Wall clock time and date at job start Mon Mar 30 2020 06:16:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.52998 * 109.47666 * 2 1 4 4 C 1.52999 * 109.47196 * 177.01833 * 3 2 1 5 5 C 1.53004 * 109.47000 * 186.95584 * 4 3 2 6 6 N 1.46901 * 109.47153 * 297.01859 * 3 2 1 7 7 C 1.46904 * 110.99923 * 84.92863 * 6 3 2 8 8 C 1.53004 * 109.46766 * 72.57664 * 7 6 3 9 9 O 1.42902 * 109.47245 * 63.63136 * 8 7 6 10 10 C 1.46902 * 111.00089 * 320.97948 * 6 3 2 11 11 C 1.52998 * 109.47227 * 191.07254 * 10 6 3 12 12 C 1.50702 * 115.54762 * 54.31454 * 11 10 6 13 13 H 1.08008 * 120.00141 * 214.81826 * 12 11 10 14 14 C 1.37871 * 120.00270 * 34.54248 * 12 11 10 15 15 N 1.31517 * 120.00026 * 6.03125 * 14 12 11 16 16 Si 1.86797 * 120.00266 * 186.03308 * 14 12 11 17 17 H 1.48504 * 109.47449 * 90.00242 * 16 14 12 18 18 H 1.48507 * 109.47169 * 209.99747 * 16 14 12 19 19 H 1.48493 * 109.47361 * 329.99779 * 16 14 12 20 20 C 1.52997 * 117.50102 * 199.98532 * 11 10 6 21 21 C 1.52999 * 117.50214 * 268.64725 * 11 10 6 22 22 H 1.09005 * 109.46702 * 311.05175 * 1 2 3 23 23 H 1.08997 * 109.47139 * 71.04257 * 1 2 3 24 24 H 1.08997 * 109.47154 * 191.05405 * 1 2 3 25 25 H 1.09010 * 109.46460 * 240.00119 * 2 1 3 26 26 H 1.08996 * 109.47114 * 120.00658 * 2 1 3 27 27 H 1.08995 * 109.47060 * 57.01599 * 3 2 1 28 28 H 1.08998 * 109.47241 * 306.95511 * 4 3 2 29 29 H 1.09002 * 109.47149 * 66.96228 * 4 3 2 30 30 H 1.08996 * 109.47206 * 304.79960 * 5 4 3 31 31 H 1.09003 * 109.47059 * 64.79694 * 5 4 3 32 32 H 1.08990 * 109.47242 * 184.79804 * 5 4 3 33 33 H 1.09000 * 109.47198 * 192.57011 * 7 6 3 34 34 H 1.08996 * 109.47651 * 312.58103 * 7 6 3 35 35 H 1.09001 * 109.47186 * 183.63079 * 8 7 6 36 36 H 1.09001 * 109.47122 * 303.63457 * 8 7 6 37 37 H 0.96700 * 113.99997 * 184.99067 * 9 8 7 38 38 H 1.08997 * 109.46803 * 71.07364 * 10 6 3 39 39 H 1.08993 * 109.46848 * 311.07379 * 10 6 3 40 40 H 0.96996 * 120.00667 * 184.38182 * 15 14 12 41 41 H 1.09001 * 117.49435 * 215.00299 * 20 11 10 42 42 H 1.08994 * 117.49611 * 0.02562 * 20 11 10 43 43 H 1.09004 * 117.49391 * 359.97264 * 21 11 10 44 44 H 1.08997 * 117.50305 * 144.97048 * 21 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 6 3.5683 1.4430 0.0750 5 6 4.0698 2.8779 0.2497 6 7 1.6102 2.1139 -1.2338 7 6 0.2534 2.6586 -1.0914 8 6 0.2892 3.8833 -0.1749 9 8 1.0765 4.9097 -0.7820 10 6 1.6943 1.2047 -2.3847 11 6 1.5091 2.0008 -3.6781 12 6 2.4387 3.1732 -3.8584 13 1 2.0899 4.0679 -4.3529 14 6 3.7326 3.1060 -3.3871 15 7 4.1927 1.9799 -2.8872 16 14 4.8321 4.6144 -3.4583 17 1 4.6803 5.3973 -2.2056 18 1 6.2471 4.1889 -3.6075 19 1 4.4434 5.4561 -4.6182 20 6 1.0977 1.2261 -4.9317 21 6 0.0875 2.1354 -4.2275 22 1 -0.3633 0.6750 0.7750 23 1 -0.3633 0.3338 -0.9719 24 1 -0.3633 -1.0086 0.1970 25 1 1.8933 -0.5139 -0.8901 26 1 1.8933 -0.5139 0.8899 27 1 1.6338 1.9715 0.8620 28 1 3.8906 0.8396 0.9236 29 1 3.9774 1.0246 -0.8446 30 1 3.6767 3.5005 -0.5540 31 1 3.7307 3.2670 1.2098 32 1 5.1592 2.8884 0.2177 33 1 -0.1262 2.9490 -2.0710 34 1 -0.3992 1.9002 -0.6590 35 1 -0.7255 4.2490 -0.0173 36 1 0.7289 3.6071 0.7835 37 1 1.2064 5.6882 -0.2231 38 1 0.9128 0.4488 -2.3083 39 1 2.6700 0.7191 -2.3935 40 1 5.0805 1.9490 -2.4978 41 1 1.4994 1.5646 -5.8868 42 1 0.9586 0.1495 -4.8348 43 1 -0.7158 1.6564 -3.6676 44 1 -0.1756 3.0720 -4.7189 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000083855164.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:16:29 Heat of formation + Delta-G solvation = -7.932839 kcal Electronic energy + Delta-G solvation = -21906.912950 eV Core-core repulsion = 19053.924511 eV Total energy + Delta-G solvation = -2852.988438 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 255.194 amu Computer time = 0.42 seconds Orbital eigenvalues (eV) -38.86542 -36.02896 -35.62300 -32.27256 -31.68269 -31.11860 -28.52267 -26.02014 -25.22075 -23.90490 -21.49613 -21.33179 -20.65747 -19.22280 -18.45552 -16.74578 -16.19487 -14.95180 -14.78490 -14.51311 -14.23085 -13.60853 -13.54393 -13.10492 -12.66809 -12.47763 -12.19873 -12.11853 -11.79208 -11.58089 -11.18077 -11.10656 -10.85245 -10.69946 -10.54410 -10.36471 -10.34644 -10.19918 -9.97877 -9.83353 -9.78269 -9.58361 -9.23655 -9.02921 -8.70232 -8.40185 -7.81480 -6.77781 -5.69563 -3.69559 3.49322 3.54228 3.59098 4.66349 4.84951 5.02628 5.29883 5.35496 5.51581 5.59069 5.73878 5.79444 5.90637 5.99642 6.02662 6.08011 6.15103 6.24218 6.27081 6.29416 6.36133 6.45561 6.54736 6.60362 6.63020 6.76490 6.79661 6.80616 6.83805 6.92269 7.00978 7.06432 7.36395 7.43741 7.46669 7.55218 7.81607 8.23802 8.33411 8.47950 8.50373 8.76720 9.21058 9.89300 11.30964 Molecular weight = 255.19amu Principal moments of inertia in cm(-1) A = 0.016146 B = 0.011652 C = 0.009995 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1733.739068 B = 2402.363571 C = 2800.591408 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.155 4.155 2 C -0.157 4.157 3 C 0.089 3.911 4 C -0.111 4.111 5 C -0.134 4.134 6 N -0.470 5.470 7 C 0.029 3.971 8 C 0.087 3.913 9 O -0.536 6.536 10 C 0.102 3.898 11 C 0.073 3.927 12 C -0.457 4.457 13 H 0.048 0.952 14 C 0.097 3.903 15 N -0.873 5.873 16 Si 0.883 3.117 17 H -0.278 1.278 18 H -0.295 1.295 19 H -0.283 1.283 20 C -0.212 4.212 21 C -0.221 4.221 22 H 0.048 0.952 23 H 0.065 0.935 24 H 0.043 0.957 25 H 0.072 0.928 26 H 0.051 0.949 27 H 0.056 0.944 28 H 0.031 0.969 29 H 0.099 0.901 30 H 0.087 0.913 31 H 0.022 0.978 32 H 0.030 0.970 33 H 0.089 0.911 34 H 0.045 0.955 35 H 0.026 0.974 36 H 0.031 0.969 37 H 0.356 0.644 38 H -0.014 1.014 39 H 0.120 0.880 40 H 0.254 0.746 41 H 0.074 0.926 42 H 0.059 0.941 43 H 0.059 0.941 44 H 0.071 0.929 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.248 -1.285 7.900 9.571 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.212 4.212 2 C -0.196 4.196 3 C -0.020 4.020 4 C -0.149 4.149 5 C -0.191 4.191 6 N -0.192 5.192 7 C -0.099 4.099 8 C 0.009 3.991 9 O -0.337 6.337 10 C -0.024 4.024 11 C 0.072 3.928 12 C -0.494 4.494 13 H 0.066 0.934 14 C -0.105 4.105 15 N -0.511 5.511 16 Si 0.712 3.288 17 H -0.204 1.204 18 H -0.221 1.221 19 H -0.208 1.208 20 C -0.251 4.251 21 C -0.258 4.258 22 H 0.067 0.933 23 H 0.083 0.917 24 H 0.062 0.938 25 H 0.091 0.909 26 H 0.070 0.930 27 H 0.074 0.926 28 H 0.050 0.950 29 H 0.118 0.882 30 H 0.106 0.894 31 H 0.041 0.959 32 H 0.049 0.951 33 H 0.108 0.892 34 H 0.062 0.938 35 H 0.044 0.956 36 H 0.049 0.951 37 H 0.199 0.801 38 H 0.004 0.996 39 H 0.138 0.862 40 H 0.064 0.936 41 H 0.093 0.907 42 H 0.078 0.922 43 H 0.078 0.922 44 H 0.089 0.911 Dipole moment (debyes) X Y Z Total from point charges -4.714 -1.414 7.342 8.839 hybrid contribution -0.197 0.552 0.731 0.937 sum -4.911 -0.861 8.073 9.488 Atomic orbital electron populations 1.22087 0.96987 1.00360 1.01799 1.22303 0.95279 1.00004 1.02013 1.21724 0.96147 0.90751 0.93393 1.21549 0.94442 0.96996 1.01911 1.21587 0.98575 0.98197 1.00762 1.61802 1.20790 1.35411 1.01196 1.22630 0.92204 0.94019 1.01071 1.22171 0.92090 0.89504 0.95370 1.86884 1.74135 1.28575 1.44141 1.21869 1.01060 0.91238 0.88267 1.19008 0.89341 0.95529 0.88945 1.20178 0.94519 0.98031 1.36694 0.93359 1.24536 0.96979 0.94672 0.94340 1.69739 1.17235 1.24264 1.39871 0.86782 0.79404 0.84377 0.78229 1.20445 1.22141 1.20833 1.22989 1.06658 0.95044 1.00367 1.22923 0.94891 1.00419 1.07582 0.93260 0.91673 0.93786 0.90910 0.92999 0.92609 0.95029 0.88245 0.89436 0.95902 0.95133 0.89246 0.93758 0.95569 0.95086 0.80100 0.99597 0.86235 0.93562 0.90706 0.92243 0.92210 0.91090 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.28 8.05 37.16 0.30 -1.98 16 2 C -0.16 -2.55 4.88 -26.73 -0.13 -2.68 16 3 C 0.09 1.61 1.78 -67.71 -0.12 1.49 16 4 C -0.11 -2.11 5.32 -26.73 -0.14 -2.25 16 5 C -0.13 -2.63 9.86 37.16 0.37 -2.26 16 6 N -0.47 -9.55 3.26 -226.65 -0.74 -10.29 16 7 C 0.03 0.54 4.74 -3.82 -0.02 0.52 16 8 C 0.09 1.46 7.18 37.16 0.27 1.73 16 9 O -0.54 -10.18 13.59 -35.23 -0.48 -10.66 16 10 C 0.10 2.28 2.44 -3.82 -0.01 2.27 16 11 C 0.07 1.76 1.52 -155.66 -0.24 1.52 16 12 C -0.46 -12.37 8.75 -34.44 -0.30 -12.67 16 13 H 0.05 1.38 7.82 -52.48 -0.41 0.97 16 14 C 0.10 2.56 5.03 -17.82 -0.09 2.47 16 15 N -0.87 -22.56 8.70 55.43 0.48 -22.08 16 16 Si 0.88 21.69 29.54 -169.99 -5.02 16.66 16 17 H -0.28 -6.87 7.11 56.52 0.40 -6.47 16 18 H -0.29 -7.25 7.11 56.52 0.40 -6.84 16 19 H -0.28 -7.07 7.11 56.52 0.40 -6.67 16 20 C -0.21 -4.86 9.96 -26.70 -0.27 -5.13 16 21 C -0.22 -4.88 8.12 -26.69 -0.22 -5.09 16 22 H 0.05 0.67 7.55 -51.93 -0.39 0.28 16 23 H 0.06 1.05 4.71 -51.93 -0.24 0.80 16 24 H 0.04 0.57 8.14 -51.93 -0.42 0.15 16 25 H 0.07 1.30 6.22 -51.92 -0.32 0.98 16 26 H 0.05 0.77 8.14 -51.93 -0.42 0.34 16 27 H 0.06 0.97 6.20 -51.93 -0.32 0.65 16 28 H 0.03 0.53 8.14 -51.93 -0.42 0.11 16 29 H 0.10 2.14 5.01 -51.93 -0.26 1.88 16 30 H 0.09 2.02 7.52 -51.93 -0.39 1.63 16 31 H 0.02 0.39 8.14 -51.93 -0.42 -0.03 16 32 H 0.03 0.57 8.14 -51.93 -0.42 0.15 16 33 H 0.09 1.88 5.17 -51.93 -0.27 1.61 16 34 H 0.04 0.75 3.87 -51.93 -0.20 0.55 16 35 H 0.03 0.38 8.14 -51.93 -0.42 -0.04 16 36 H 0.03 0.49 6.51 -51.93 -0.34 0.15 16 37 H 0.36 4.99 9.12 45.56 0.42 5.41 16 38 H -0.01 -0.29 5.31 -51.93 -0.28 -0.57 16 39 H 0.12 2.94 4.53 -51.93 -0.24 2.71 16 40 H 0.25 6.46 8.10 -40.82 -0.33 6.12 16 41 H 0.07 1.75 8.14 -51.93 -0.42 1.33 16 42 H 0.06 1.28 8.14 -51.93 -0.42 0.86 16 43 H 0.06 1.22 7.89 -51.93 -0.41 0.81 16 44 H 0.07 1.59 8.14 -51.93 -0.42 1.17 16 LS Contribution 322.87 15.07 4.87 4.87 Total: -1.00 -27.45 322.87 -8.08 -35.52 By element: Atomic # 1 Polarization: 14.63 SS G_CDS: -6.59 Total: 8.04 kcal Atomic # 6 Polarization: -21.47 SS G_CDS: -0.60 Total: -22.07 kcal Atomic # 7 Polarization: -32.11 SS G_CDS: -0.26 Total: -32.36 kcal Atomic # 8 Polarization: -10.18 SS G_CDS: -0.48 Total: -10.66 kcal Atomic # 14 Polarization: 21.69 SS G_CDS: -5.02 Total: 16.66 kcal Total LS contribution 4.87 Total: 4.87 kcal Total: -27.45 -8.08 -35.52 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000083855164.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 27.589 kcal (2) G-P(sol) polarization free energy of solvation -27.445 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 0.143 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.076 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.522 kcal (6) G-S(sol) free energy of system = (1) + (5) -7.933 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds