Wall clock time and date at job start Mon Mar 30 2020 06:36:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 C 1.52997 * 109.46577 * 2 1 4 4 C 1.53004 * 109.46950 * 180.02562 * 3 2 1 5 5 H 1.08997 * 109.48933 * 54.96906 * 4 3 2 6 6 C 1.53095 * 109.48191 * 175.00158 * 4 3 2 7 7 C 1.53176 * 109.16286 * 177.59206 * 6 4 3 8 8 H 1.08998 * 109.54003 * 183.15247 * 7 6 4 9 9 N 1.46899 * 109.54533 * 62.88805 * 7 6 4 10 10 C 1.46898 * 111.00417 * 154.99953 * 9 7 6 11 11 C 1.52991 * 109.47456 * 179.97438 * 10 9 7 12 12 C 1.52998 * 109.47411 * 180.02562 * 11 10 9 13 13 C 1.50704 * 109.47364 * 179.97438 * 12 11 10 14 14 H 1.08000 * 120.00061 * 0.02562 * 13 12 11 15 15 C 1.37869 * 120.00018 * 179.97438 * 13 12 11 16 16 N 1.31518 * 120.00093 * 180.02562 * 15 13 12 17 17 Si 1.86801 * 120.00110 * 0.02562 * 15 13 12 18 18 H 1.48505 * 109.47072 * 89.99634 * 17 15 13 19 19 H 1.48496 * 109.47458 * 209.99863 * 17 15 13 20 20 H 1.48501 * 109.47306 * 330.00026 * 17 15 13 21 21 C 1.53178 * 109.03609 * 303.01594 * 7 6 4 22 22 C 1.53095 * 109.16080 * 56.98198 * 21 7 6 23 23 O 1.42903 * 109.47750 * 294.94348 * 4 3 2 24 24 H 1.08996 * 109.47236 * 299.99518 * 1 2 3 25 25 H 1.09006 * 109.47317 * 60.00298 * 1 2 3 26 26 H 1.09005 * 109.46500 * 180.02562 * 1 2 3 27 27 H 1.08996 * 109.47236 * 240.00482 * 2 1 3 28 28 H 1.08995 * 109.46986 * 120.00038 * 2 1 3 29 29 H 1.09000 * 109.47392 * 60.00114 * 3 2 1 30 30 H 1.09003 * 109.47311 * 299.99419 * 3 2 1 31 31 H 1.09001 * 109.52293 * 57.67958 * 6 4 3 32 32 H 1.09007 * 109.52035 * 297.49726 * 6 4 3 33 33 H 1.00908 * 111.00019 * 31.04040 * 9 7 6 34 34 H 1.09000 * 109.46908 * 300.00168 * 10 9 7 35 35 H 1.09000 * 109.47055 * 59.99616 * 10 9 7 36 36 H 1.09000 * 109.47440 * 300.00137 * 11 10 9 37 37 H 1.09000 * 109.47061 * 59.99914 * 11 10 9 38 38 H 1.09002 * 109.46970 * 299.99871 * 12 11 10 39 39 H 1.09000 * 109.47138 * 59.99888 * 12 11 10 40 40 H 0.97004 * 120.00071 * 180.02562 * 16 15 13 41 41 H 1.08998 * 109.52143 * 176.88477 * 21 7 6 42 42 H 1.08998 * 109.52176 * 297.08014 * 21 7 6 43 43 H 1.08998 * 109.47951 * 62.37722 * 22 21 7 44 44 H 1.09003 * 109.47728 * 182.40543 * 22 21 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 6 3.5699 1.4426 -0.0006 5 1 3.9333 0.8530 -0.8423 6 6 4.0804 2.8805 -0.1264 7 6 5.6109 2.8778 -0.0658 8 1 5.9789 3.9033 -0.0985 9 7 6.1467 2.1250 -1.2078 10 6 7.5090 2.5656 -1.5364 11 6 8.0321 1.7602 -2.7274 12 6 9.4512 2.2187 -3.0693 13 6 9.9668 1.4249 -4.2420 14 1 9.3443 0.6693 -4.6982 15 6 11.2326 1.6641 -4.7332 16 7 11.6823 0.9717 -5.7570 17 14 