Wall clock time and date at job start Mon Mar 30 2020 06:36:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 C 1.52997 * 109.47021 * 2 1 4 4 C 1.53006 * 109.47021 * 180.02562 * 3 2 1 5 5 H 1.09004 * 109.48106 * 304.98254 * 4 3 2 6 6 C 1.53087 * 109.48278 * 184.94309 * 4 3 2 7 7 C 1.53170 * 109.16495 * 182.40954 * 6 4 3 8 8 H 1.09000 * 109.61871 * 176.88998 * 7 6 4 9 9 N 1.46901 * 109.54354 * 297.11723 * 7 6 4 10 10 C 1.46907 * 110.99697 * 204.55519 * 9 7 6 11 11 C 1.53000 * 109.46796 * 179.97438 * 10 9 7 12 12 C 1.53005 * 109.47150 * 180.02562 * 11 10 9 13 13 C 1.50697 * 109.47219 * 180.02562 * 12 11 10 14 14 H 1.08007 * 119.99892 * 0.02562 * 13 12 11 15 15 C 1.37882 * 120.00318 * 179.97438 * 13 12 11 16 16 N 1.31513 * 119.99382 * 359.97438 * 15 13 12 17 17 Si 1.86797 * 120.00224 * 180.02562 * 15 13 12 18 18 H 1.48493 * 109.47179 * 90.00127 * 17 15 13 19 19 H 1.48500 * 109.46985 * 210.00068 * 17 15 13 20 20 H 1.48501 * 109.47149 * 329.99905 * 17 15 13 21 21 C 1.53179 * 109.03756 * 56.98007 * 7 6 4 22 22 C 1.53090 * 109.16147 * 303.02332 * 21 7 6 23 23 O 1.42900 * 109.41858 * 57.60666 * 22 21 7 24 24 H 1.09000 * 109.46904 * 59.99308 * 1 2 3 25 25 H 1.08997 * 109.47395 * 180.02562 * 1 2 3 26 26 H 1.09004 * 109.46568 * 299.99995 * 1 2 3 27 27 H 1.09004 * 109.46568 * 240.00004 * 2 1 3 28 28 H 1.08992 * 109.47046 * 120.00377 * 2 1 3 29 29 H 1.09004 * 109.46986 * 60.00810 * 3 2 1 30 30 H 1.08992 * 109.47518 * 300.00087 * 3 2 1 31 31 H 1.09000 * 109.52431 * 302.31880 * 6 4 3 32 32 H 1.09007 * 109.51883 * 62.50272 * 6 4 3 33 33 H 1.00894 * 111.00583 * 80.60173 * 9 7 6 34 34 H 1.08998 * 109.47046 * 299.99353 * 10 9 7 35 35 H 1.08994 * 109.47399 * 60.00151 * 10 9 7 36 36 H 1.09000 * 109.47458 * 299.99981 * 11 10 9 37 37 H 1.09002 * 109.47083 * 59.99947 * 11 10 9 38 38 H 1.08998 * 109.46825 * 299.99738 * 12 11 10 39 39 H 1.09002 * 109.47214 * 59.99973 * 12 11 10 40 40 H 0.97001 * 119.99994 * 179.97438 * 16 15 13 41 41 H 1.08994 * 109.52258 * 183.11081 * 21 7 6 42 42 H 1.09001 * 109.57143 * 62.95968 * 21 7 6 43 43 H 1.08998 * 109.47781 * 297.62110 * 22 21 7 44 44 H 1.09001 * 109.48842 * 177.59738 * 22 21 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 3.5701 1.4425 -0.0006 5 1 3.9340 0.8532 0.8411 6 6 4.0807 2.8803 0.1237 7 6 5.6112 2.8775 0.0618 8 1 5.9806 3.9025 0.0942 9 7 6.1478 2.1253 1.2038 10 6 7.5144 2.5588 1.5242 11 6 8.0380 1.7552 2.7163 12 6 9.4610 2.2071 3.0505 13 6 9.9770 1.4151 4.2242 14 1 9.3525 0.6642 4.6854 15 6 11.2466 1.6483 4.7087 16 7 12.0075 2.5616 4.1462 17 14 11.8864 0.6661 6.1631 18 1 12.5675 -0.5586 5.6721 19 1 12.8495 1.4931 6.9336 20 1 10.7506 0.2832 7.0399 21 6 6.0572 2.2132 -1.2444 22 6 5.4701 0.8011 -1.3159 23 8 4.0460 0.8733 -1.2220 24 1 -0.3633 0.5139 -0.8899 25 1 -0.3634 -1.0276 0.0005 26 1 -0.3632 0.5139 0.8900 27 1 1.8933 -0.5139 -0.8900 28 1 1.8934 -0.5139 0.8899 29 1 1.6768 1.9563 0.8901 30 1 1.6767 1.9563 -0.8899 31 1 3.6841 3.4799 -0.6956 32 1 3.7554 3.3013 1.0751 33 1 6.1150 1.1320 1.0301 34 1 8.1599 2.3926 0.6619 35 1 7.5097 3.6194 1.7755 36 1 7.3923 1.9217 3.5786 37 1 8.0427 0.6944 2.4654 38 1 10.1069 2.0408 2.1884 39 1 9.4559 3.2678 3.3015 40 1 12.9006 2.7260 4.4872 41 1 7.1453 2.1572 -1.2715 42 1 5.7014 2.7990 -2.0920 43 1 5.8590 0.2036 -0.4914 44 1 5.7490 0.3389 -2.2629 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000134652900.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:36:14 Heat of formation + Delta-G solvation = -104.110882 kcal Electronic energy + Delta-G solvation = -19272.883529 eV Core-core repulsion = 16415.724498 eV Total energy + Delta-G solvation = -2857.159031 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 255.194 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -40.91602 -37.66000 -35.94041 -35.54823 -33.90460 -32.17616 -31.31789 -28.28076 -27.47092 -25.10982 -24.37662 -23.50071 -22.10554 -21.72278 -20.27853 -18.51092 -17.41275 -17.28704 -16.63843 -16.58200 -15.98147 -15.73979 -15.43928 -15.19731 -15.06226 -14.33645 -13.96736 -13.85307 -13.72111 -13.38168 -13.21631 -13.02226 -12.78447 -12.74589 -12.48563 -12.44488 -12.26256 -12.22727 -11.83705 -11.77181 -11.50249 -11.48876 -11.39090 -11.20624 -10.95529 -10.56550 -10.28453 -9.37963 -8.21404 -6.32499 1.39399 1.40835 1.52257 2.40198 2.85537 3.11770 3.17822 3.69580 3.83292 3.93878 3.99107 4.16189 4.18384 4.23167 4.32742 4.37187 4.43815 4.50245 4.66107 4.74233 4.75837 4.78389 4.83191 4.90683 4.96026 5.00225 5.02546 5.09097 5.11799 5.17026 5.21194 5.27351 5.33137 5.42219 5.50803 5.52416 5.73452 5.84486 6.04445 6.25901 6.32525 6.41463 6.84490 7.36867 8.90589 Molecular weight = 255.19amu Principal moments of inertia in cm(-1) A = 0.030512 B = 0.003400 C = 0.003212 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 917.456801 B = 8232.744358 C = 8715.817109 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C -0.122 4.122 3 C -0.107 4.107 4 C 0.088 3.912 5 H 0.054 0.946 6 C -0.129 4.129 7 C 0.079 3.921 8 H 0.077 0.923 9 N -0.684 5.684 10 C 0.073 3.927 11 C -0.092 4.092 12 C 0.026 3.974 13 C -0.544 4.544 14 H 0.059 0.941 15 C -0.002 4.002 16 N -0.934 5.934 17 Si 0.966 3.034 18 H -0.271 1.271 19 H -0.281 1.281 20 H -0.263 1.263 21 C -0.182 4.182 22 C 0.061 3.939 23 O -0.388 6.388 24 H 0.056 0.944 25 H 0.056 0.944 26 H 0.058 0.942 27 H 0.057 0.943 28 H 0.055 0.945 29 H 0.085 0.915 30 H 0.070 0.930 31 H 0.080 0.920 32 H 0.079 0.921 33 H 0.339 0.661 34 H 0.024 0.976 35 H 0.062 0.938 36 H 0.052 0.948 37 H 0.048 0.952 38 H -0.009 1.009 39 H -0.009 1.009 40 H 0.264 0.736 41 H 0.067 0.933 42 H 0.084 0.916 43 H 0.045 0.955 44 H 0.106 0.894 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -20.254 -2.382 -11.448 23.388 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.160 4.160 3 C -0.144 4.144 4 C 0.031 3.969 5 H 0.072 0.928 6 C -0.167 4.167 7 C -0.031 4.031 8 H 0.095 0.905 9 N -0.316 5.316 10 C -0.057 4.057 11 C -0.130 4.130 12 C -0.011 4.011 13 C -0.582 4.582 14 H 0.077 0.923 15 C -0.199 4.199 16 N -0.574 5.574 17 Si 0.790 3.210 18 H -0.197 1.197 19 H -0.207 1.207 20 H -0.187 1.187 21 C -0.221 4.221 22 C -0.016 4.016 23 O -0.308 6.308 24 H 0.075 0.925 25 H 0.075 0.925 26 H 0.077 0.923 27 H 0.075 0.925 28 H 0.074 0.926 29 H 0.104 0.896 30 H 0.089 0.911 31 H 0.098 0.902 32 H 0.098 0.902 33 H 0.158 0.842 34 H 0.042 0.958 35 H 0.080 0.920 36 H 0.071 0.929 37 H 0.067 0.933 38 H 0.009 0.991 39 H 0.010 0.990 40 H 0.073 0.927 41 H 0.086 0.914 42 H 0.103 0.897 43 H 0.063 0.937 44 H 0.124 0.876 Dipole moment (debyes) X Y Z Total from point charges -20.521 -1.954 -11.105 23.415 hybrid contribution 1.680 -0.486 0.151 1.755 sum -18.841 -2.440 -10.954 21.930 Atomic orbital electron populations 1.21762 0.94982 1.01925 1.02047 1.21461 0.96395 0.96406 1.01716 1.21629 0.91753 0.97873 1.03131 1.22189 0.95240 0.93111 0.86355 0.92825 1.22144 0.93830 0.97583 1.03183 1.21684 0.95655 0.97886 0.87836 0.90470 1.60681 1.21585 1.09424 1.39928 1.21855 0.88042 0.99363 0.96392 1.21374 0.96175 0.98459 0.97021 1.18958 0.92230 0.95045 0.94910 1.21708 0.99966 1.20707 1.15811 0.92280 1.26000 0.97267 0.96418 1.00232 1.70096 1.09842 1.34401 1.43109 0.85435 0.78285 0.78428 0.78847 1.19695 1.20661 1.18742 1.22773 1.01214 0.98407 0.99710 1.22567 0.80957 0.95580 1.02524 1.87889 1.20934 1.82633 1.39343 0.92508 0.92487 0.92323 0.92459 0.92574 0.89649 0.91119 0.90188 0.90237 0.84152 0.95771 0.91964 0.92939 0.93332 0.99103 0.99044 0.92743 0.91409 0.89746 0.93725 0.87554 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.03 9.91 71.98 0.71 -1.31 16 2 C -0.12 -2.04 5.83 30.60 0.18 -1.86 16 3 C -0.11 -1.79 4.92 30.60 0.15 -1.64 16 4 C 0.09 1.80 2.40 30.63 0.07 1.88 16 5 H 0.05 