Wall clock time and date at job start Mon Mar 30 2020 06:36:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.53000 * 109.47083 * 2 1 4 4 C 1.53002 * 109.47083 * 179.97438 * 3 2 1 5 5 H 1.09002 * 109.48876 * 304.97041 * 4 3 2 6 6 C 1.53098 * 109.48593 * 185.02989 * 4 3 2 7 7 C 1.53175 * 109.16209 * 182.49481 * 6 4 3 8 8 H 1.08997 * 109.54379 * 296.94050 * 7 6 4 9 9 N 1.46902 * 109.54740 * 176.76012 * 7 6 4 10 10 C 1.46893 * 111.00110 * 155.17808 * 9 7 6 11 11 C 1.53001 * 109.47061 * 179.97438 * 10 9 7 12 12 C 1.53000 * 109.46872 * 180.02562 * 11 10 9 13 13 C 1.50708 * 109.46973 * 180.02562 * 12 11 10 14 14 H 1.07991 * 119.99789 * 0.02562 * 13 12 11 15 15 C 1.37877 * 120.00008 * 179.97438 * 13 12 11 16 16 N 1.31514 * 120.00089 * 180.02562 * 15 13 12 17 17 Si 1.86798 * 119.99938 * 0.02562 * 15 13 12 18 18 H 1.48506 * 109.47297 * 269.99556 * 17 15 13 19 19 H 1.48503 * 109.47261 * 149.99737 * 17 15 13 20 20 H 1.48500 * 109.47454 * 29.99730 * 17 15 13 21 21 C 1.53186 * 109.10644 * 56.84779 * 7 6 4 22 22 C 1.53092 * 109.16306 * 303.06748 * 21 7 6 23 23 O 1.42896 * 109.41636 * 57.60626 * 22 21 7 24 24 H 1.09000 * 109.46790 * 60.00196 * 1 2 3 25 25 H 1.08999 * 109.46742 * 180.02562 * 1 2 3 26 26 H 1.08997 * 109.46870 * 299.99961 * 1 2 3 27 27 H 1.09004 * 109.47414 * 239.99664 * 2 1 3 28 28 H 1.09003 * 109.47256 * 119.99644 * 2 1 3 29 29 H 1.08997 * 109.47236 * 60.00263 * 3 2 1 30 30 H 1.09000 * 109.47148 * 299.99585 * 3 2 1 31 31 H 1.09000 * 109.59785 * 62.54723 * 6 4 3 32 32 H 1.09004 * 109.45301 * 302.35850 * 6 4 3 33 33 H 1.00905 * 110.99227 * 279.13371 * 9 7 6 34 34 H 1.09007 * 109.47355 * 60.00194 * 10 9 7 35 35 H 1.09000 * 109.47422 * 300.00155 * 10 9 7 36 36 H 1.08996 * 109.46845 * 60.00446 * 11 10 9 37 37 H 1.08996 * 109.47077 * 299.99617 * 11 10 9 38 38 H 1.08994 * 109.48028 * 60.00123 * 12 11 10 39 39 H 1.09000 * 109.47206 * 299.99977 * 12 11 10 40 40 H 0.96997 * 119.99848 * 180.02562 * 16 15 13 41 41 H 1.08997 * 109.51858 * 62.97225 * 21 7 6 42 42 H 1.09001 * 109.52132 * 183.09831 * 21 7 6 43 43 H 1.09001 * 109.47649 * 177.59241 * 22 21 7 44 44 H 1.09001 * 109.47781 * 297.62414 * 22 21 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 3.5700 1.4425 0.0006 5 1 3.9333 0.8537 0.8429 6 6 4.0807 2.8803 0.1272 7 6 5.6111 2.8776 0.0644 8 1 6.0099 2.3207 0.9122 9 7 6.1072 4.2597 0.1071 10 6 7.4790 4.3107 0.6300 11 6 7.9601 5.7628 0.6587 12 6 9.3891 5.8158 1.2028 13 6 9.8629 7.2462 1.2317 14 1 9.2099 8.0381 0.8961 15 6 11.1296 7.5438 1.6877 16 7 11.5428 8.7921 1.7134 17 14 12.2588 6.1740 2.2689 18 1 12.0575 5.9500 