12.3089 2.9715 -3.9447 18 1 13.1156 2.3594 -2.8584 19 1 13.2155 3.5500 -4.9687 20 1 11.4513 4.0443 -3.3801 21 6 6.0580 2.2144 1.2405 22 6 5.4712 0.8023 1.3135 23 8 4.0470 0.8743 1.2207 24 1 -0.3633 0.5137 0.8900 25 1 -0.3634 0.5138 -0.8900 26 1 -0.3632 -1.0278 0.0005 27 1 1.8934 -0.5137 -0.8900 28 1 1.8933 -0.5138 0.8899 29 1 1.6766 1.9564 0.8900 30 1 1.6766 1.9563 -0.8900 31 1 3.6844 3.4806 0.6929 32 1 3.7542 3.3009 -1.0778 33 1 5.5384 2.2022 -2.0092 34 1 7.4965 3.6253 -1.7913 35 1 8.1597 2.4064 -0.6766 36 1 8.0447 0.7006 -2.4721 37 1 7.3815 1.9191 -3.5873 38 1 9.4391 3.2783 -3.3245 39 1 10.1016 2.0595 -2.2092 40 1 12.5731 1.1397 -6.1024 41 1 7.1463 2.1584 1.2667 42 1 5.7020 2.8010 2.0874 43 1 5.8595 0.2043 0.4890 44 1 5.7509 0.3410 2.2606 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000134652880.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:36:12 Heat of formation + Delta-G solvation = -102.535143 kcal Electronic energy + Delta-G solvation = -19301.946371 eV Core-core repulsion = 16444.855669 eV Total energy + Delta-G solvation = -2857.090702 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 255.194 amu Computer time = 0.45 seconds Orbital eigenvalues (eV) -40.70522 -37.66153 -35.89857 -35.55104 -33.99854 -32.12321 -31.66315 -28.50931 -27.43753 -24.98904 -24.10192 -23.26812 -21.98043 -21.72579 -20.30839 -18.91497 -17.36274 -17.04904 -16.81261 -16.44422 -15.90137 -15.73090 -15.49438 -15.29839 -14.80005 -14.53410 -14.23177 -13.80828 -13.66435 -13.48497 -13.28296 -13.07586 -12.81882 -12.68053 -12.57182 -12.31452 -12.19244 -11.80775 -11.79469 -11.58738 -11.51995 -11.47535 -11.39636 -11.29196 -10.97502 -10.77326 -10.33167 -9.31342 -8.30281 -6.34719 1.35204 1.37035 1.49137 2.35542 2.95430 3.04986 3.18069 3.66178 3.87893 3.97942 4.15260 4.21018 4.21959 4.30012 4.34834 4.43744 4.44251 4.59646 4.66027 4.73210 4.81030 4.81901 4.84646 4.93217 4.95312 4.97518 5.00526 5.05807 5.09919 5.15118 5.16758 5.29509 5.34122 5.43443 5.51689 5.52604 5.60593 5.65813 6.09887 6.28864 6.42971 6.47268 6.73864 7.30021 8.86837 Molecular weight = 255.19amu Principal moments of inertia in cm(-1) A = 0.033678 B = 0.003513 C = 0.003343 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 831.198240 B = 7968.714336 C = 8372.751970 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C -0.123 4.123 3 C -0.108 4.108 4 C 0.094 3.906 5 H 0.054 0.946 6 C -0.144 4.144 7 C 0.081 3.919 8 H 0.048 0.952 9 N -0.687 5.687 10 C 0.072 3.928 11 C -0.089 4.089 12 C -0.010 4.010 13 C -0.534 4.534 14 H 0.029 0.971 15 C 