Wall clock time and date at job start Mon Mar 30 2020 06:27:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 C 1.52998 * 109.47300 * 2 1 4 4 C 1.52995 * 109.47163 * 120.00449 * 2 1 3 5 5 C 1.53008 * 109.47127 * 174.99709 * 4 2 1 6 6 O 1.42906 * 109.46922 * 180.02562 * 5 4 2 7 7 C 1.42901 * 113.99630 * 180.02562 * 6 5 4 8 8 C 1.53001 * 109.46953 * 179.97438 * 7 6 5 9 9 N 1.46906 * 109.46923 * 64.99975 * 8 7 6 10 10 C 1.46894 * 110.99880 * 180.02562 * 9 8 7 11 11 C 1.52999 * 109.47155 * 185.38213 * 10 9 8 12 12 C 1.50708 * 115.54730 * 294.80053 * 11 10 9 13 13 H 1.07994 * 120.00501 * 95.20134 * 12 11 10 14 14 C 1.37881 * 119.99823 * 274.92856 * 12 11 10 15 15 N 1.31521 * 119.99926 * 355.42157 * 14 12 11 16 16 Si 1.86801 * 120.00038 * 175.41588 * 14 12 11 17 17 H 1.48495 * 109.46929 * 0.02562 * 16 14 12 18 18 H 1.48503 * 109.46745 * 120.00135 * 16 14 12 19 19 H 1.48498 * 109.47103 * 239.99813 * 16 14 12 20 20 C 1.52996 * 117.50305 * 80.46470 * 11 10 9 21 21 C 1.52994 * 117.50444 * 149.12972 * 11 10 9 22 22 H 1.09004 * 109.46922 * 299.99660 * 1 2 3 23 23 H 1.09002 * 109.47458 * 59.99575 * 1 2 3 24 24 H 1.08997 * 109.47662 * 179.97438 * 1 2 3 25 25 H 1.09004 * 109.46922 * 240.00340 * 2 1 3 26 26 H 1.09004 * 109.46856 * 60.00300 * 3 2 1 27 27 H 1.09002 * 109.47242 * 180.02562 * 3 2 1 28 28 H 1.08993 * 109.47385 * 300.00426 * 3 2 1 29 29 H 1.08998 * 109.47024 * 54.99822 * 4 2 1 30 30 H 1.08998 * 109.47416 * 294.99606 * 4 2 1 31 31 H 1.08998 * 109.47076 * 60.00145 * 5 4 2 32 32 H 1.08998 * 109.46888 * 300.00220 * 5 4 2 33 33 H 1.09003 * 109.47069 * 60.00087 * 7 6 5 34 34 H 1.09002 * 109.46880 * 300.00042 * 7 6 5 35 35 H 1.08996 * 109.47149 * 305.00362 * 8 7 6 36 36 H 1.09001 * 109.47006 * 184.99651 * 8 7 6 37 37 H 1.00901 * 110.99671 * 303.95463 * 9 8 7 38 38 H 1.08995 * 109.47366 * 65.38019 * 10 9 8 39 39 H 1.09006 * 109.46837 * 305.37455 * 10 9 8 40 40 H 0.96995 * 119.99832 * 185.00406 * 15 14 12 41 41 H 1.08999 * 117.50032 * 215.00249 * 20 11 10 42 42 H 1.09002 * 117.49839 * 0.02981 * 20 11 10 43 43 H 1.09004 * 117.49798 * 359.97366 * 21 11 10 44 44 H 1.09005 * 117.50278 * 144.97026 * 21 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0399 -0.7213 1.2491 5 6 3.5648 -0.8312 1.1878 6 8 4.0411 -1.5055 2.3543 7 6 5.4610 -1.6608 2.3967 8 6 5.8560 -2.3909 3.6820 9 7 5.3161 -3.7569 3.6548 10 6 5.6758 -4.4895 4.8762 11 6 5.2138 -5.9429 4.7538 12 6 3.7223 -6.1472 4.6844 13 1 3.2335 -6.2368 3.7256 14 6 2.9824 -6.2252 5.8453 15 7 3.5875 -6.2120 7.0129 16 14 1.1205 -6.3497 5.7596 17 1 0.6891 -6.3456 4.3387 18 1 0.6784 -7.6109 6.4071 19 1 0.5141 -5.1921 6.4650 20 6 6.0959 -6.8993 3.9488 21 6 6.0401 -7.0100 5.4745 22 1 -0.3633 0.5138 0.8901 23 1 -0.3634 0.5139 -0.8899 24 1 -0.3634 -1.0276 -0.0005 25 1 1.8933 -0.5138 -0.8901 26 1 1.6767 1.9563 0.8901 27 1 3.1300 1.4425 -0.0005 28 1 1.6767 1.9563 -0.8899 29 1 1.6053 -1.7198 1.2950 30 1 1.7517 -0.1585 2.1369 31 1 3.9995 0.1673 1.1420 32 1 3.8531 -1.3940 0.3000 33 1 5.9347 -0.6793 2.3767 34 1 5.7890 -2.2403 1.5337 35 1 5.4512 -1.8574 4.5420 36 1 6.9426 -2.4311 3.7577 37 1 4.3162 -3.7479 3.5201 38 1 5.1906 -4.0251 5.7346 39 1 6.7571 -4.4621 5.0111 40 1 3.0749 -6.3397 7.8263 41 1 5.5975 -7.6762 3.3691 42 1 7.0057 -6.4931 3.5067 43 1 6.9132 -6.6766 6.0355 44 1 5.5050 -7.8595 5.8988 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000083854070.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:27:05 Heat of formation + Delta-G solvation = -66.189653 kcal Electronic energy + Delta-G solvation = -19178.176238 eV Core-core repulsion = 16322.661594 eV Total energy + Delta-G solvation = -2855.514643 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 255.194 amu Computer time = 0.41 seconds Orbital eigenvalues (eV) -39.42024 -38.64092 -37.22870 -35.60118 -33.93466 -31.12212 -29.39385 -28.02113 -27.56795 -25.55014 -23.99745 -22.93113 -22.53641 -20.97723 -20.78724 -17.94548 -17.66625 -17.14841 -16.62881 -16.56445 -15.88579 -15.76718 -15.39575 -15.07177 -14.73728 -14.47227 -14.01319 -13.75447 -13.27348 -13.18251 -13.09907 -12.96848 -12.86289 -12.78729 -12.45605 -12.34063 -12.23377 -12.07983 -11.93823 -11.64989 -11.51778 -11.48214 -11.17741 -10.81053 -10.45704 -10.36031 -9.90489 -9.11398 -8.07088 -6.18764 1.38161 1.41572 1.52262 2.43287 2.77277 3.20327 3.32909 3.78141 3.93031 3.96530 4.07334 4.21291 4.30470 4.35977 4.41698 4.50449 4.51230 4.59360 4.67872 4.70838 4.76985 4.81423 4.85999 4.89585 4.95312 5.01192 5.03725 5.07418 5.10649 5.12303 5.13305 5.30470 5.32622 5.45223 5.49439 5.67204 5.72884 5.82824 6.32431 6.41839 6.49947 6.64943 6.90440 7.49162 8.99872 Molecular weight = 255.19amu Principal moments of inertia in cm(-1) A = 0.017344 B = 0.004894 C = 0.004049 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1613.992324 B = 5719.613412 C = 6913.020546 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.090 4.090 3 C -0.149 4.149 4 C -0.115 4.115 5 C 0.061 3.939 6 O -0.416 6.416 7 C 0.072 3.928 8 C 0.057 3.943 9 N -0.677 5.677 10 C 0.119 3.881 11 C 0.021 3.979 12 C -0.499 4.499 13 H 0.049 0.951 14 C 0.024 3.976 15 N -0.909 