3.7231 19 1 13.6715 6.5571 2.0181 20 1 11.9453 4.9260 1.5278 21 6 6.0582 2.2128 -1.2413 22 6 5.4713 0.8007 -1.3128 23 8 4.0472 0.8729 -1.2201 24 1 -0.3633 0.5138 -0.8900 25 1 -0.3633 -1.0277 0.0005 26 1 -0.3633 0.5138 0.8900 27 1 1.8934 -0.5139 -0.8900 28 1 1.8934 -0.5138 0.8900 29 1 1.6767 1.9563 0.8900 30 1 1.6767 1.9563 -0.8900 31 1 3.7560 3.3011 1.0788 32 1 3.6835 3.4800 -0.6918 33 1 6.0506 4.6923 -0.8027 34 1 8.1350 3.7236 -0.0128 35 1 7.4984 3.9011 1.6399 36 1 7.3043 6.3501 1.3013 37 1 7.9409 6.1720 -0.3513 38 1 10.0448 5.2286 0.5600 39 1 9.4088 5.4065 2.2128 40 1 12.4341 9.0014 2.0338 41 1 5.7023 2.7986 -2.0887 42 1 7.1465 2.1577 -1.2679 43 1 5.7510 0.3384 -2.2595 44 1 5.8595 0.2035 -0.4877 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000134652856.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:36:10 Heat of formation + Delta-G solvation = -85.949210 kcal Electronic energy + Delta-G solvation = -18962.786771 eV Core-core repulsion = 16106.415289 eV Total energy + Delta-G solvation = -2856.371482 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 255.194 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -39.86968 -36.73671 -35.17266 -33.98705 -32.22782 -31.43843 -30.27584 -27.43917 -26.17890 -23.69089 -22.89720 -21.97241 -21.08646 -20.64752 -19.81568 -16.75422 -16.72153 -16.25397 -15.44475 -15.03034 -14.92134 -14.66106 -14.16586 -14.15002 -13.93230 -13.26075 -13.20258 -12.89316 -12.54332 -12.39398 -12.06532 -11.78146 -11.69090 -11.56653 -11.33270 -11.19177 -11.07302 -10.88777 -10.86205 -10.75162 -10.39494 -9.97513 -9.82582 -9.70527 -9.45298 -9.16402 -8.52916 -8.22972 -6.03137 -4.00868 3.30697 3.37816 3.41300 3.57687 4.11467 4.45764 4.57595 4.59668 4.70266 4.79049 4.90384 4.91082 5.03136 5.10419 5.22582 5.30618 5.39432 5.41195 5.41986 5.49874 5.59656 5.63559 5.68619 5.69971 5.77536 5.79433 5.90260 5.98578 6.02557 6.09220 6.14018 6.16629 6.55636 6.57495 6.91753 7.06719 7.20866 7.34556 7.43977 7.55616 7.81251 8.56138 9.02465 9.59417 11.10451 Molecular weight = 255.19amu Principal moments of inertia in cm(-1) A = 0.046948 B = 0.003028 C = 0.002958 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 596.258644 B = 9244.769119 C = 9462.984085 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C -0.123 4.123 3 C -0.111 4.111 4 C 0.090 3.910 5 H 0.056 0.944 6 C -0.136 4.136 7 C 0.085 3.915 8 H 0.075 0.925 9 N -0.684 5.684 10 C 0.057 3.943 11 C -0.100 4.100 12 C -0.013 4.013 13 C -0.519 4.519 14 H 0.072 0.928 15 C 0.064 3.936 16 N -0.904 5.904 17 Si 0.881 3.119 18 H -0.277 1.277 19 H -0.288 