Wall clock time and date at job start Mon Mar 30 2020 06:36:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 C 1.52997 * 109.47021 * 2 1 4 4 C 1.53006 * 109.47021 * 180.02562 * 3 2 1 5 5 H 1.09004 * 109.48106 * 304.98254 * 4 3 2 6 6 C 1.53087 * 109.48278 * 184.94309 * 4 3 2 7 7 C 1.53170 * 109.16495 * 182.40954 * 6 4 3 8 8 H 1.09000 * 109.61871 * 176.88998 * 7 6 4 9 9 N 1.46901 * 109.54354 * 297.11723 * 7 6 4 10 10 C 1.46907 * 110.99697 * 204.55519 * 9 7 6 11 11 C 1.53000 * 109.46796 * 179.97438 * 10 9 7 12 12 C 1.53005 * 109.47150 * 180.02562 * 11 10 9 13 13 C 1.50697 * 109.47219 * 180.02562 * 12 11 10 14 14 H 1.08007 * 119.99892 * 0.02562 * 13 12 11 15 15 C 1.37882 * 120.00318 * 179.97438 * 13 12 11 16 16 N 1.31513 * 119.99382 * 359.97438 * 15 13 12 17 17 Si 1.86797 * 120.00224 * 180.02562 * 15 13 12 18 18 H 1.48493 * 109.47179 * 90.00127 * 17 15 13 19 19 H 1.48500 * 109.46985 * 210.00068 * 17 15 13 20 20 H 1.48501 * 109.47149 * 329.99905 * 17 15 13 21 21 C 1.53179 * 109.03756 * 56.98007 * 7 6 4 22 22 C 1.53090 * 109.16147 * 303.02332 * 21 7 6 23 23 O 1.42900 * 109.41858 * 57.60666 * 22 21 7 24 24 H 1.09000 * 109.46904 * 59.99308 * 1 2 3 25 25 H 1.08997 * 109.47395 * 180.02562 * 1 2 3 26 26 H 1.09004 * 109.46568 * 299.99995 * 1 2 3 27 27 H 1.09004 * 109.46568 * 240.00004 * 2 1 3 28 28 H 1.08992 * 109.47046 * 120.00377 * 2 1 3 29 29 H 1.09004 * 109.46986 * 60.00810 * 3 2 1 30 30 H 1.08992 * 109.47518 * 300.00087 * 3 2 1 31 31 H 1.09000 * 109.52431 * 302.31880 * 6 4 3 32 32 H 1.09007 * 109.51883 * 62.50272 * 6 4 3 33 33 H 1.00894 * 111.00583 * 80.60173 * 9 7 6 34 34 H 1.08998 * 109.47046 * 299.99353 * 10 9 7 35 35 H 1.08994 * 109.47399 * 60.00151 * 10 9 7 36 36 H 1.09000 * 109.47458 * 299.99981 * 11 10 9 37 37 H 1.09002 * 109.47083 * 59.99947 * 11 10 9 38 38 H 1.08998 * 109.46825 * 299.99738 * 12 11 10 39 39 H 1.09002 * 109.47214 * 59.99973 * 12 11 10 40 40 H 0.97001 * 119.99994 * 179.97438 * 16 15 13 41 41 H 1.08994 * 109.52258 * 183.11081 * 21 7 6 42 42 H 1.09001 * 109.57143 * 62.95968 * 21 7 6 43 43 H 1.08998 * 109.47781 * 297.62110 * 22 21 7 44 44 H 1.09001 * 109.48842 * 177.59738 * 22 21 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 3.5701 1.4425 -0.0006 5 1 3.9340 0.8532 0.8411 6 6 4.0807 2.8803 0.1237 7 6 5.6112 2.8775 0.0618 8 1 5.9806 3.9025 0.0942 9 7 6.1478 2.1253 1.2038 10 6 7.5144 2.5588 1.5242 11 6 8.0380 1.7552 2.7163 12 6 9.4610 2.2071 3.0505 13 6 9.9770 1.4151 4.2242 14 1 9.3525 0.6642 4.6854 15 6 11.2466 1.6483 4.7087 16 7 12.0075 2.5616 4.1462 17 14 11.8864 0.6661 6.1631 18 1 12.5675 -0.5586 5.6721 19 1 12.8495 1.4931 6.9336 20 1 10.7506 0.2832 7.0399 21 6 6.0572 2.2132 -1.2444 22 6 5.4701 0.8011 -1.3159 23 8 4.0460 0.8733 -1.2220 24 1 -0.3633 0.5139 -0.8899 25 1 -0.3634 -1.0276 0.0005 26 1 -0.3632 0.5139 0.8900 27 1 1.8933 -0.5139 -0.8900 28 1 1.8934 -0.5139 0.8899 29 1 1.6768 1.9563 0.8901 30 1 1.6767 1.9563 -0.8899 31 1 3.6841 3.4799 -0.6956 32 1 3.7554 3.3013 1.0751 33 1 6.1150 1.1320 1.0301 34 1 8.1599 2.3926 0.6619 35 1 7.5097 3.6194 1.7755 36 1 7.3923 1.9217 3.5786 37 1 8.0427 0.6944 2.4654 38 1 10.1069 2.0408 2.1884 39 1 9.4559 3.2678 3.3015 40 1 12.9006 2.7260 4.4872 41 1 7.1453 2.1572 -1.2715 42 1 5.7014 2.7990 -2.0920 43 1 5.8590 0.2036 -0.4914 44 1 5.7490 0.3389 -2.2629 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000134652900.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:36:15 Heat of formation + Delta-G solvation = -86.642522 kcal Electronic energy + Delta-G solvation = -19272.126044 eV Core-core repulsion = 16415.724498 eV Total energy + Delta-G solvation = -2856.401546 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 255.194 amu Computer time = 0.39 seconds Orbital eigenvalues (eV) -39.98131 -36.45399 -35.02086 -33.88688 -32.18796 -31.33193 -29.80049 -27.29426 -25.81533 -24.17654 -22.82395 -22.43995 -21.17702 -20.14634 -19.27095 -16.57181 -16.49802 -16.10657 -15.54382 -14.94432 -14.80737 -14.55015 -14.38837 -14.14901 -13.81547 -13.11345 -12.96802 -12.57277 -12.31023 -12.14251 -12.04749 -11.72606 -11.64196 -11.45938 -11.36398 -11.08921 -10.92407 -10.78255 -10.72668 -10.60640 -10.52133 -10.18915 -9.70423 -9.39209 -9.32033 -9.04862 -8.34120 -8.18465 -5.99260 -4.01336 3.32477 3.38580 3.42480 3.69738 4.33223 4.48509 4.51780 4.75846 4.80356 4.89106 4.90978 5.02526 5.11579 5.19867 5.31488 5.36584 5.49080 5.49882 5.57851 5.64910 5.68009 5.73684 5.80830 5.84691 5.88056 5.89791 6.00735 6.04375 6.08568 6.18001 6.22529 6.31591 6.71247 6.76659 7.13121 7.19168 7.32727 7.58943 7.68804 7.83668 8.01136 8.44484 9.05895 9.62660 11.12240 Molecular weight = 255.19amu Principal moments of inertia in cm(-1) A = 0.030512 B = 0.003400 C = 0.003212 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 917.456801 B = 8232.744358 C = 8715.817109 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C -0.123 4.123 3 C -0.110 4.110 4 C 0.089 3.911 5 H 0.066 0.934 6 C -0.135 4.135 7 C 0.083 3.917 8 H 0.080 0.920 9 N -0.686 5.686 10 C 0.058 3.942 11 C -0.107 4.107 12 C 0.022 3.978 13 C -0.519 4.519 14 H 0.055 0.945 15 C 0.055 3.945 16 N -0.897 5.897 17 Si 0.892 3.108 18 H -0.281 1.281 19 H -0.286 1.286 20 H -0.273 1.273 21 C -0.188 4.188 22 C 0.063 3.937 23 O -0.380 6.380 24 H 0.052 0.948 25 H 0.052 0.948 26 H 0.052 0.948 27 H 0.068 0.932 28 H 0.060 0.940 29 H 0.075 0.925 30 H 0.067 0.933 31 H 0.068 0.932 32 H 0.079 0.921 33 H 0.335 0.665 34 H 0.024 0.976 35 H 0.067 0.933 36 H 0.056 0.944 37 H 0.043 0.957 38 H 0.013 0.987 39 H 0.016 0.984 40 H 0.260 0.740 41 H 0.074 0.926 42 H 0.073 0.927 43 H 0.050 0.950 44 H 0.092 0.908 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.104 -1.711 -11.526 22.378 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.161 4.161 3 C -0.147 4.147 4 C 0.032 3.968 5 H 0.083 0.917 6 C -0.173 4.173 7 C -0.028 4.028 8 H 0.099 0.901 9 N -0.317 5.317 10 C -0.070 4.070 11 C -0.145 4.145 12 C -0.015 4.015 13 C -0.557 4.557 14 H 0.073 0.927 15 C -0.145 4.145 16 N -0.536 5.536 17 Si 0.720 3.280 18 H -0.207 1.207 19 H -0.212 1.212 20 H -0.198 1.198 21 C -0.227 4.227 22 C -0.014 4.014 23 O -0.300 6.300 24 H 0.071 0.929 25 H 0.071 0.929 26 H 0.071 0.929 27 H 0.086 0.914 28 H 0.079 0.921 29 H 0.094 0.906 30 H 0.086 0.914 31 H 0.086 0.914 32 H 0.098 0.902 33 H 0.154 0.846 34 H 0.043 0.957 35 H 0.085 0.915 36 H 0.074 0.926 37 H 0.062 0.938 38 H 0.031 0.969 39 H 0.034 0.966 40 H 0.070 0.930 41 H 0.092 0.908 42 H 0.092 0.908 43 H 0.068 0.932 44 H 0.110 0.890 Dipole moment (debyes) X Y Z Total from point charges -19.349 -1.277 -11.171 22.379 hybrid contribution 1.329 -0.716 0.211 1.524 sum -18.020 -1.993 -10.960 21.185 Atomic orbital electron populations 1.21782 0.96148 1.01446 1.01576 1.21488 0.95369 0.96736 1.02490 1.21631 0.93010 0.97579 1.02516 1.22145 0.94182 0.93504 0.87014 0.91651 1.22187 0.95128 0.97330 1.02705 1.21599 0.94709 0.98342 0.88141 0.90146 1.60753 1.23694 1.08927 1.38359 1.22164 0.86473 1.00397 0.97967 1.21625 0.99447 0.97833 0.95595 1.19059 0.89419 0.96667 0.96366 1.21262 0.99340 1.20240 1.14879 0.92681 1.25034 0.97010 0.95375 0.97127 1.69967 1.09360 1.32883 1.41433 0.86591 0.78752 0.79953 0.82705 1.20704 1.21227 1.19831 1.22838 1.01628 0.98163 1.00068 1.22494 0.81270 0.95776 1.01908 1.87888 1.20573 1.82511 1.38993 0.92900 0.92915 0.92888 0.91353 0.92125 0.90637 0.91440 0.91380 0.90210 0.84568 0.95750 0.91451 0.92557 0.93794 0.96863 0.96587 0.93038 0.90783 0.90801 0.93201 0.88996 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.16 9.91 37.16 0.37 -0.79 16 2 C -0.12 -1.11 5.83 -26.73 -0.16 -1.26 16 3 C -0.11 -1.02 4.92 -26.73 -0.13 -1.15 16 4 C 0.09 0.97 2.40 -26.68 -0.06 0.91 16 5 H 0.07 0.78 7.37 -51.93 -0.38 0.39 16 6 C -0.14 -1.48 5.11 -26.60 -0.14 -1.61 16 7 C 0.08 