Wall clock time and date at job start Mon Mar 30 2020 06:36:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.53000 * 109.47083 * 2 1 4 4 C 1.53002 * 109.47083 * 179.97438 * 3 2 1 5 5 H 1.09002 * 109.48876 * 304.97041 * 4 3 2 6 6 C 1.53098 * 109.48593 * 185.02989 * 4 3 2 7 7 C 1.53175 * 109.16209 * 182.49481 * 6 4 3 8 8 H 1.08997 * 109.54379 * 296.94050 * 7 6 4 9 9 N 1.46902 * 109.54740 * 176.76012 * 7 6 4 10 10 C 1.46893 * 111.00110 * 155.17808 * 9 7 6 11 11 C 1.53001 * 109.47061 * 179.97438 * 10 9 7 12 12 C 1.53000 * 109.46872 * 180.02562 * 11 10 9 13 13 C 1.50708 * 109.46973 * 180.02562 * 12 11 10 14 14 H 1.07991 * 119.99789 * 0.02562 * 13 12 11 15 15 C 1.37877 * 120.00008 * 179.97438 * 13 12 11 16 16 N 1.31514 * 120.00089 * 180.02562 * 15 13 12 17 17 Si 1.86798 * 119.99938 * 0.02562 * 15 13 12 18 18 H 1.48506 * 109.47297 * 269.99556 * 17 15 13 19 19 H 1.48503 * 109.47261 * 149.99737 * 17 15 13 20 20 H 1.48500 * 109.47454 * 29.99730 * 17 15 13 21 21 C 1.53186 * 109.10644 * 56.84779 * 7 6 4 22 22 C 1.53092 * 109.16306 * 303.06748 * 21 7 6 23 23 O 1.42896 * 109.41636 * 57.60626 * 22 21 7 24 24 H 1.09000 * 109.46790 * 60.00196 * 1 2 3 25 25 H 1.08999 * 109.46742 * 180.02562 * 1 2 3 26 26 H 1.08997 * 109.46870 * 299.99961 * 1 2 3 27 27 H 1.09004 * 109.47414 * 239.99664 * 2 1 3 28 28 H 1.09003 * 109.47256 * 119.99644 * 2 1 3 29 29 H 1.08997 * 109.47236 * 60.00263 * 3 2 1 30 30 H 1.09000 * 109.47148 * 299.99585 * 3 2 1 31 31 H 1.09000 * 109.59785 * 62.54723 * 6 4 3 32 32 H 1.09004 * 109.45301 * 302.35850 * 6 4 3 33 33 H 1.00905 * 110.99227 * 279.13371 * 9 7 6 34 34 H 1.09007 * 109.47355 * 60.00194 * 10 9 7 35 35 H 1.09000 * 109.47422 * 300.00155 * 10 9 7 36 36 H 1.08996 * 109.46845 * 60.00446 * 11 10 9 37 37 H 1.08996 * 109.47077 * 299.99617 * 11 10 9 38 38 H 1.08994 * 109.48028 * 60.00123 * 12 11 10 39 39 H 1.09000 * 109.47206 * 299.99977 * 12 11 10 40 40 H 0.96997 * 119.99848 * 180.02562 * 16 15 13 41 41 H 1.08997 * 109.51858 * 62.97225 * 21 7 6 42 42 H 1.09001 * 109.52132 * 183.09831 * 21 7 6 43 43 H 1.09001 * 109.47649 * 177.59241 * 22 21 7 44 44 H 1.09001 * 109.47781 * 297.62414 * 22 21 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 3.5700 1.4425 0.0006 5 1 3.9333 0.8537 0.8429 6 6 4.0807 2.8803 0.1272 7 6 5.6111 2.8776 0.0644 8 1 6.0099 2.3207 0.9122 9 7 6.1072 4.2597 0.1071 10 6 7.4790 4.3107 0.6300 11 6 7.9601 5.7628 0.6587 12 6 9.3891 5.8158 1.2028 13 6 9.8629 7.2462 1.2317 14 1 9.2099 8.0381 0.8961 15 6 11.1296 7.5438 1.6877 16 7 11.5428 8.7921 1.7134 17 14 12.2588 6.1740 2.2689 18 1 12.0575 5.9500 3.7231 19 1 13.6715 6.5571 2.0181 20 1 11.9453 4.9260 1.5278 21 6 6.0582 2.2128 -1.2413 22 6 5.4713 0.8007 -1.3128 23 8 4.0472 0.8729 -1.2201 24 1 -0.3633 0.5138 -0.8900 25 1 -0.3633 -1.0277 0.0005 26 1 -0.3633 0.5138 0.8900 27 1 1.8934 -0.5139 -0.8900 28 1 1.8934 -0.5138 0.8900 29 1 1.6767 1.9563 0.8900 30 1 1.6767 1.9563 -0.8900 31 1 3.7560 3.3011 1.0788 32 1 3.6835 3.4800 -0.6918 33 1 6.0506 4.6923 -0.8027 34 1 8.1350 3.7236 -0.0128 35 1 7.4984 3.9011 1.6399 36 1 7.3043 6.3501 1.3013 37 1 7.9409 6.1720 -0.3513 38 1 10.0448 5.2286 0.5600 39 1 9.4088 5.4065 2.2128 40 1 12.4341 9.0014 2.0338 41 1 5.7023 2.7986 -2.0887 42 1 7.1465 2.1577 -1.2679 43 1 5.7510 0.3384 -2.2595 44 1 5.8595 0.2035 -0.4877 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000134652856.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:36:09 Heat of formation + Delta-G solvation = -105.114521 kcal Electronic energy + Delta-G solvation = -18963.617841 eV Core-core repulsion = 16106.415289 eV Total energy + Delta-G solvation = -2857.202552 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 255.194 amu Computer time = 0.48 seconds Orbital eigenvalues (eV) -40.69320 -37.87032 -35.94289 -35.59753 -34.01287 -32.20025 -31.67705 -28.56916 -27.47548 -24.72280 -23.99689 -23.09960 -22.07029 -21.78590 -21.03258 -18.91327 -17.48540 -17.13034 -16.64391 -16.35318 -15.87881 -15.76174 -15.41009 -15.13849 -15.03363 -14.73845 -14.23696 -14.00857 -13.70184 -13.53068 -13.42169 -13.00763 -12.74080 -12.56362 -12.47828 -12.28725 -12.18453 -11.85581 -11.83553 -11.75970 -11.64889 -11.47675 -11.45655 -11.32037 -11.04249 -10.77281 -10.45316 -9.32530 -8.30134 -6.34665 1.35331 1.37338 1.49449 2.35726 2.84450 3.04912 3.10492 3.74463 3.78491 3.94912 4.11940 4.14450 4.16686 4.20285 4.31702 4.34101 4.38316 4.49647 4.60683 4.65772 4.74083 4.77586 4.81197 4.87275 4.90734 4.96319 4.99455 5.06488 5.08225 5.10758 5.17881 5.24472 5.32841 5.40604 5.50508 5.51530 5.60049 5.65467 6.09803 6.28729 6.32135 6.43975 6.73719 7.29877 8.86900 Molecular weight = 255.19amu Principal moments of inertia in cm(-1) A = 0.046948 B = 0.003028 C = 0.002958 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 596.258644 B = 9244.769119 C = 9462.984085 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C -0.120 4.120 3 C -0.109 4.109 4 C 0.091 3.909 5 H 0.061 0.939 6 C -0.130 4.130 7 C 0.085 3.915 8 H 0.075 0.925 9 N -0.689 5.689 10 C 0.071 3.929 11 C -0.091 4.091 12 C -0.010 4.010 13 C -0.534 4.534 14 H 0.028 0.972 15 C 0.000 