1.22 7.37 -2.38 -0.02 1.21 16 6 C -0.13 -2.61 5.11 30.68 0.16 -2.45 16 7 C 0.08 1.85 2.89 45.03 0.13 1.98 16 8 H 0.08 1.87 7.81 -2.39 -0.02 1.85 16 9 N -0.68 -19.17 5.87 -490.96 -2.88 -22.05 16 10 C 0.07 2.49 5.49 86.30 0.47 2.96 16 11 C -0.09 -3.86 5.41 30.60 0.17 -3.70 16 12 C 0.03 1.41 4.97 29.85 0.15 1.55 16 13 C -0.54 -31.55 9.11 25.60 0.23 -31.31 16 14 H 0.06 3.29 7.74 -2.91 -0.02 3.27 16 15 C 0.00 -0.09 5.46 84.66 0.46 0.37 16 16 N -0.93 -57.52 13.29 21.45 0.28 -57.23 16 17 Si 0.97 44.71 29.54 68.60 2.03 46.73 16 18 H -0.27 -12.10 7.11 99.48 0.71 -11.40 16 19 H -0.28 -12.69 7.11 99.48 0.71 -11.98 16 20 H -0.26 -11.66 7.11 99.48 0.71 -10.95 16 21 C -0.18 -3.81 5.72 30.68 0.18 -3.64 16 22 C 0.06 1.25 6.58 72.01 0.47 1.72 16 23 O -0.39 -8.67 9.94 -148.98 -1.48 -10.15 16 24 H 0.06 0.72 8.14 -2.39 -0.02 0.70 16 25 H 0.06 0.72 8.14 -2.39 -0.02 0.70 16 26 H 0.06 0.73 8.14 -2.38 -0.02 0.71 16 27 H 0.06 1.08 7.82 -2.38 -0.02 1.06 16 28 H 0.06 0.97 8.14 -2.39 -0.02 0.95 16 29 H 0.09 1.27 8.14 -2.39 -0.02 1.25 16 30 H 0.07 1.16 8.14 -2.39 -0.02 1.14 16 31 H 0.08 1.45 8.14 -2.39 -0.02 1.43 16 32 H 0.08 1.62 8.14 -2.38 -0.02 1.60 16 33 H 0.34 9.18 5.81 -89.70 -0.52 8.66 16 34 H 0.02 0.83 7.40 -2.39 -0.02 0.81 16 35 H 0.06 2.20 8.06 -2.39 -0.02 2.18 16 36 H 0.05 2.22 8.14 -2.39 -0.02 2.20 16 37 H 0.05 1.97 8.14 -2.39 -0.02 1.95 16 38 H -0.01 -0.54 8.14 -2.39 -0.02 -0.56 16 39 H -0.01 -0.51 8.14 -2.39 -0.02 -0.53 16 40 H 0.26 15.20 8.31 -92.71 -0.77 14.43 16 41 H 0.07 1.52 7.40 -2.39 -0.02 1.50 16 42 H 0.08 1.61 8.14 -2.39 -0.02 1.59 16 43 H 0.04 0.96 6.43 -2.39 -0.02 0.95 16 44 H 0.11 1.86 8.14 -2.39 -0.02 1.84 16 Total: -1.00 -63.49 341.90 1.89 -61.60 By element: Atomic # 1 Polarization: 16.14 SS G_CDS: 0.41 Total: 16.55 kcal Atomic # 6 Polarization: -38.99 SS G_CDS: 3.54 Total: -35.46 kcal Atomic # 7 Polarization: -76.68 SS G_CDS: -2.60 Total: -79.28 kcal Atomic # 8 Polarization: -8.67 SS G_CDS: -1.48 Total: -10.15 kcal Atomic # 14 Polarization: 44.71 SS G_CDS: 2.03 Total: 46.73 kcal Total: -63.49 1.89 -61.60 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000134652900.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -42.513 kcal (2) G-P(sol) polarization free energy of solvation -63.491 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -106.004 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.893 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.598 kcal (6) G-S(sol) free energy of system = (1) + (5) -104.111 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.45 seconds