0.001 3.999 16 N -0.954 5.954 17 Si 0.955 3.045 18 H -0.266 1.266 19 H -0.284 1.284 20 H -0.245 1.245 21 C -0.140 4.140 22 C 0.070 3.930 23 O -0.394 6.394 24 H 0.056 0.944 25 H 0.059 0.941 26 H 0.055 0.945 27 H 0.054 0.946 28 H 0.054 0.946 29 H 0.069 0.931 30 H 0.087 0.913 31 H 0.083 0.917 32 H 0.082 0.918 33 H 0.344 0.656 34 H 0.030 0.970 35 H 0.068 0.932 36 H 0.047 0.953 37 H 0.046 0.954 38 H 0.019 0.981 39 H 0.018 0.982 40 H 0.266 0.734 41 H 0.067 0.933 42 H 0.077 0.923 43 H 0.047 0.953 44 H 0.094 0.906 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.851 4.962 16.096 26.034 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.160 4.160 3 C -0.145 4.145 4 C 0.036 3.964 5 H 0.072 0.928 6 C -0.182 4.182 7 C -0.029 4.029 8 H 0.066 0.934 9 N -0.320 5.320 10 C -0.057 4.057 11 C -0.127 4.127 12 C -0.048 4.048 13 C -0.572 4.572 14 H 0.047 0.953 15 C -0.196 4.196 16 N -0.594 5.594 17 Si 0.778 3.222 18 H -0.191 1.191 19 H -0.210 1.210 20 H -0.169 1.169 21 C -0.178 4.178 22 C -0.007 4.007 23 O -0.313 6.313 24 H 0.075 0.925 25 H 0.078 0.922 26 H 0.074 0.926 27 H 0.073 0.927 28 H 0.073 0.927 29 H 0.088 0.912 30 H 0.105 0.895 31 H 0.101 0.899 32 H 0.101 0.899 33 H 0.162 0.838 34 H 0.049 0.951 35 H 0.086 0.914 36 H 0.066 0.934 37 H 0.065 0.935 38 H 0.038 0.962 39 H 0.036 0.964 40 H 0.075 0.925 41 H 0.086 0.914 42 H 0.096 0.904 43 H 0.066 0.934 44 H 0.113 0.887 Dipole moment (debyes) X Y Z Total from point charges -19.640 4.354 16.522 26.032 hybrid contribution 1.012 0.999 -0.913 1.689 sum -18.628 5.353 15.609 24.886 Atomic orbital electron populations 1.21762 0.94964 1.01888 1.02067 1.21453 0.96364 0.96578 1.01620 1.21655 0.92026 0.97709 1.03128 1.22102 0.94646 0.92734 0.86907 0.92834 1.22352 0.94064 0.98078 1.03680 1.21602 0.94637 0.95276 0.91382 0.93380 1.60504 1.03269 1.58694 1.09502 1.21898 0.90063 0.96223 0.97494 1.21247 0.95833 0.99253 0.96409 1.19484 0.94534 0.95952 0.94785 1.21529 1.00323 1.20168 1.15182 0.95279 1.26082 0.99560 0.98665 0.95265 1.70082 1.19043 1.43400 1.26915 0.85593 0.78497 0.79763 0.78376 1.19119 1.20961 1.16876 1.22128 1.01106 0.97649 0.96917 1.22429 0.80341 0.96123 1.01785 1.87840 1.21587 1.82789 1.39112 0.92501 0.92216 0.92611 0.92688 0.92685 0.91207 0.89471 0.89863 0.89909 0.83764 0.95148 0.91381 0.93420 0.93523 0.96243 0.96365 0.92488 0.91413 0.90401 0.93439 0.88746 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.02 9.91 71.98 0.71 -1.31 16 2 C -0.12 -2.07 5.83 30.59 0.18 -1.89 16 3 C -0.11 -1.74 4.92 30.59 0.15 -1.59 16 4 C 0.09 1.86 2.48 30.63 0.08 1.93 16 5 