1.01 2.89 -67.53 -0.19 0.82 16 8 H 0.08 1.02 7.81 -51.93 -0.41 0.61 16 9 N -0.69 -9.89 5.87 -106.53 -0.63 -10.52 16 10 C 0.06 1.01 5.49 -3.82 -0.02 0.98 16 11 C -0.11 -2.23 5.41 -26.73 -0.14 -2.37 16 12 C 0.02 0.59 4.97 -27.88 -0.14 0.45 16 13 C -0.52 -14.91 9.11 -34.44 -0.31 -15.23 16 14 H 0.05 1.54 7.74 -52.48 -0.41 1.14 16 15 C 0.06 1.61 5.46 -17.82 -0.10 1.51 16 16 N -0.90 -27.25 13.29 55.43 0.74 -26.52 16 17 Si 0.89 21.87 29.54 -169.99 -5.02 16.85 16 18 H -0.28 -6.77 7.11 56.52 0.40 -6.37 16 19 H -0.29 -6.94 7.11 56.52 0.40 -6.54 16 20 H -0.27 -6.57 7.11 56.52 0.40 -6.16 16 21 C -0.19 -2.10 5.72 -26.59 -0.15 -2.25 16 22 C 0.06 0.69 6.58 37.20 0.24 0.93 16 23 O -0.38 -4.52 9.94 -35.23 -0.35 -4.87 16 24 H 0.05 0.38 8.14 -51.93 -0.42 -0.04 16 25 H 0.05 0.37 8.14 -51.93 -0.42 -0.05 16 26 H 0.05 0.38 8.14 -51.93 -0.42 -0.05 16 27 H 0.07 0.67 7.82 -51.93 -0.41 0.27 16 28 H 0.06 0.55 8.14 -51.93 -0.42 0.13 16 29 H 0.08 0.64 8.14 -51.93 -0.42 0.21 16 30 H 0.07 0.62 8.14 -51.93 -0.42 0.20 16 31 H 0.07 0.69 8.14 -51.93 -0.42 0.27 16 32 H 0.08 0.88 8.14 -51.93 -0.42 0.46 16 33 H 0.33 4.69 5.81 -39.29 -0.23 4.46 16 34 H 0.02 0.42 7.40 -51.93 -0.38 0.03 16 35 H 0.07 1.19 8.06 -51.93 -0.42 0.77 16 36 H 0.06 1.20 8.14 -51.93 -0.42 0.77 16 37 H 0.04 0.90 8.14 -51.93 -0.42 0.47 16 38 H 0.01 0.36 8.14 -51.93 -0.42 -0.06 16 39 H 0.02 0.44 8.14 -51.93 -0.42 0.01 16 40 H 0.26 7.44 8.31 -40.82 -0.34 7.10 16 41 H 0.07 0.87 7.40 -51.93 -0.38 0.48 16 42 H 0.07 0.78 8.14 -51.93 -0.42 0.35 16 43 H 0.05 0.56 6.43 -51.93 -0.33 0.23 16 44 H 0.09 0.88 8.14 -51.93 -0.42 0.46 16 LS Contribution 341.90 15.07 5.15 5.15 Total: -1.00 -29.97 341.90 -9.45 -39.41 By element: Atomic # 1 Polarization: 7.96 SS G_CDS: -8.40 Total: -0.44 kcal Atomic # 6 Polarization: -18.13 SS G_CDS: -0.94 Total: -19.07 kcal Atomic # 7 Polarization: -37.15 SS G_CDS: 0.11 Total: -37.04 kcal Atomic # 8 Polarization: -4.52 SS G_CDS: -0.35 Total: -4.87 kcal Atomic # 14 Polarization: 21.87 SS G_CDS: -5.02 Total: 16.85 kcal Total LS contribution 5.15 Total: 5.15 kcal Total: -29.97 -9.45 -39.41 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000134652900.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -47.229 kcal (2) G-P(sol) polarization free energy of solvation -29.966 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -77.195 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.448 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.413 kcal (6) G-S(sol) free energy of system = (1) + (5) -86.643 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.39 seconds