Wall clock time and date at job start Mon Mar 30 2020 06:36:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 C 1.52997 * 109.46577 * 2 1 4 4 C 1.53004 * 109.46950 * 180.02562 * 3 2 1 5 5 H 1.08997 * 109.48933 * 54.96906 * 4 3 2 6 6 C 1.53095 * 109.48191 * 175.00158 * 4 3 2 7 7 C 1.53176 * 109.16286 * 177.59206 * 6 4 3 8 8 H 1.08998 * 109.54003 * 183.15247 * 7 6 4 9 9 N 1.46899 * 109.54533 * 62.88805 * 7 6 4 10 10 C 1.46898 * 111.00417 * 154.99953 * 9 7 6 11 11 C 1.52991 * 109.47456 * 179.97438 * 10 9 7 12 12 C 1.52998 * 109.47411 * 180.02562 * 11 10 9 13 13 C 1.50704 * 109.47364 * 179.97438 * 12 11 10 14 14 H 1.08000 * 120.00061 * 0.02562 * 13 12 11 15 15 C 1.37869 * 120.00018 * 179.97438 * 13 12 11 16 16 N 1.31518 * 120.00093 * 180.02562 * 15 13 12 17 17 Si 1.86801 * 120.00110 * 0.02562 * 15 13 12 18 18 H 1.48505 * 109.47072 * 89.99634 * 17 15 13 19 19 H 1.48496 * 109.47458 * 209.99863 * 17 15 13 20 20 H 1.48501 * 109.47306 * 330.00026 * 17 15 13 21 21 C 1.53178 * 109.03609 * 303.01594 * 7 6 4 22 22 C 1.53095 * 109.16080 * 56.98198 * 21 7 6 23 23 O 1.42903 * 109.47750 * 294.94348 * 4 3 2 24 24 H 1.08996 * 109.47236 * 299.99518 * 1 2 3 25 25 H 1.09006 * 109.47317 * 60.00298 * 1 2 3 26 26 H 1.09005 * 109.46500 * 180.02562 * 1 2 3 27 27 H 1.08996 * 109.47236 * 240.00482 * 2 1 3 28 28 H 1.08995 * 109.46986 * 120.00038 * 2 1 3 29 29 H 1.09000 * 109.47392 * 60.00114 * 3 2 1 30 30 H 1.09003 * 109.47311 * 299.99419 * 3 2 1 31 31 H 1.09001 * 109.52293 * 57.67958 * 6 4 3 32 32 H 1.09007 * 109.52035 * 297.49726 * 6 4 3 33 33 H 1.00908 * 111.00019 * 31.04040 * 9 7 6 34 34 H 1.09000 * 109.46908 * 300.00168 * 10 9 7 35 35 H 1.09000 * 109.47055 * 59.99616 * 10 9 7 36 36 H 1.09000 * 109.47440 * 300.00137 * 11 10 9 37 37 H 1.09000 * 109.47061 * 59.99914 * 11 10 9 38 38 H 1.09002 * 109.46970 * 299.99871 * 12 11 10 39 39 H 1.09000 * 109.47138 * 59.99888 * 12 11 10 40 40 H 0.97004 * 120.00071 * 180.02562 * 16 15 13 41 41 H 1.08998 * 109.52143 * 176.88477 * 21 7 6 42 42 H 1.08998 * 109.52176 * 297.08014 * 21 7 6 43 43 H 1.08998 * 109.47951 * 62.37722 * 22 21 7 44 44 H 1.09003 * 109.47728 * 182.40543 * 22 21 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 6 3.5699 1.4426 -0.0006 5 1 3.9333 0.8530 -0.8423 6 6 4.0804 2.8805 -0.1264 7 6 5.6109 2.8778 -0.0658 8 1 5.9789 3.9033 -0.0985 9 7 6.1467 2.1250 -1.2078 10 6 7.5090 2.5656 -1.5364 11 6 8.0321 1.7602 -2.7274 12 6 9.4512 2.2187 -3.0693 13 6 9.9668 1.4249 -4.2420 14 1 9.3443 0.6693 -4.6982 15 6 11.2326 1.6641 -4.7332 16 7 11.6823 0.9717 -5.7570 17 14 12.3089 2.9715 -3.9447 18 1 13.1156 2.3594 -2.8584 19 1 13.2155 3.5500 -4.9687 20 1 11.4513 4.0443 -3.3801 21 6 6.0580 2.2144 1.2405 22 6 5.4712 0.8023 1.3135 23 8 4.0470 0.8743 1.2207 24 1 -0.3633 0.5137 0.8900 25 1 -0.3634 0.5138 -0.8900 26 1 -0.3632 -1.0278 0.0005 27 1 1.8934 -0.5137 -0.8900 28 1 1.8933 -0.5138 0.8899 29 1 1.6766 1.9564 0.8900 30 1 1.6766 1.9563 -0.8900 31 1 3.6844 3.4806 0.6929 32 1 3.7542 3.3009 -1.0778 33 1 5.5384 2.2022 -2.0092 34 1 7.4965 3.6253 -1.7913 35 1 8.1597 2.4064 -0.6766 36 1 8.0447 0.7006 -2.4721 37 1 7.3815 1.9191 -3.5873 38 1 9.4391 3.2783 -3.3245 39 1 10.1016 2.0595 -2.2092 40 1 12.5731 1.1397 -6.1024 41 1 7.1463 2.1584 1.2667 42 1 5.7020 2.8010 2.0874 43 1 5.8595 0.2043 0.4890 44 1 5.7509 0.3410 2.2606 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000134652880.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:36:12 Heat of formation + Delta-G solvation = -83.994837 kcal Electronic energy + Delta-G solvation = -19301.142403 eV Core-core repulsion = 16444.855669 eV Total energy + Delta-G solvation = -2856.286734 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 255.194 amu Computer time = 0.39 seconds Orbital eigenvalues (eV) -39.80674 -36.50224 -35.03892 -33.94862 -32.21034 -31.31113 -30.21422 -27.38406 -26.05910 -24.06657 -22.80148 -22.09539 -21.13046 -20.15346 -19.32829 -16.74056 -16.51148 -16.14134 -15.68535 -14.97529 -14.89868 -14.65451 -14.18480 -14.01686 -13.63813 -13.22783 -12.93737 -12.79488 -12.48226 -12.36659 -12.15215 -11.85539 -11.58705 -11.54269 -11.41910 -11.06333 -10.99194 -10.80412 -10.77928 -10.60549 -10.20134 -9.94926 -9.74947 -9.56914 -9.40772 -9.16938 -8.53351 -8.25239 -6.03634 -4.01450 3.30449 3.37662 3.41146 3.79564 4.24189 4.45416 4.47042 4.70285 4.84974 4.89499 4.98107 5.10951 5.15403 5.24440 5.30238 5.41889 5.46908 5.52704 5.59267 5.64482 5.66798 5.68548 5.74560 5.80765 5.88746 5.91442 5.94990 6.04570 6.07798 6.18076 6.20466 6.23110 6.53982 6.57907 6.91282 7.19209 7.30555 7.33796 7.43158 7.54141 7.80792 8.55495 9.01875 9.59003 11.09974 Molecular weight = 255.19amu Principal moments of inertia in cm(-1) A = 0.033678 B = 0.003513 C = 0.003343 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 831.198240 B = 7968.714336 C = 8372.751970 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C -0.123 4.123 3 C -0.112 4.112 4 C 0.097 3.903 5 H 0.068 0.932 6 C -0.150 4.150 7 C 0.082 3.918 8 H 0.045 0.955 9 N -0.685 5.685 10 C 0.057 3.943 11 C -0.099 4.099 12 C -0.013 4.013 13 C -0.519 4.519 14 H 0.072 0.928 15 C 0.065 3.935 16 N -0.905 5.905 17 Si 0.881 3.119 18 H -0.277 1.277 