Wall clock time and date at job start Mon Mar 30 2020 06:27:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 C 1.52998 * 109.47300 * 2 1 4 4 C 1.52995 * 109.47163 * 120.00449 * 2 1 3 5 5 C 1.53008 * 109.47127 * 174.99709 * 4 2 1 6 6 O 1.42906 * 109.46922 * 180.02562 * 5 4 2 7 7 C 1.42901 * 113.99630 * 180.02562 * 6 5 4 8 8 C 1.53001 * 109.46953 * 179.97438 * 7 6 5 9 9 N 1.46906 * 109.46923 * 64.99975 * 8 7 6 10 10 C 1.46894 * 110.99880 * 180.02562 * 9 8 7 11 11 C 1.52999 * 109.47155 * 185.38213 * 10 9 8 12 12 C 1.50708 * 115.54730 * 294.80053 * 11 10 9 13 13 H 1.07994 * 120.00501 * 95.20134 * 12 11 10 14 14 C 1.37881 * 119.99823 * 274.92856 * 12 11 10 15 15 N 1.31521 * 119.99926 * 355.42157 * 14 12 11 16 16 Si 1.86801 * 120.00038 * 175.41588 * 14 12 11 17 17 H 1.48495 * 109.46929 * 0.02562 * 16 14 12 18 18 H 1.48503 * 109.46745 * 120.00135 * 16 14 12 19 19 H 1.48498 * 109.47103 * 239.99813 * 16 14 12 20 20 C 1.52996 * 117.50305 * 80.46470 * 11 10 9 21 21 C 1.52994 * 117.50444 * 149.12972 * 11 10 9 22 22 H 1.09004 * 109.46922 * 299.99660 * 1 2 3 23 23 H 1.09002 * 109.47458 * 59.99575 * 1 2 3 24 24 H 1.08997 * 109.47662 * 179.97438 * 1 2 3 25 25 H 1.09004 * 109.46922 * 240.00340 * 2 1 3 26 26 H 1.09004 * 109.46856 * 60.00300 * 3 2 1 27 27 H 1.09002 * 109.47242 * 180.02562 * 3 2 1 28 28 H 1.08993 * 109.47385 * 300.00426 * 3 2 1 29 29 H 1.08998 * 109.47024 * 54.99822 * 4 2 1 30 30 H 1.08998 * 109.47416 * 294.99606 * 4 2 1 31 31 H 1.08998 * 109.47076 * 60.00145 * 5 4 2 32 32 H 1.08998 * 109.46888 * 300.00220 * 5 4 2 33 33 H 1.09003 * 109.47069 * 60.00087 * 7 6 5 34 34 H 1.09002 * 109.46880 * 300.00042 * 7 6 5 35 35 H 1.08996 * 109.47149 * 305.00362 * 8 7 6 36 36 H 1.09001 * 109.47006 * 184.99651 * 8 7 6 37 37 H 1.00901 * 110.99671 * 303.95463 * 9 8 7 38 38 H 1.08995 * 109.47366 * 65.38019 * 10 9 8 39 39 H 1.09006 * 109.46837 * 305.37455 * 10 9 8 40 40 H 0.96995 * 119.99832 * 185.00406 * 15 14 12 41 41 H 1.08999 * 117.50032 * 215.00249 * 20 11 10 42 42 H 1.09002 * 117.49839 * 0.02981 * 20 11 10 43 43 H 1.09004 * 117.49798 * 359.97366 * 21 11 10 44 44 H 1.09005 * 117.50278 * 144.97026 * 21 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0399 -0.7213 1.2491 5 6 3.5648 -0.8312 1.1878 6 8 4.0411 -1.5055 2.3543 7 6 5.4610 -1.6608 2.3967 8 6 5.8560 -2.3909 3.6820 9 7 5.3161 -3.7569 3.6548 10 6 5.6758 -4.4895 4.8762 11 6 5.2138 -5.9429 4.7538 12 6 3.7223 -6.1472 4.6844 13 1 3.2335 -6.2368 3.7256 14 6 2.9824 -6.2252 5.8453 15 7 3.5875 -6.2120 7.0129 16 14 1.1205 -6.3497 5.7596 17 1 0.6891 -6.3456 4.3387 18 1 0.6784 -7.6109 6.4071 19 1 0.5141 -5.1921 6.4650 20 6 6.0959 -6.8993 3.9488 21 6 6.0401 -7.0100 5.4745 22 1 -0.3633 0.5138 0.8901 23 1 -0.3634 0.5139 -0.8899 24 1 -0.3634 -1.0276 -0.0005 25 1 1.8933 -0.5138 -0.8901 26 1 1.6767 1.9563 0.8901 27 1 3.1300 1.4425 -0.0005 28 1 1.6767 1.9563 -0.8899 29 1 1.6053 -1.7198 1.2950 30 1 1.7517 -0.1585 2.1369 31 1 3.9995 0.1673 1.1420 32 1 3.8531 -1.3940 0.3000 33 1 5.9347 -0.6793 2.3767 34 1 5.7890 -2.2403 1.5337 35 1 5.4512 -1.8574 4.5420 36 1 6.9426 -2.4311 3.7577 37 1 4.3162 -3.7479 3.5201 38 1 5.1906 -4.0251 5.7346 39 1 6.7571 -4.4621 5.0111 40 1 3.0749 -6.3397 7.8263 41 1 5.5975 -7.6762 3.3691 42 1 7.0057 -6.4931 3.5067 43 1 6.9132 -6.6766 6.0355 44 1 5.5050 -7.8595 5.8988 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000083854070.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:27:05 Heat of formation + Delta-G solvation = -49.640891 kcal Electronic energy + Delta-G solvation = -19177.458629 eV Core-core repulsion = 16322.661594 eV Total energy + Delta-G solvation = -2854.797035 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 255.194 amu Computer time = 0.39 seconds Orbital eigenvalues (eV) -38.29152 -36.91604 -36.22526 -34.07176 -31.81506 -29.99933 -28.16017 -27.35677 -25.49871 -23.86250 -23.08265 -21.41772 -20.78909 -20.04049 -18.94500 -16.55574 -16.17855 -15.82943 -15.31788 -14.67342 -14.60937 -14.44128 -13.96779 -13.74224 -13.61601 -13.01077 -12.79421 -12.44913 -12.31049 -11.91371 -11.58485 -11.52832 -11.41321 -11.19332 -10.95174 -10.89804 -10.79682 -10.72656 -10.69560 -10.55507 -10.35365 -10.01564 -9.40232 -9.22492 -8.75669 -8.31727 -7.97194 -7.40852 -5.93964 -4.00570 3.32606 3.41101 3.45865 3.79661 4.47017 4.71662 4.75207 4.86332 4.91839 5.16440 5.30141 5.34316 5.39526 5.46061 5.51445 5.53739 5.58094 5.60505 5.65630 5.73915 5.81867 5.85006 5.89510 6.04792 6.10229 6.22092 6.22722 6.26896 6.29344 6.56028 6.65425 6.91625 6.93277 7.00319 7.27754 7.42004 7.59761 7.68587 7.96689 8.08435 8.41740 8.58818 9.03152 9.64925 11.13392 Molecular weight = 255.19amu Principal moments of inertia in cm(-1) A = 0.017344 B = 0.004894 C = 0.004049 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1613.992324 B = 5719.613412 C = 6913.020546 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.094 4.094 3 C -0.151 4.151 4 C -0.116 4.116 5 C 0.064 3.936 6 O -0.384 6.384 7 C 0.067 3.933 8 C 0.059 3.941 9 N -0.679 5.679 10 C 0.105 3.895 11 C 0.047 3.953 12 C -0.488 4.488 13 H 0.060 0.940 14 C 0.069 3.931 15 N -0.881 5.881 16 Si 0.886 3.114 17 H -0.272 1.272 18 H -0.286 1.286 19 H -0.285 1.285 20 C -0.201 4.201 21 C -0.156 4.156 22 H 0.055 0.945 23 H 0.053 0.947 24 H 0.057 0.943 25 H 0.070 0.930 26 H 0.055 0.945 27 H 0.055 0.945 28 H 0.052 0.948 29 H 0.074 0.926 30 H 0.069 0.931 31 H 0.044 0.956 32 H 0.045 0.955 33 H 0.043 0.957 34 H 0.056 0.944 35 H 0.028 0.972 36 H 0.075 0.925 37 H 0.355 0.645 38 H 0.030 0.970 39 H 0.037 0.963 40 H 0.257 0.743 41 H 0.072 0.928 42 H 0.063 0.937 43 H 0.057 0.943 44 H 0.081 0.919 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.419 13.095 -11.372 17.349 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.113 4.113 3 C -0.208 4.208 4 C -0.154 4.154 5 C -0.013 4.013 6 O -0.303 6.303 7 C -0.010 4.010 8 C -0.071 4.071 9 N -0.312 5.312 10 C -0.024 4.024 11 C 0.047 3.953 12 C -0.526 4.526 13 H 0.078 0.922 14 C -0.134 4.134 15 N -0.519 5.519 16 Si 0.714 3.286 17 H -0.196 1.196 18 H -0.212 1.212 19 H -0.211 1.211 20 C -0.239 4.239 21 C -0.195 4.195 22 H 0.074 0.926 23 H 0.072 0.928 24 H 0.076 0.924 25 H 0.089 0.911 26 H 0.074 0.926 27 H 0.074 0.926 28 H 0.072 0.928 29 H 0.093 0.907 30 H 0.088 0.912 31 H 0.062 0.938 32 H 0.064 0.936 33 H 0.061 0.939 34 H 0.074 0.926 35 H 0.046 0.954 36 H 0.093 0.907 37 H 0.175 0.825 38 H 0.048 0.952 39 H 0.055 0.945 40 H 0.067 0.933 41 H 0.090 0.910 42 H 0.082 0.918 43 H 0.076 0.924 44 H 0.100 0.900 Dipole moment (debyes) X Y Z Total from point charges -0.065 12.843 -11.382 17.161 hybrid contribution -1.339 0.403 0.609 1.525 sum -1.404 13.246 -10.773 17.131 Atomic orbital electron populations 1.21826 0.94918 1.02042 1.01646 1.21046 0.95987 0.96154 0.98095 1.21925 1.01091 0.96075 1.01698 1.21588 0.93917 1.01799 0.98072 1.22492 0.94996 0.95487 0.88324 1.87920 1.21889 1.78605 1.41926 1.22579 0.81144 0.97940 0.99296 1.21920 0.99475 0.90830 0.94849 1.60494 1.20047 1.11436 1.39183 1.21447 0.96431 0.95187 0.89334 1.18744 0.92279 0.86523 0.97784 1.20514 0.89949 1.49841 0.92324 0.92188 1.25001 0.98007 0.94843 0.95538 1.70023 1.35238 1.49305 0.97312 0.86627 0.86305 0.77451 0.78205 1.19632 1.21196 1.21102 1.22864 1.01757 1.05164 0.94097 1.22496 1.00979 1.03932 0.92047 0.92597 0.92776 0.92413 0.91129 0.92577 0.92568 0.92847 0.90724 0.91203 0.93784 0.93648 0.93900 0.92623 0.95363 0.90696 0.82535 0.95206 0.94474 0.93282 0.90988 0.91845 0.92416 0.90028 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.27 9.19 37.15 0.34 -0.93 16 2 C -0.09 -0.87 2.92 -90.63 -0.26 -1.13 16 3 C -0.15 -1.23 8.95 37.16 0.33 -0.90 16 4 C -0.12 -1.35 5.05 -26.73 -0.14 -1.48 16 5 C 0.06 0.79 5.69 37.16 0.21 1.00 16 6 O -0.38 -6.13 9.86 -35.23 -0.35 -6.48 16 7 C 0.07 0.97 6.28 37.16 0.23 1.21 16 8 C 0.06 1.00 6.10 -3.82 -0.02 0.98 16 9 N -0.68 -14.05 6.47 -113.78 -0.74 -14.78 16 10 C 0.10 2.43 5.54 -3.83 -0.02 2.41 16 11 C 0.05 1.20 1.65 -155.66 -0.26 0.94 16 12 C -0.49 -13.50 8.33 -34.43 -0.29 -13.78 16 13 H 0.06 1.68 7.82 -52.49 -0.41 1.27 16 14 C 0.07 1.91 5.43 -17.82 -0.10 1.81 16 15 N -0.88 -25.38 12.65 55.43 0.70 -24.68 16 16 Si 0.89 21.52 29.54 -169.99 -5.02 16.49 16 17 H -0.27 -6.52 7.11 56.52 0.40 -6.12 16 18 H -0.29 -6.90 7.11 56.52 0.40 -6.50 16 19 H -0.28 -6.92 7.11 56.52 0.40 -6.52 16 20 C -0.20 -4.67 9.96 -26.70 -0.27 -4.93 16 21 C -0.16 -3.84 9.14 -26.70 -0.24 -4.09 16 22 H 0.05 0.48 8.14 -51.93 -0.42 0.06 16 23 H 0.05 0.41 8.14 -51.93 -0.42 -0.02 16 24 H 0.06 0.51 8.14 -51.93 -0.42 0.09 16 25 H 0.07 0.63 8.14 -51.93 -0.42 0.21 16 26 H 0.06 0.46 8.14 -51.93 -0.42 0.04 16 27 H 0.06 0.45 6.57 -51.93 -0.34 0.11 16 28 H 0.05 0.38 8.14 -51.93 -0.42 -0.04 16 29 H 0.07 0.96 8.14 -51.93 -0.42 0.53 16 30 H 0.07 0.84 8.14 -51.93 -0.42 0.42 16 31 H 0.04 0.48 6.57 -51.93 -0.34 0.14 16 32 H 0.05 0.53 8.14 -51.93 -0.42 0.11 16 33 H 0.04 0.52 8.14 -51.93 -0.42 0.10 16 34 H 0.06 0.79 8.14 -51.93 -0.42 0.37 16 35 H 0.03 0.50 8.14 -51.93 -0.42 0.07 16 36 H 0.07 1.14 8.14 -51.93 -0.42 0.72 16 37 H 0.36 7.97 7.86 -39.29 -0.31 7.66 16 38 H 0.03 0.76 8.14 -51.93 -0.42 0.34 16 39 H 0.04 0.81 8.08 -51.93 -0.42 0.39 16 40 H 0.26 7.10 8.32 -40.82 -0.34 6.76 16 41 H 0.07 1.66 8.14 -51.93 -0.42 1.24 16 42 H 0.06 1.36 8.14 -51.93 -0.42 0.94 16 43 H 0.06 1.33 8.14 -51.93 -0.42 0.91 16 44 H 0.08 2.15 8.14 -51.93 -0.42 1.72 16 LS Contribution 355.84 15.07 5.36 5.36 Total: -1.00 -28.90 355.84 -9.08 -37.99 By element: Atomic # 1 Polarization: 13.56 SS G_CDS: -8.57 Total: 5.00 kcal Atomic # 6 Polarization: -18.42 SS G_CDS: -0.48 Total: -18.90 kcal Atomic # 7 Polarization: -39.43 SS G_CDS: -0.04 Total: -39.46 kcal Atomic # 8 Polarization: -6.13 SS G_CDS: -0.35 Total: -6.48 kcal Atomic # 14 Polarization: 21.52 SS G_CDS: -5.02 Total: 16.49 kcal Total LS contribution 5.36 Total: 5.36 kcal Total: -28.90 -9.08 -37.99 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000083854070.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -11.654 kcal (2) G-P(sol) polarization free energy of solvation -28.904 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -40.557 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.083 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.987 kcal (6) G-S(sol) free energy of system = (1) + (5) -49.641 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.39 seconds