4.000 16 N -0.953 5.953 17 Si 0.956 3.044 18 H -0.266 1.266 19 H -0.284 1.284 20 H -0.245 1.245 21 C -0.181 4.181 22 C 0.066 3.934 23 O -0.392 6.392 24 H 0.052 0.948 25 H 0.058 0.942 26 H 0.058 0.942 27 H 0.057 0.943 28 H 0.062 0.938 29 H 0.086 0.914 30 H 0.065 0.935 31 H 0.078 0.922 32 H 0.065 0.935 33 H 0.343 0.657 34 H 0.032 0.968 35 H 0.069 0.931 36 H 0.048 0.952 37 H 0.045 0.955 38 H 0.020 0.980 39 H 0.019 0.981 40 H 0.266 0.734 41 H 0.068 0.932 42 H 0.072 0.928 43 H 0.104 0.896 44 H 0.057 0.943 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.435 -21.759 -4.341 28.847 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.158 4.158 3 C -0.146 4.146 4 C 0.033 3.967 5 H 0.079 0.921 6 C -0.169 4.169 7 C -0.025 4.025 8 H 0.093 0.907 9 N -0.319 5.319 10 C -0.058 4.058 11 C -0.129 4.129 12 C -0.048 4.048 13 C -0.573 4.573 14 H 0.047 0.953 15 C -0.197 4.197 16 N -0.594 5.594 17 Si 0.779 3.221 18 H -0.191 1.191 19 H -0.209 1.209 20 H -0.168 1.168 21 C -0.221 4.221 22 C -0.011 4.011 23 O -0.311 6.311 24 H 0.071 0.929 25 H 0.077 0.923 26 H 0.077 0.923 27 H 0.076 0.924 28 H 0.080 0.920 29 H 0.105 0.895 30 H 0.083 0.917 31 H 0.097 0.903 32 H 0.083 0.917 33 H 0.161 0.839 34 H 0.050 0.950 35 H 0.087 0.913 36 H 0.066 0.934 37 H 0.064 0.936 38 H 0.038 0.962 39 H 0.037 0.963 40 H 0.075 0.925 41 H 0.087 0.913 42 H 0.091 0.909 43 H 0.122 0.878 44 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges -18.715 -21.562 -3.825 28.806 hybrid contribution 1.567 0.143 -0.358 1.614 sum -17.148 -21.419 -4.183 27.754 Atomic orbital electron populations 1.21773 0.95210 1.01960 1.01961 1.21454 0.96220 0.96128 1.01969 1.21639 0.91804 0.98064 1.03104 1.22221 0.95311 0.92384 0.86749 0.92109 1.22153 0.94276 0.97230 1.03213 1.21658 0.95581 0.88427 0.96833 0.90685 1.60559 1.22364 1.17367 1.31626 1.21903 0.88101 0.96134 0.99676 1.21268 0.95920 0.95651 1.00086 1.19488 0.94443 0.94550 0.96285 1.21523 0.99715 0.93510 1.42504 0.95320 1.26102 0.99954 0.98252 0.95378 1.70081 1.19808 1.20411 1.49066 0.85579 0.77225 0.79864 0.79469 1.19087 1.20949 1.16841 1.22895 1.01513 0.98657 0.99007 1.22549 0.80510 0.95047 1.02972 1.87902 1.21436 1.82410 1.39373 0.92858 0.92329 0.92300 0.92404 0.91959 0.89524 0.91662 0.90332 0.91673 0.83893 0.94962 0.91273 0.93354 0.93587 0.96160 0.96270 0.92490 0.91284 0.90943 0.87785 0.92512 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.78 9.91 71.98 0.71 -1.06 16 2 C -0.12 -1.67 5.83 30.60 0.18 -1.49 16 3 C -0.11 -1.62 4.92 30.60 0.15 -1.47 16 4 C 0.09 1.59 2.64 30.63 0.08 1.67 16 5 H 0.06 