19 H -0.288 1.288 20 H -0.267 1.267 21 C -0.142 4.142 22 C 0.070 3.930 23 O -0.383 6.383 24 H 0.052 0.948 25 H 0.051 0.949 26 H 0.052 0.948 27 H 0.060 0.940 28 H 0.069 0.931 29 H 0.066 0.934 30 H 0.072 0.928 31 H 0.073 0.927 32 H 0.070 0.930 33 H 0.339 0.661 34 H 0.024 0.976 35 H 0.066 0.934 36 H 0.061 0.939 37 H 0.050 0.950 38 H 0.013 0.987 39 H 0.011 0.989 40 H 0.263 0.737 41 H 0.073 0.927 42 H 0.065 0.935 43 H 0.066 0.934 44 H 0.083 0.917 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.128 2.931 14.391 24.116 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.160 4.160 3 C -0.150 4.150 4 C 0.039 3.961 5 H 0.086 0.914 6 C -0.189 4.189 7 C -0.028 4.028 8 H 0.063 0.937 9 N -0.317 5.317 10 C -0.071 4.071 11 C -0.137 4.137 12 C -0.050 4.050 13 C -0.557 4.557 14 H 0.090 0.910 15 C -0.136 4.136 16 N -0.544 5.544 17 Si 0.708 3.292 18 H -0.203 1.203 19 H -0.214 1.214 20 H -0.191 1.191 21 C -0.180 4.180 22 C -0.007 4.007 23 O -0.302 6.302 24 H 0.071 0.929 25 H 0.070 0.930 26 H 0.071 0.929 27 H 0.079 0.921 28 H 0.088 0.912 29 H 0.085 0.915 30 H 0.091 0.909 31 H 0.091 0.909 32 H 0.089 0.911 33 H 0.157 0.843 34 H 0.042 0.958 35 H 0.084 0.916 36 H 0.080 0.920 37 H 0.069 0.931 38 H 0.031 0.969 39 H 0.029 0.971 40 H 0.072 0.928 41 H 0.091 0.909 42 H 0.084 0.916 43 H 0.085 0.915 44 H 0.101 0.899 Dipole moment (debyes) X Y Z Total from point charges -18.888 2.324 14.804 24.110 hybrid contribution 0.848 1.740 -0.329 1.963 sum -18.040 4.064 14.476 23.484 Atomic orbital electron populations 1.21786 0.96197 1.01477 1.01503 1.21474 0.95273 0.96634 1.02633 1.21659 0.93316 0.97677 1.02318 1.22012 0.93576 0.92597 0.87927 0.91386 1.22392 0.95406 0.98468 1.02587 1.21533 0.93544 0.95481 0.92259 0.93738 1.60584 1.04230 1.58167 1.08718 1.22189 0.88712 0.96812 0.99418 1.21433 0.97991 0.99519 0.94725 1.19538 0.92211 0.96546 0.96753 1.21153 1.00404 1.20473 1.13657 0.91034 1.25045 0.97831 0.95981 0.94747 1.69922 1.18250 1.41204 1.25013 0.86764 0.80541 0.82675 0.79188 1.20295 1.21427 1.19129 1.22140 1.01469 0.97848 0.96568 1.22437 0.80415 0.95933 1.01921 1.87845 1.21465 1.82473 1.38412 0.92931 0.92956 0.92874 0.92080 0.91233 0.91498 0.90933 0.90855 0.91149 0.84259 0.95821 0.91557 0.92002 0.93075 0.96915 0.97105 0.92770 0.90886 0.91643 0.91541 0.89862 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.14 9.91 37.16 0.37 -0.77 16 2 C -0.12 -1.09 5.83 -26.73 -0.16 -1.25 16 3 C -0.11 -1.00 4.92 -26.73 -0.13 -1.13 16 4 C 0.10 1.03 2.48 -26.68 -0.07 0.96 16 5 H 0.07 0.79 7.75 -51.93 -0.40 0.39 16 6 C -0.15 -1.51 4.81 -26.59 -0.13 -1.63 16 7 C 0.08 