1.288 20 H -0.267 1.267 21 C -0.187 4.187 22 C 0.067 3.933 23 O -0.379 6.379 24 H 0.053 0.947 25 H 0.052 0.948 26 H 0.052 0.948 27 H 0.068 0.932 28 H 0.058 0.942 29 H 0.076 0.924 30 H 0.071 0.929 31 H 0.079 0.921 32 H 0.071 0.929 33 H 0.340 0.660 34 H 0.024 0.976 35 H 0.066 0.934 36 H 0.062 0.938 37 H 0.051 0.949 38 H 0.013 0.987 39 H 0.011 0.989 40 H 0.262 0.738 41 H 0.073 0.927 42 H 0.072 0.928 43 H 0.091 0.909 44 H 0.048 0.952 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.223 -19.082 -4.655 26.793 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.160 4.160 3 C -0.148 4.148 4 C 0.032 3.968 5 H 0.074 0.926 6 C -0.174 4.174 7 C -0.025 4.025 8 H 0.093 0.907 9 N -0.313 5.313 10 C -0.072 4.072 11 C -0.138 4.138 12 C -0.051 4.051 13 C -0.557 4.557 14 H 0.090 0.910 15 C -0.137 4.137 16 N -0.544 5.544 17 Si 0.709 3.291 18 H -0.203 1.203 19 H -0.214 1.214 20 H -0.191 1.191 21 C -0.226 4.226 22 C -0.010 4.010 23 O -0.298 6.298 24 H 0.073 0.927 25 H 0.071 0.929 26 H 0.071 0.929 27 H 0.087 0.913 28 H 0.077 0.923 29 H 0.095 0.905 30 H 0.089 0.911 31 H 0.097 0.903 32 H 0.090 0.910 33 H 0.158 0.842 34 H 0.042 0.958 35 H 0.084 0.916 36 H 0.080 0.920 37 H 0.070 0.930 38 H 0.031 0.969 39 H 0.029 0.971 40 H 0.072 0.928 41 H 0.091 0.909 42 H 0.091 0.909 43 H 0.109 0.891 44 H 0.066 0.934 Dipole moment (debyes) X Y Z Total from point charges -18.474 -18.872 -4.129 26.730 hybrid contribution 1.567 -0.789 -0.226 1.769 sum -16.907 -19.661 -4.355 26.294 Atomic orbital electron populations 1.21783 0.96013 1.01481 1.01739 1.21488 0.95519 0.96667 1.02351 1.21633 0.92673 0.97605 1.02894 1.22173 0.94563 0.93183 0.86900 0.92631 1.22209 0.95161 0.96543 1.03534 1.21603 0.94949 0.89795 0.96162 0.90692 1.60617 1.23836 1.15584 1.31283 1.22181 0.86759 0.99221 0.99039 1.21444 0.98337 0.92894 1.01084 1.19542 0.92135 0.97888 0.95499 1.21153 0.99915 0.91788 1.42815 0.91023 1.25051 0.97982 0.95339 0.95282 1.69919 1.18994 1.17737 1.47707 0.86759 0.79938 0.83001 0.79437 1.20303 1.21422 1.19135 1.22968 1.01584 0.98125 0.99966 1.22460 0.81083 0.95620 1.01852 1.87904 1.20751 1.82368 1.38801 0.92742 0.92900 0.92851 0.91300 0.92335 0.90538 0.91073 0.90256 0.91029 0.84180 0.95807 0.91592 0.91953 0.93040 0.96896 0.97095 0.92777 0.90860 0.90888 0.89065 0.93357 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.02 9.91 37.16 0.37 -0.65 16 2 C -0.12 -0.95 5.83 -26.73 -0.16 -1.10 16 3 C -0.11 -0.91 4.92 -26.73 -0.13 -1.04 16 4 C 0.09 0.86 2.64 -26.68 -0.07 0.79 16 5 H 0.06 0.52 8.14 -51.93 -0.42 0.10 16 6 C -0.14 -1.43 5.04 -26.59 -0.13 -1.56 16 7 C 