H 0.05 1.21 7.75 -2.39 -0.02 1.20 16 6 C -0.14 -2.53 4.81 30.69 0.15 -2.38 16 7 C 0.08 1.69 2.85 45.03 0.13 1.82 16 8 H 0.05 1.01 7.80 -2.39 -0.02 0.99 16 9 N -0.69 -17.32 5.09 -490.98 -2.50 -19.82 16 10 C 0.07 2.17 5.49 86.30 0.47 2.64 16 11 C -0.09 -3.48 5.41 30.59 0.17 -3.31 16 12 C -0.01 -0.45 4.04 29.85 0.12 -0.33 16 13 C -0.53 -31.48 9.66 25.60 0.25 -31.23 16 14 H 0.03 1.89 7.99 -2.91 -0.02 1.87 16 15 C 0.00 0.04 5.47 84.65 0.46 0.50 16 16 N -0.95 -60.87 13.96 21.44 0.30 -60.57 16 17 Si 0.95 44.64 27.47 68.60 1.88 46.53 16 18 H -0.27 -11.93 7.11 99.48 0.71 -11.23 16 19 H -0.28 -12.99 7.11 99.48 0.71 -12.29 16 20 H -0.25 -10.56 6.54 99.48 0.65 -9.90 16 21 C -0.14 -2.90 5.75 30.69 0.18 -2.73 16 22 C 0.07 1.56 6.68 72.01 0.48 2.04 16 23 O -0.39 -9.16 9.94 -148.98 -1.48 -10.65 16 24 H 0.06 0.72 8.14 -2.39 -0.02 0.70 16 25 H 0.06 0.72 8.14 -2.38 -0.02 0.70 16 26 H 0.05 0.72 8.14 -2.38 -0.02 0.70 16 27 H 0.05 0.98 8.14 -2.39 -0.02 0.96 16 28 H 0.05 1.08 7.83 -2.39 -0.02 1.06 16 29 H 0.07 1.10 8.14 -2.39 -0.02 1.08 16 30 H 0.09 1.15 8.14 -2.39 -0.02 1.14 16 31 H 0.08 1.34 8.14 -2.39 -0.02 1.33 16 32 H 0.08 1.27 8.07 -2.38 -0.02 1.25 16 33 H 0.34 8.20 8.32 -89.69 -0.75 7.46 16 34 H 0.03 0.88 8.06 -2.39 -0.02 0.86 16 35 H 0.07 2.04 7.43 -2.39 -0.02 2.02 16 36 H 0.05 1.96 8.14 -2.39 -0.02 1.94 16 37 H 0.05 1.83 8.14 -2.39 -0.02 1.81 16 38 H 0.02 0.89 7.20 -2.39 -0.02 0.87 16 39 H 0.02 0.83 7.57 -2.39 -0.02 0.81 16 40 H 0.27 15.78 8.31 -92.70 -0.77 15.01 16 41 H 0.07 1.48 7.43 -2.39 -0.02 1.46 16 42 H 0.08 1.44 8.14 -2.39 -0.02 1.42 16 43 H 0.05 1.23 7.75 -2.39 -0.02 1.21 16 44 H 0.09 1.85 8.14 -2.39 -0.02 1.83 16 Total: -1.00 -65.94 341.59 1.85 -64.09 By element: Atomic # 1 Polarization: 16.12 SS G_CDS: 0.13 Total: 16.25 kcal Atomic # 6 Polarization: -39.35 SS G_CDS: 3.52 Total: -35.83 kcal Atomic # 7 Polarization: -78.18 SS G_CDS: -2.20 Total: -80.38 kcal Atomic # 8 Polarization: -9.16 SS G_CDS: -1.48 Total: -10.65 kcal Atomic # 14 Polarization: 44.64 SS G_CDS: 1.88 Total: 46.53 kcal Total: -65.94 1.85 -64.09 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000134652880.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -38.448 kcal (2) G-P(sol) polarization free energy of solvation -65.937 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -104.385 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.850 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.087 kcal (6) G-S(sol) free energy of system = (1) + (5) -102.535 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.45 seconds