0.95 2.85 -67.53 -0.19 0.76 16 8 H 0.04 0.53 7.80 -51.93 -0.41 0.13 16 9 N -0.69 -9.14 5.09 -106.54 -0.54 -9.69 16 10 C 0.06 0.91 5.49 -3.83 -0.02 0.89 16 11 C -0.10 -1.94 5.41 -26.74 -0.14 -2.09 16 12 C -0.01 -0.30 4.04 -27.88 -0.11 -0.41 16 13 C -0.52 -14.99 9.66 -34.44 -0.33 -15.33 16 14 H 0.07 2.22 7.99 -52.49 -0.42 1.80 16 15 C 0.06 1.91 5.47 -17.82 -0.10 1.82 16 16 N -0.90 -28.24 13.96 55.43 0.77 -27.46 16 17 Si 0.88 21.95 27.47 -169.99 -4.67 17.28 16 18 H -0.28 -6.77 7.11 56.52 0.40 -6.37 16 19 H -0.29 -7.10 7.11 56.52 0.40 -6.70 16 20 H -0.27 -6.38 6.54 56.52 0.37 -6.01 16 21 C -0.14 -1.61 5.75 -26.59 -0.15 -1.76 16 22 C 0.07 0.81 6.68 37.21 0.25 1.06 16 23 O -0.38 -4.67 9.94 -35.23 -0.35 -5.02 16 24 H 0.05 0.38 8.14 -51.93 -0.42 -0.05 16 25 H 0.05 0.36 8.14 -51.93 -0.42 -0.06 16 26 H 0.05 0.37 8.14 -51.93 -0.42 -0.05 16 27 H 0.06 0.56 8.14 -51.93 -0.42 0.13 16 28 H 0.07 0.69 7.83 -51.93 -0.41 0.29 16 29 H 0.07 0.60 8.14 -51.93 -0.42 0.18 16 30 H 0.07 0.57 8.14 -51.93 -0.42 0.15 16 31 H 0.07 0.71 8.14 -51.93 -0.42 0.28 16 32 H 0.07 0.64 8.07 -51.92 -0.42 0.22 16 33 H 0.34 4.30 8.32 -39.29 -0.33 3.97 16 34 H 0.02 0.38 8.06 -51.93 -0.42 -0.04 16 35 H 0.07 1.06 7.43 -51.93 -0.39 0.68 16 36 H 0.06 1.26 8.14 -51.93 -0.42 0.84 16 37 H 0.05 1.00 8.14 -51.93 -0.42 0.58 16 38 H 0.01 0.30 7.20 -51.93 -0.37 -0.07 16 39 H 0.01 0.25 7.57 -51.93 -0.39 -0.14 16 40 H 0.26 7.65 8.31 -40.82 -0.34 7.31 16 41 H 0.07 0.86 7.43 -51.93 -0.39 0.48 16 42 H 0.06 0.69 8.14 -51.93 -0.42 0.26 16 43 H 0.07 0.87 7.75 -51.93 -0.40 0.47 16 44 H 0.08 0.86 8.14 -51.93 -0.42 0.44 16 LS Contribution 341.59 15.07 5.15 5.15 Total: -1.00 -30.42 341.59 -9.12 -39.53 By element: Atomic # 1 Polarization: 7.67 SS G_CDS: -8.56 Total: -0.89 kcal Atomic # 6 Polarization: -17.98 SS G_CDS: -0.92 Total: -18.90 kcal Atomic # 7 Polarization: -37.38 SS G_CDS: 0.23 Total: -37.15 kcal Atomic # 8 Polarization: -4.67 SS G_CDS: -0.35 Total: -5.02 kcal Atomic # 14 Polarization: 21.95 SS G_CDS: -4.67 Total: 17.28 kcal Total LS contribution 5.15 Total: 5.15 kcal Total: -30.42 -9.12 -39.53 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000134652880.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -44.464 kcal (2) G-P(sol) polarization free energy of solvation -30.416 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -74.880 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.115 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.531 kcal (6) G-S(sol) free energy of system = (1) + (5) -83.995 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.39 seconds