5.909 16 Si 0.945 3.055 17 H -0.268 1.268 18 H -0.281 1.281 19 H -0.284 1.284 20 C -0.178 4.178 21 C -0.160 4.160 22 H 0.053 0.947 23 H 0.068 0.932 24 H 0.050 0.950 25 H 0.075 0.925 26 H 0.053 0.947 27 H 0.058 0.942 28 H 0.066 0.934 29 H 0.054 0.946 30 H 0.060 0.940 31 H 0.064 0.936 32 H 0.051 0.949 33 H 0.074 0.926 34 H 0.059 0.941 35 H 0.017 0.983 36 H 0.095 0.905 37 H 0.342 0.658 38 H -0.004 1.004 39 H 0.053 0.947 40 H 0.258 0.742 41 H 0.069 0.931 42 H 0.087 0.913 43 H 0.070 0.930 44 H 0.057 0.943 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.072 14.267 -12.869 19.213 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.109 4.109 3 C -0.206 4.206 4 C -0.153 4.153 5 C -0.015 4.015 6 O -0.336 6.336 7 C -0.005 4.005 8 C -0.073 4.073 9 N -0.308 5.308 10 C -0.011 4.011 11 C 0.020 3.980 12 C -0.538 4.538 13 H 0.067 0.933 14 C -0.176 4.176 15 N -0.547 5.547 16 Si 0.771 3.229 17 H -0.192 1.192 18 H -0.207 1.207 19 H -0.210 1.210 20 C -0.215 4.215 21 C -0.199 4.199 22 H 0.072 0.928 23 H 0.087 0.913 24 H 0.069 0.931 25 H 0.094 0.906 26 H 0.072 0.928 27 H 0.077 0.923 28 H 0.085 0.915 29 H 0.073 0.927 30 H 0.079 0.921 31 H 0.082 0.918 32 H 0.070 0.930 33 H 0.092 0.908 34 H 0.077 0.923 35 H 0.036 0.964 36 H 0.113 0.887 37 H 0.160 0.840 38 H 0.014 0.986 39 H 0.071 0.929 40 H 0.067 0.933 41 H 0.088 0.912 42 H 0.105 0.895 43 H 0.089 0.911 44 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges 0.292 14.020 -12.897 19.052 hybrid contribution -1.425 0.050 1.048 1.769 sum -1.133 14.070 -11.849 18.430 Atomic orbital electron populations 1.21835 0.94578 1.01799 1.02273 1.21029 0.96275 0.96697 0.96878 1.21910 1.01265 0.95171 1.02242 1.21599 0.93720 1.00884 0.99076 1.22661 0.95223 0.96249 0.87365 1.87886 1.22719 1.79377 1.43629 1.22560 0.80903 0.99210 0.97798 1.22088 1.00424 0.88784 0.95986 1.60503 1.19089 1.13759 1.37493 1.21203 0.96768 0.93983 0.89138 1.18907 0.91637 0.88011 0.99403 1.20717 0.91570 1.49584 0.91882 0.93278 1.25646 1.01890 0.94758 0.95274 1.70120 1.36618 1.50249 0.97734 0.85707 0.81574 0.77391 0.78220 1.19220 1.20685 1.21023 1.22841 1.01813 1.03869 0.93012 1.22400 1.01151 1.03013 0.93305 0.92821 0.91302 0.93125 0.90617 0.92829 0.92268 0.91536 0.92701 0.92079 0.91826 0.93047 0.90828 0.92281 0.96450 0.88696 0.84031 0.98580 0.92896 0.93325 0.91192 0.89464 0.91106 0.92472 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.38 9.19 71.98 0.66 -1.71 16 2 C -0.09 -1.53 2.92 -10.80 -0.03 -1.57 16 3 C -0.15 -2.12 8.95 71.98 0.64 -1.47 16 4 C -0.12 -2.61 5.05 30.60 0.15 -2.46 16 5 C 0.06 1.42 5.69 71.98 0.41 1.83 16 6 O -0.42 -12.89 9.86 -148.98 -1.47 -14.36 16 7 C 0.07 1.93 6.28 71.98 0.45 2.38 16 8 C 0.06 1.83 6.10 86.30 0.53 2.35 16 9 N -0.68 -27.63 6.47 -513.89 -3.33 -30.95 16 10 C 0.12 5.47 5.54 86.30 0.48 5.95 16 11 C 0.02 1.06 1.65 -52.93 -0.09 0.98 16 12 C -0.50 -27.89 8.33 25.60 0.21 -27.68 16 13 H 0.05 2.78 7.82 -2.91 -0.02 2.76 16 14 C 0.02 1.35 5.43 84.65 0.46 1.81 16 15 N -0.91 -53.09 12.65 21.45 0.27 -52.82 16 16 Si 0.94 44.68 29.54 68.60 2.03 46.70 16 17 H -0.27 -12.37 7.11 99.48 0.71 -11.67 16 18 H -0.28 -12.99 7.11 99.48 0.71 -12.29 16 19 H -0.28 -13.32 7.11 99.48 0.71 -12.62 16 20 C -0.18 -8.01 9.96 30.62 0.30 -7.71 16 21 C -0.16 -7.86 9.14 30.62 0.28 -7.58 16 22 H 0.05 0.88 8.14 -2.38 -0.02 0.86 16 23 H 0.07 0.90 8.14 -2.39 -0.02 0.88 16 24 H 0.05 0.87 8.14 -2.39 -0.02 0.85 16 25 H 0.08 1.22 8.14 -2.38 -0.02 1.20 16 26 H 0.05 0.79 8.14 -2.38 -0.02 0.77 16 27 H 0.06 0.80 6.57 -2.39 -0.02 0.79 16 28 H 0.07 0.78 8.14 -2.39 -0.02 0.76 16 29 H 0.05 1.43 8.14 -2.39 -0.02 1.41 16 30 H 0.06 1.46 8.14 -2.39 -0.02 1.44 16 31 H 0.06 1.23 6.57 -2.39 -0.02 1.21 16 32 H 0.05 1.13 8.14 -2.39 -0.02 1.11 16 33 H 0.07 1.54 8.14 -2.39 -0.02 1.52 16 34 H 0.06 1.55 8.14 -2.39 -0.02 1.53 16 35 H 0.02 0.60 8.14 -2.39 -0.02 0.58 16 36 H 0.09 2.67 8.14 -2.39 -0.02 2.65 16 37 H 0.34 15.48 7.86 -89.69 -0.71 14.78 16 38 H 0.00 -0.21 8.14 -2.39 -0.02 -0.23 16 39 H 0.05 2.24 8.08 -2.38 -0.02 2.22 16 40 H 0.26 14.40 8.32 -92.71 -0.77 13.63 16 41 H 0.07 3.15 8.14 -2.39 -0.02 3.13 16 42 H 0.09 3.50 8.14 -2.39 -0.02 3.48 16 43 H 0.07 3.22 8.14 -2.39 -0.02 3.20 16 44 H 0.06 3.05 8.14 -2.38 -0.02 3.03 16 Total: -1.00 -61.50 355.84 2.19 -59.31 By element: Atomic # 1 Polarization: 26.77 SS G_CDS: 0.22 Total: 26.99 kcal Atomic # 6 Polarization: -39.34 SS G_CDS: 4.47 Total: -34.87 kcal Atomic # 7 Polarization: -80.72 SS G_CDS: -3.05 Total: -83.77 kcal Atomic # 8 Polarization: -12.89 SS G_CDS: -1.47 Total: -14.36 kcal Atomic # 14 Polarization: 44.68 SS G_CDS: 2.03 Total: 46.70 kcal Total: -61.50 2.19 -59.31 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000083854070.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -6.879 kcal (2) G-P(sol) polarization free energy of solvation -61.501 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -68.380 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.190 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.311 kcal (6) G-S(sol) free energy of system = (1) + (5) -66.190 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.41 seconds