0.09 1.00 2.55 -67.53 -0.17 0.82 16 8 H 0.07 0.91 7.80 -51.93 -0.41 0.50 16 9 N -0.68 -9.52 6.26 -106.53 -0.67 -10.19 16 10 C 0.06 0.92 5.49 -3.83 -0.02 0.90 16 11 C -0.10 -1.99 5.41 -26.73 -0.14 -2.14 16 12 C -0.01 -0.31 4.04 -27.88 -0.11 -0.42 16 13 C -0.52 -15.06 9.66 -34.44 -0.33 -15.39 16 14 H 0.07 2.24 7.99 -52.49 -0.42 1.82 16 15 C 0.06 1.91 5.47 -17.82 -0.10 1.81 16 16 N -0.90 -28.27 13.96 55.43 0.77 -27.50 16 17 Si 0.88 21.99 27.47 -169.99 -4.67 17.32 16 18 H -0.28 -6.78 7.11 56.52 0.40 -6.38 16 19 H -0.29 -7.11 7.11 56.52 0.40 -6.71 16 20 H -0.27 -6.38 6.54 56.52 0.37 -6.01 16 21 C -0.19 -1.97 5.40 -26.59 -0.14 -2.11 16 22 C 0.07 0.64 6.84 37.21 0.25 0.90 16 23 O -0.38 -4.10 9.94 -35.23 -0.35 -4.45 16 24 H 0.05 0.36 8.14 -51.93 -0.42 -0.07 16 25 H 0.05 0.32 8.14 -51.93 -0.42 -0.10 16 26 H 0.05 0.33 8.14 -51.93 -0.42 -0.09 16 27 H 0.07 0.60 7.82 -51.93 -0.41 0.19 16 28 H 0.06 0.44 8.14 -51.93 -0.42 0.01 16 29 H 0.08 0.56 8.14 -51.93 -0.42 0.14 16 30 H 0.07 0.62 8.14 -51.93 -0.42 0.19 16 31 H 0.08 0.84 8.14 -51.93 -0.42 0.42 16 32 H 0.07 0.78 8.14 -51.93 -0.42 0.36 16 33 H 0.34 4.55 8.44 -39.29 -0.33 4.22 16 34 H 0.02 0.38 7.52 -51.93 -0.39 -0.01 16 35 H 0.07 1.08 8.06 -51.93 -0.42 0.66 16 36 H 0.06 1.29 8.14 -51.93 -0.42 0.87 16 37 H 0.05 1.02 8.14 -51.93 -0.42 0.60 16 38 H 0.01 0.31 7.20 -51.93 -0.37 -0.06 16 39 H 0.01 0.26 7.57 -51.93 -0.39 -0.13 16 40 H 0.26 7.66 8.31 -40.82 -0.34 7.32 16 41 H 0.07 0.79 8.09 -51.93 -0.42 0.37 16 42 H 0.07 0.79 7.56 -51.93 -0.39 0.40 16 43 H 0.09 0.76 8.14 -51.93 -0.42 0.34 16 44 H 0.05 0.43 8.14 -51.93 -0.42 0.01 16 LS Contribution 343.79 15.07 5.18 5.18 Total: -1.00 -30.66 343.79 -9.24 -39.90 By element: Atomic # 1 Polarization: 7.56 SS G_CDS: -8.61 Total: -1.05 kcal Atomic # 6 Polarization: -18.31 SS G_CDS: -0.89 Total: -19.20 kcal Atomic # 7 Polarization: -37.80 SS G_CDS: 0.11 Total: -37.69 kcal Atomic # 8 Polarization: -4.10 SS G_CDS: -0.35 Total: -4.45 kcal Atomic # 14 Polarization: 21.99 SS G_CDS: -4.67 Total: 17.32 kcal Total LS contribution 5.18 Total: 5.18 kcal Total: -30.66 -9.24 -39.90 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000134652856.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -46.051 kcal (2) G-P(sol) polarization free energy of solvation -30.660 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -76.711 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.238 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.898 kcal (6) G-S(sol) free energy of system = (1) + (5) -85.949 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds