Wall clock time and date at job start Mon Mar 30 2020 06:16:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.52998 * 109.47666 * 2 1 4 4 C 1.52999 * 109.47196 * 177.01833 * 3 2 1 5 5 C 1.53004 * 109.47000 * 186.95584 * 4 3 2 6 6 N 1.46901 * 109.47153 * 297.01859 * 3 2 1 7 7 C 1.46904 * 110.99923 * 84.92863 * 6 3 2 8 8 C 1.53004 * 109.46766 * 72.57664 * 7 6 3 9 9 O 1.42902 * 109.47245 * 63.63136 * 8 7 6 10 10 C 1.46902 * 111.00089 * 320.97948 * 6 3 2 11 11 C 1.52998 * 109.47227 * 191.07254 * 10 6 3 12 12 C 1.50702 * 115.54762 * 54.31454 * 11 10 6 13 13 H 1.08008 * 120.00141 * 214.81826 * 12 11 10 14 14 C 1.37871 * 120.00270 * 34.54248 * 12 11 10 15 15 N 1.31517 * 120.00026 * 6.03125 * 14 12 11 16 16 Si 1.86797 * 120.00266 * 186.03308 * 14 12 11 17 17 H 1.48504 * 109.47449 * 90.00242 * 16 14 12 18 18 H 1.48507 * 109.47169 * 209.99747 * 16 14 12 19 19 H 1.48493 * 109.47361 * 329.99779 * 16 14 12 20 20 C 1.52997 * 117.50102 * 199.98532 * 11 10 6 21 21 C 1.52999 * 117.50214 * 268.64725 * 11 10 6 22 22 H 1.09005 * 109.46702 * 311.05175 * 1 2 3 23 23 H 1.08997 * 109.47139 * 71.04257 * 1 2 3 24 24 H 1.08997 * 109.47154 * 191.05405 * 1 2 3 25 25 H 1.09010 * 109.46460 * 240.00119 * 2 1 3 26 26 H 1.08996 * 109.47114 * 120.00658 * 2 1 3 27 27 H 1.08995 * 109.47060 * 57.01599 * 3 2 1 28 28 H 1.08998 * 109.47241 * 306.95511 * 4 3 2 29 29 H 1.09002 * 109.47149 * 66.96228 * 4 3 2 30 30 H 1.08996 * 109.47206 * 304.79960 * 5 4 3 31 31 H 1.09003 * 109.47059 * 64.79694 * 5 4 3 32 32 H 1.08990 * 109.47242 * 184.79804 * 5 4 3 33 33 H 1.09000 * 109.47198 * 192.57011 * 7 6 3 34 34 H 1.08996 * 109.47651 * 312.58103 * 7 6 3 35 35 H 1.09001 * 109.47186 * 183.63079 * 8 7 6 36 36 H 1.09001 * 109.47122 * 303.63457 * 8 7 6 37 37 H 0.96700 * 113.99997 * 184.99067 * 9 8 7 38 38 H 1.08997 * 109.46803 * 71.07364 * 10 6 3 39 39 H 1.08993 * 109.46848 * 311.07379 * 10 6 3 40 40 H 0.96996 * 120.00667 * 184.38182 * 15 14 12 41 41 H 1.09001 * 117.49435 * 215.00299 * 20 11 10 42 42 H 1.08994 * 117.49611 * 0.02562 * 20 11 10 43 43 H 1.09004 * 117.49391 * 359.97264 * 21 11 10 44 44 H 1.08997 * 117.50305 * 144.97048 * 21 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 6 3.5683 1.4430 0.0750 5 6 4.0698 2.8779 0.2497 6 7 1.6102 2.1139 -1.2338 7 6 0.2534 2.6586 -1.0914 8 6 0.2892 3.8833 -0.1749 9 8 1.0765 4.9097 -0.7820 10 6 1.6943 1.2047 -2.3847 11 6 1.5091 2.0008 -3.6781 12 6 2.4387 3.1732 -3.8584 13 1 2.0899 4.0679 -4.3529 14 6 3.7326 3.1060 -3.3871 15 7 4.1927 1.9799 -2.8872 16 14 4.8321 4.6144 -3.4583 17 1 4.6803 