Polarization: -13.23 SS G_CDS: -1.05 Total: -14.28 kcal Atomic # 14 Polarization: 45.88 SS G_CDS: 2.03 Total: 47.90 kcal Total: -66.70 1.59 -65.11 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000083587283.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -17.143 kcal (2) G-P(sol) polarization free energy of solvation -66.698 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -83.841 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.589 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.109 kcal (6) G-S(sol) free energy of system = (1) + (5) -82.252 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.48 seconds