1.01 8.14 -2.39 -0.02 0.99 16 6 C -0.13 -2.54 5.04 30.69 0.15 -2.38 16 7 C 0.08 1.83 2.55 45.04 0.11 1.94 16 8 H 0.07 1.64 7.80 -2.39 -0.02 1.62 16 9 N -0.69 -18.18 6.26 -490.95 -3.07 -21.26 16 10 C 0.07 2.17 5.49 86.30 0.47 2.64 16 11 C -0.09 -3.60 5.41 30.59 0.17 -3.44 16 12 C -0.01 -0.46 4.04 29.85 0.12 -0.34 16 13 C -0.53 -31.62 9.66 25.60 0.25 -31.37 16 14 H 0.03 1.87 7.99 -2.92 -0.02 1.85 16 15 C 0.00 -0.03 5.47 84.65 0.46 0.43 16 16 N -0.95 -60.86 13.96 21.45 0.30 -60.57 16 17 Si 0.96 44.64 27.47 68.60 1.88 46.52 16 18 H -0.27 -11.89 7.11 99.48 0.71 -11.18 16 19 H -0.28 -12.97 7.11 99.48 0.71 -12.26 16 20 H -0.24 -10.51 6.54 99.48 0.65 -9.86 16 21 C -0.18 -3.47 5.40 30.69 0.17 -3.30 16 22 C 0.07 1.13 6.84 72.01 0.49 1.62 16 23 O -0.39 -7.78 9.94 -148.98 -1.48 -9.26 16 24 H 0.05 0.63 8.14 -2.39 -0.02 0.61 16 25 H 0.06 0.62 8.14 -2.39 -0.02 0.60 16 26 H 0.06 0.62 8.14 -2.39 -0.02 0.60 16 27 H 0.06 0.93 7.82 -2.39 -0.02 0.91 16 28 H 0.06 0.81 8.14 -2.39 -0.02 0.79 16 29 H 0.09 1.11 8.14 -2.39 -0.02 1.09 16 30 H 0.06 1.05 8.14 -2.39 -0.02 1.03 16 31 H 0.08 1.54 8.14 -2.39 -0.02 1.52 16 32 H 0.06 1.35 8.14 -2.39 -0.02 1.33 16 33 H 0.34 8.77 8.44 -89.69 -0.76 8.02 16 34 H 0.03 0.94 7.52 -2.38 -0.02 0.92 16 35 H 0.07 2.09 8.06 -2.39 -0.02 2.07 16 36 H 0.05 2.02 8.14 -2.39 -0.02 2.00 16 37 H 0.05 1.83 8.14 -2.39 -0.02 1.81 16 38 H 0.02 0.93 7.20 -2.39 -0.02 0.91 16 39 H 0.02 0.87 7.57 -2.39 -0.02 0.85 16 40 H 0.27 15.79 8.31 -92.71 -0.77 15.02 16 41 H 0.07 1.38 8.09 -2.39 -0.02 1.36 16 42 H 0.07 1.40 7.56 -2.39 -0.02 1.39 16 43 H 0.10 1.49 8.14 -2.39 -0.02 1.47 16 44 H 0.06 0.88 8.14 -2.39 -0.02 0.86 16 Total: -1.00 -66.06 343.79 1.27 -64.79 By element: Atomic # 1 Polarization: 16.21 SS G_CDS: 0.11 Total: 16.32 kcal Atomic # 6 Polarization: -40.07 SS G_CDS: 3.52 Total: -36.55 kcal Atomic # 7 Polarization: -79.05 SS G_CDS: -2.77 Total: -81.82 kcal Atomic # 8 Polarization: -7.78 SS G_CDS: -1.48 Total: -9.26 kcal Atomic # 14 Polarization: 44.64 SS G_CDS: 1.88 Total: 46.52 kcal Total: -66.06 1.27 -64.79 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000134652856.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -40.320 kcal (2) G-P(sol) polarization free energy of solvation -66.060 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -106.381 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.266 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.794 kcal (6) G-S(sol) free energy of system = (1) + (5) -105.115 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.48 seconds