5.3973 -2.2056 18 1 6.2471 4.1889 -3.6075 19 1 4.4434 5.4561 -4.6182 20 6 1.0977 1.2261 -4.9317 21 6 0.0875 2.1354 -4.2275 22 1 -0.3633 0.6750 0.7750 23 1 -0.3633 0.3338 -0.9719 24 1 -0.3633 -1.0086 0.1970 25 1 1.8933 -0.5139 -0.8901 26 1 1.8933 -0.5139 0.8899 27 1 1.6338 1.9715 0.8620 28 1 3.8906 0.8396 0.9236 29 1 3.9774 1.0246 -0.8446 30 1 3.6767 3.5005 -0.5540 31 1 3.7307 3.2670 1.2098 32 1 5.1592 2.8884 0.2177 33 1 -0.1262 2.9490 -2.0710 34 1 -0.3992 1.9002 -0.6590 35 1 -0.7255 4.2490 -0.0173 36 1 0.7289 3.6071 0.7835 37 1 1.2064 5.6882 -0.2231 38 1 0.9128 0.4488 -2.3083 39 1 2.6700 0.7191 -2.3935 40 1 5.0805 1.9490 -2.4978 41 1 1.4994 1.5646 -5.8868 42 1 0.9586 0.1495 -4.8348 43 1 -0.7158 1.6564 -3.6676 44 1 -0.1756 3.0720 -4.7189 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000083855164.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:16:28 Heat of formation + Delta-G solvation = -24.790344 kcal Electronic energy + Delta-G solvation = -21907.643946 eV Core-core repulsion = 19053.924511 eV Total energy + Delta-G solvation = -2853.719435 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 255.194 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -40.38264 -37.70825 -37.07353 -34.08062 -33.37318 -32.47661 -30.00997 -27.56195 -27.17026 -25.44417 -23.15686 -22.72939 -22.18636 -20.95026 -20.09367 -18.26712 -17.83518 -16.58538 -16.50744 -16.10399 -15.80306 -15.37321 -14.98125 -14.58057 -14.37096 -14.00230 -13.60436 -13.58332 -13.22060 -13.02626 -13.01669 -12.79459 -12.68117 -12.33285 -12.24203 -12.13666 -11.91415 -11.71892 -11.56743 -11.41709 -11.35769 -11.16994 -10.87745 -10.61086 -10.52491 -10.24299 -9.75350 -8.27182 -7.70643 -5.76260 1.47957 1.52672 1.56891 2.63722 3.22773 3.53003 3.76975 3.87445 4.03336 4.26750 4.30398 4.41403 4.48833 4.62859 4.64795 4.69758 4.70812 4.75486 4.80256 4.86237 4.90145 4.94757 4.97566 5.05268 5.13505 5.18860 5.22229 5.29733 5.30935 5.35289 5.46711 5.49371 5.58477 5.66776 5.79960 5.92604 5.96684 6.28323 6.65272 6.91696 6.99233 7.18339 7.24930 7.82361 9.24853 Molecular weight = 255.19amu Principal moments of inertia in cm(-1) A = 0.016146 B = 0.011652 C = 0.009995 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1733.739068 B = 2402.363571 C = 2800.591408 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C -0.152 4.152 3 C 0.090 3.910 4 C -0.109 4.109 5 C -0.125 4.125 6 N -0.486 5.486 7 C 0.026 3.974 8 C 0.089 3.911 9 O -0.571 6.571 10 C 0.121 3.879 11 C 0.049 3.951 12 C -0.478 4.478 13 H 0.021 0.979 14 C 0.077 3.923 15 N -0.868 5.868 16 Si 0.917 3.083 17 H -0.280 1.280 18 H -0.292 1.292 19 H -0.292 1.292 20 C -0.214 4.214 21 C -0.200 4.200 22 H 0.063 0.937 23 H 0.048 0.952 24 H 0.061 0.939 25 H 0.051 0.949 26 H 0.070 0.930 27 H 0.069 0.931 28 H 0.054 0.946 29 H 0.071 0.929 30 H 0.051 0.949 31 H 0.042 0.958 32 H 0.027 0.973 33 H 0.062 0.938 34 H 0.067 0.933 35 H 0.053 0.947 36 H 0.044 0.956 37 H 0.374 0.626 38 H -0.006 1.006 39 H 0.094 0.906 40 H 0.253 0.747 41 H 0.063 0.937 42 H 0.074 0.926 43 H 0.080 0.920 44 H 0.062 0.938 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.186 -1.923 9.859 11.796 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.191 4.191 3 C -0.019 4.019 4 C -0.147 4.147 5 C -0.183 4.183 6 N -0.208 5.208 7 C -0.102 4.102 8 C 0.011 3.989 9 O -0.375 6.375 10 C -0.006 4.006 11 C 0.048 3.952 12 C -0.515 4.515 13 H 0.039 0.961 14 C -0.125 4.125 15 N -0.505 5.505 16 Si 0.747 3.253 17 H -0.206 1.206 18 H -0.218 1.218 19 H -0.218 1.218 20 C -0.252 4.252 21 C -0.237 4.237 22 H 0.082 0.918 23 H 0.067 0.933 24 H 0.080 0.920 25 H 0.070 0.930 26 H 0.089 0.911 27 H 0.087 0.913 28 H 0.072 0.928 29 H 0.089 0.911 30 H 0.070 0.930 31 H 0.062 0.938 32 H 0.046 0.954 33 H 0.080 0.920 34 H 0.085 0.915 35 H 0.071 0.929 36 H 0.062 0.938 37 H 0.221 0.779 38 H 0.012 0.988 39 H 0.112 0.888 40 H 0.063 0.937 41 H 0.081 0.919 42 H 0.092 0.908 43 H 0.099 0.901 44 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges -5.652 -2.048 9.312 11.084 hybrid contribution 0.108 0.777 0.126 0.794 sum -5.544 -1.272 9.438 11.020 Atomic orbital electron populations 1.22011 0.95538 1.01849 1.01308 1.22210 0.96499 0.98497 1.01875 1.21738 0.95458 0.91991 0.92725 1.21505 0.95261 0.96571 1.01382 1.21463 0.98299 0.98135 1.00387 1.61686 1.22137 1.35490 1.01485 1.22687 0.91641 0.95472 1.00400 1.22228 0.93368 0.88383 0.94963 1.86827 1.74802 1.29993 1.45898 1.21501 0.99735 0.91134 0.88276 1.19124 0.90222 0.95456 0.90362 1.20179 0.95611 0.98212 1.37497 0.96113 1.24815 0.97402 0.95922 0.94378 1.69841 1.17055 1.24304 1.39344 0.86258 0.78623 0.82891 0.77543 1.20580 1.21807 1.21805 1.22982 1.06937 0.95922 0.99408 1.22836 0.94508 0.99823 1.06557 0.91830 0.93303 0.91992 0.93033 0.91130 0.91264 0.92755 0.91086 0.93025 0.93845 0.95352 0.91955 0.91514 0.92927 0.93814 0.77936 0.98829 0.88814 0.93693 0.91881 0.90793 0.90143 0.91967 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.90 8.05 71.98 0.58 -3.32 16 2 C -0.15 -4.54 4.88 30.59 0.15 -4.39 16 3 C 0.09 3.05 1.78 44.91 0.08 3.13 16 4 C -0.11 -3.97 5.32 30.60 0.16 -3.81 16 5 C -0.13 -4.76 9.86 71.98 0.71 -4.05 16 6 N -0.49 -19.22 3.26 -870.99 -2.84 -22.06 16 7 C 0.03 0.92 4.74 86.30 0.41 1.33 16 8 C 0.09 2.76 7.18 71.98 0.52 3.27 16 9 O -0.57 -21.10 13.59 -148.98 -2.02 -23.12 16 10 C 0.12 5.34 2.44 86.30 0.21 5.55 16 11 C 0.05 2.39 1.52 -52.93 -0.08 2.31 16 12 C -0.48 -26.42 8.75 25.60 0.22 -26.20 16 13 H 0.02 1.22 7.82 -2.91 -0.02 1.20 16 14 C 0.08 4.12 5.03 84.65 0.43 4.55 16 15 N -0.87 -45.32 8.70 21.45 0.19 -45.14 16 16 Si 0.92 45.06 29.54 68.60 2.03 47.09 16 17 H -0.28 -13.71 7.11 99.48 0.71 -13.01 16 18 H -0.29 -14.08 7.11 99.48 0.71 -13.37 16 19 H -0.29 -14.66 7.11 99.48 0.71 -13.96 16 20 C -0.21 -9.79 9.96 30.62 0.30 -9.49 16 21 C -0.20 -8.75 8.12 30.62 0.25 -8.50 16 22 H 0.06 1.47 7.55 -2.38 -0.02 1.45 16 23 H 0.05 1.43 4.71 -2.39 -0.01 1.42 16 24 H 0.06 1.39 8.14 -2.39 -0.02 1.37 16 25 H 0.05 1.77 6.22 -2.38 -0.01 1.75 16 26 H 0.07 1.84 8.14 -2.39 -0.02 1.82 16 27 H 0.07 2.17 6.20 -2.39 -0.01 2.16 16 28 H 0.05 1.70 8.14 -2.39 -0.02 1.68 16 29 H 0.07 3.03 5.01 -2.39 -0.01 3.02 16 30 H 0.05 2.35 7.52 -2.39 -0.02 2.33 16 31 H 0.04 1.42 8.14 -2.39 -0.02 1.40 16 32 H 0.03 1.04 8.14 -2.39 -0.02 1.02 16 33 H 0.06 2.56 5.17 -2.39 -0.01 2.55 16 34 H 0.07 2.06 3.87 -2.39 -0.01 2.05 16 35 H 0.05 1.36 8.14 -2.39 -0.02 1.34 16 36 H 0.04 1.24 6.51 -2.39 -0.02 1.22 16 37 H 0.37 10.05 9.12 -74.06 -0.68 9.38 16 38 H -0.01 -0.25 5.31 -2.39 -0.01 -0.26 16 39 H 0.09 4.65 4.53 -2.39 -0.01 4.64 16 40 H 0.25 12.96 8.10 -92.71 -0.75 12.21 16 41 H 0.06 2.99 8.14 -2.39 -0.02 2.97 16 42 H 0.07 3.13 8.14 -2.39 -0.02 3.11 16 43 H 0.08 3.16 7.89 -2.38 -0.02 3.14 16 44 H 0.06 2.80 8.14 -2.39 -0.02 2.78 16 Total: -1.00 -59.05 322.87 1.62 -57.43 By element: Atomic # 1 Polarization: 25.09 SS G_CDS: 0.33 Total: 25.42 kcal Atomic # 6 Polarization: -43.56 SS G_CDS: 3.94 Total: -39.62 kcal Atomic # 7 Polarization: -64.55 SS G_CDS: -2.65 Total: -67.19 kcal Atomic # 8 Polarization: -21.10 SS G_CDS: -2.02 Total: -23.12 kcal Atomic # 14 Polarization: 45.06 SS G_CDS: 2.03 Total: 47.09 kcal Total: -59.05 1.62 -57.43 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000083855164.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 32.639 kcal (2) G-P(sol) polarization free energy of solvation -59.052 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -26.413 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.623 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -57.429 kcal (6) G-S(sol) free energy of system = (1) + (5) -24.790 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds