Wall clock time and date at job start Mon Mar 30 2020 06:36:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.53000 * 109.47037 * 2 1 4 4 C 1.53001 * 109.47037 * 179.97438 * 3 2 1 5 5 H 1.08993 * 109.49073 * 54.96663 * 4 3 2 6 6 C 1.53090 * 109.47804 * 174.99759 * 4 3 2 7 7 C 1.53176 * 109.16134 * 177.58964 * 6 4 3 8 8 H 1.08997 * 109.55040 * 62.88535 * 7 6 4 9 9 N 1.46905 * 109.54546 * 183.15181 * 7 6 4 10 10 C 1.46902 * 111.00203 * 204.99844 * 9 7 6 11 11 C 1.52998 * 109.46947 * 179.97438 * 10 9 7 12 12 C 1.53004 * 109.46878 * 180.02562 * 11 10 9 13 13 C 1.50703 * 109.46971 * 179.97438 * 12 11 10 14 14 H 1.07994 * 120.00003 * 0.02562 * 13 12 11 15 15 C 1.37877 * 119.99677 * 179.97438 * 13 12 11 16 16 N 1.31514 * 120.00250 * 0.02562 * 15 13 12 17 17 Si 1.86793 * 119.99696 * 180.02562 * 15 13 12 18 18 H 1.48500 * 109.47601 * 0.02562 * 17 15 13 19 19 H 1.48504 * 109.47407 * 120.00220 * 17 15 13 20 20 H 1.48501 * 109.46997 * 239.99788 * 17 15 13 21 21 C 1.53175 * 109.03666 * 303.01424 * 7 6 4 22 22 C 1.53092 * 109.16179 * 56.98460 * 21 7 6 23 23 O 1.42900 * 109.47724 * 294.93328 * 4 3 2 24 24 H 1.08998 * 109.46929 * 180.02562 * 1 2 3 25 25 H 1.08992 * 109.47322 * 300.00410 * 1 2 3 26 26 H 1.09002 * 109.46860 * 60.00993 * 1 2 3 27 27 H 1.09003 * 109.47682 * 239.99263 * 2 1 3 28 28 H 1.09002 * 109.46860 * 119.99007 * 2 1 3 29 29 H 1.08995 * 109.47165 * 59.99167 * 3 2 1 30 30 H 1.09002 * 109.46485 * 299.99237 * 3 2 1 31 31 H 1.09001 * 109.52724 * 57.68484 * 6 4 3 32 32 H 1.08998 * 109.57540 * 297.52645 * 6 4 3 33 33 H 1.00903 * 110.99415 * 328.95300 * 9 7 6 34 34 H 1.09001 * 109.46964 * 299.99771 * 10 9 7 35 35 H 1.09006 * 109.46697 * 59.99995 * 10 9 7 36 36 H 1.09001 * 109.47258 * 299.99782 * 11 10 9 37 37 H 1.08992 * 109.47159 * 60.00012 * 11 10 9 38 38 H 1.09001 * 109.46911 * 299.99888 * 12 11 10 39 39 H 1.08999 * 109.47241 * 59.99631 * 12 11 10 40 40 H 0.97002 * 120.00124 * 180.02562 * 16 15 13 41 41 H 1.09006 * 109.52647 * 176.88761 * 21 7 6 42 42 H 1.08998 * 109.52537 * 297.07653 * 21 7 6 43 43 H 1.08998 * 109.48147 * 182.40843 * 22 21 7 44 44 H 1.09001 * 109.49189 * 62.37485 * 22 21 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 3.5700 1.4425 0.0006 5 1 3.9340 0.8526 -0.8404 6 6 4.0805 2.8803 -0.1252 7 6 5.6110 2.8776 -0.0632 8 1 6.0094 2.3187 -0.9100 9 7 6.1071 4.2596 -0.1074 10 6 7.4772 4.3106 -0.6351 11 6 7.9579 5.7628 -0.6664 12 6 9.3846 5.8159 -1.2166 13 6 9.8578 7.2464 -1.2481 14 1 9.2064 8.0382 -0.9091 15 6 11.1229 7.5439 -1.7086 16 7 11.9164 6.5795 -2.1208 17 14 11.7098 9.3168 -1.7469 18 1 10.6362 10.2050 -1.2331 19 1 12.9177 9.4570 -0.8944 20 1 12.0424 9.6981 -3.1431 21 6 6.0570 2.2147 1.2437 22 6 5.4701 0.8027 1.3167 23 8 4.0460 0.8747 1.2226 24 1 -0.3633 -1.0277 0.0005 25 1 -0.3633 0.5138 0.8899 26 1 -0.3633 0.5137 -0.8901 27 1 1.8935 -0.5139 -0.8899 28 1 1.8933 -0.5137 0.8901 29 1 1.6766 1.9564 0.8899 30 1 1.6767 1.9562 -0.8901 31 1 3.6839 3.4807 0.6935 32 1 3.7552 3.3014 -1.0765 33 1 5.4898 4.8482 -0.6465 34 1 8.1353 3.7234 0.0054 35 1 7.4929 3.9011 -1.6452 36 1 7.2997 6.3496 -1.3071 37 1 7.9420 6.1726 0.3434 38 1 10.0430 5.2290 -0.5762 39 1 9.4000 5.4061 -2.2265 40 1 12.8065 6.7888 -2.4445 41 1 7.1453 2.1587 1.2710 42 1 5.7003 2.8017 2.0900 43 1 5.7489 0.3417 2.2643 44 1 5.8590 0.2041 0.4929 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000134652918.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:36:17 Heat of formation + Delta-G solvation = -89.119820 kcal Electronic energy + Delta-G solvation = -18904.302875 eV Core-core repulsion = 16047.793905 eV Total energy + Delta-G solvation = -2856.508970 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 255.194 amu Computer time = 0.39 seconds Orbital eigenvalues (eV) -39.79222 -36.59333 -35.16056 -33.90064 -32.20651 -31.38943 -30.03007 -27.33554 -25.84421 -23.80426 -23.02055 -21.91697 -21.08038 -20.42048 -19.76952 -16.68213 -16.29043 -16.12585 -15.53239 -15.09445 -14.81776 -14.71454 -14.42131 -13.99020 -13.76376 -13.37777 -12.94119 -12.79163 -12.41902 -12.26092 -11.91400 -11.71234 -11.59455 -11.52346 -11.17742 -11.15116 -10.90017 -10.81534 -10.71520 -10.54803 -10.46811 -10.26974 -9.70609 -9.67889 -9.28571 -9.02331 -8.34145 -8.19394 -5.99012 -4.00980 3.31735 3.39046 3.43742 3.62588 4.16841 4.46336 4.49670 4.69547 4.78309 4.83550 4.94363 5.01271 5.06163 5.19605 5.29088 5.36834 5.41271 5.46073 5.46518 5.54395 5.60852 5.65955 5.79072 5.79635 5.81028 5.90453 5.96776 5.98269 6.09280 6.11587 6.27276 6.34757 6.72294 6.78335 7.11830 7.14296 7.35011 7.62677 7.69604 7.84220 8.01522 8.44929 9.06487 9.63019 11.12501 Molecular weight = 255.19amu Principal moments of inertia in cm(-1) A = 0.052888 B = 0.002846 C = 0.002770 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 529.295636 B = 9837.479377 C =10105.854080 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C -0.123 4.123 3 C -0.111 4.111 4 C 0.094 3.906 5 H 0.055 0.945 6 C -0.151 4.151 7 C 0.085 3.915 8 H 0.041 0.959 9 N -0.686 5.686 10 C 0.059 3.941 11 C -0.107 4.107 12 C 0.022 3.978 13 C -0.517 4.517 14 H 0.056 0.944 15 C 0.054 3.946 16 N -0.897 5.897 17 Si 0.892 3.108 18 H -0.273 1.273 19 H -0.284 1.284 20 H -0.284 1.284 21 C -0.144 4.144 22 C 0.062 3.938 23 O -0.378 6.378 24 H 0.052 0.948 25 H 0.054 0.946 26 H 0.052 0.948 27 H 0.058 0.942 28 H 0.069 0.931 29 H 0.071 0.929 30 H 0.074 0.926 31 H 0.080 0.920 32 H 0.070 0.930 33 H 0.338 0.662 34 H 0.066 0.934 35 H 0.023 0.977 36 H 0.044 0.956 37 H 0.056 0.944 38 H 0.016 0.984 39 H 0.013 0.987 40 H 0.259 0.741 41 H 0.073 0.927 42 H 0.078 0.922 43 H 0.094 0.906 44 H 0.047 0.953 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.573 -13.559 4.178 24.175 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.160 4.160 3 C -0.149 4.149 4 C 0.036 3.964 5 H 0.073 0.927 6 C -0.189 4.189 7 C -0.025 4.025 8 H 0.059 0.941 9 N -0.317 5.317 10 C -0.069 4.069 11 C -0.145 4.145 12 C -0.016 4.016 13 C -0.556 4.556 14 H 0.074 0.926 15 C -0.146 4.146 16 N -0.536 5.536 17 Si 0.720 3.280 18 H -0.197 1.197 19 H -0.210 1.210 20 H -0.211 1.211 21 C -0.182 4.182 22 C -0.015 4.015 23 O -0.298 6.298 24 H 0.071 0.929 25 H 0.073 0.927 26 H 0.071 0.929 27 H 0.077 0.923 28 H 0.088 0.912 29 H 0.090 0.910 30 H 0.093 0.907 31 H 0.099 0.901 32 H 0.088 0.912 33 H 0.156 0.844 34 H 0.085 0.915 35 H 0.041 0.959 36 H 0.063 0.937 37 H 0.074 0.926 38 H 0.034 0.966 39 H 0.031 0.969 40 H 0.069 0.931 41 H 0.092 0.908 42 H 0.097 0.903 43 H 0.112 0.888 44 H 0.065 0.935 Dipole moment (debyes) X Y Z Total from point charges -19.319 -13.643 4.905 24.154 hybrid contribution 0.638 0.927 -1.284 1.707 sum -18.681 -12.716 3.621 22.887 Atomic orbital electron populations 1.21781 0.96012 1.01502 1.01704 1.21486 0.95505 0.96615 1.02422 1.21639 0.92709 0.97691 1.02817 1.22080 0.94504 0.92699 0.87162 0.92677 1.22419 0.95664 0.97787 1.03077 1.21513 0.93551 0.90636 0.96787 0.94130 1.60588 1.04289 1.07948 1.58856 1.22175 0.88262 0.99813 0.96664 1.21621 0.99439 0.92469 1.00942 1.19072 0.89595 0.97017 0.95918 1.21297 0.99226 0.93070 1.41997 0.92610 1.25041 0.96895 0.97205 0.95484 1.69978 1.08419 1.31608 1.43634 0.86533 0.78712 0.85147 0.77598 1.19721 1.21012 1.21054 1.22213 1.01384 0.95907 0.98713 1.22592 0.80784 0.96221 1.01876 1.87901 1.21131 1.82344 1.38390 0.92873 0.92728 0.92905 0.92341 0.91194 0.90991 0.90706 0.90098 0.91168 0.84387 0.91541 0.95861 0.93684 0.92551 0.96602 0.96853 0.93100 0.90841 0.90327 0.88796 0.93519 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.03 9.91 37.16 0.37 -0.66 16 2 C -0.12 -0.97 5.83 -26.73 -0.16 -1.12 16 3 C -0.11 -0.93 4.92 -26.73 -0.13 -1.06 16 4 C 0.09 0.93 2.64 -26.68 -0.07 0.86 16 5 H 0.06 0.54 8.14 -51.93 -0.42 0.12 16 6 C -0.15 -1.60 4.69 -26.59 -0.12 -1.73 16 7 C 0.09 1.07 2.58 -67.53 -0.17 0.90 16 8 H 0.04 0.53 7.80 -51.93 -0.41 0.13 16 9 N -0.69 -10.16 6.31 -106.53 -0.67 -10.83 16 10 C 0.06 1.04 5.49 -3.82 -0.02 1.02 16 11 C -0.11 -2.25 5.41 -26.73 -0.14 -2.39 16 12 C 0.02 0.57 4.97 -27.88 -0.14 0.43 16 13 C -0.52 -14.94 9.11 -34.44 -0.31 -15.25 16 14 H 0.06 1.57 7.74 -52.49 -0.41 1.17 16 15 C 0.05 1.59 5.46 -17.82 -0.10 1.49 16 16 N -0.90 -27.31 13.29 55.43 0.74 -26.58 16 17 Si 0.89 21.94 29.54 -169.99 -5.02 16.92 16 18 H -0.27 -6.56 7.11 56.52 0.40 -6.16 16 19 H -0.28 -6.90 7.11 56.52 0.40 -6.50 16 20 H -0.28 -6.90 7.11 56.52 0.40 -6.49 16 21 C -0.14 -1.74 5.63 -26.59 -0.15 -1.89 16 22 C 0.06 0.65 6.84 37.21 0.25 0.91 16 23 O -0.38 -4.31 9.94 -35.23 -0.35 -4.67 16 24 H 0.05 0.33 8.14 -51.93 -0.42 -0.10 16 25 H 0.05 0.36 8.14 -51.93 -0.42 -0.06 16 26 H 0.05 0.33 8.14 -51.93 -0.42 -0.09 16 27 H 0.06 0.44 8.14 -51.93 -0.42 0.02 16 28 H 0.07 0.62 7.82 -51.93 -0.41 0.21 16 29 H 0.07 0.63 8.14 -51.93 -0.42 0.21 16 30 H 0.07 0.54 8.14 -51.93 -0.42 0.12 16 31 H 0.08 0.91 8.14 -51.93 -0.42 0.49 16 32 H 0.07 0.67 8.14 -51.93 -0.42 0.25 16 33 H 0.34 4.68 8.36 -39.29 -0.33 4.35 16 34 H 0.07 1.20 7.54 -51.93 -0.39 0.80 16 35 H 0.02 0.41 8.06 -51.93 -0.42 -0.01 16 36 H 0.04 0.92 8.14 -51.93 -0.42 0.50 16 37 H 0.06 1.21 8.14 -51.93 -0.42 0.79 16 38 H 0.02 0.44 8.14 -51.93 -0.42 0.01 16 39 H 0.01 0.36 8.14 -51.93 -0.42 -0.06 16 40 H 0.26 7.42 8.31 -40.82 -0.34 7.08 16 41 H 0.07 0.93 7.58 -51.93 -0.39 0.53 16 42 H 0.08 1.02 8.14 -51.93 -0.42 0.60 16 43 H 0.09 0.85 8.14 -51.93 -0.42 0.43 16 44 H 0.05 0.46 8.14 -51.93 -0.42 0.04 16 LS Contribution 347.38 15.07 5.23 5.23 Total: -1.00 -30.41 347.38 -9.62 -40.03 By element: Atomic # 1 Polarization: 7.03 SS G_CDS: -8.65 Total: -1.62 kcal Atomic # 6 Polarization: -17.59 SS G_CDS: -0.90 Total: -18.49 kcal Atomic # 7 Polarization: -37.47 SS G_CDS: 0.06 Total: -37.41 kcal Atomic # 8 Polarization: -4.31 SS G_CDS: -0.35 Total: -4.67 kcal Atomic # 14 Polarization: 21.94 SS G_CDS: -5.02 Total: 16.92 kcal Total LS contribution 5.23 Total: 5.23 kcal Total: -30.41 -9.62 -40.03 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000134652918.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -49.086 kcal (2) G-P(sol) polarization free energy of solvation -30.414 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -79.500 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.620 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.034 kcal (6) G-S(sol) free energy of system = (1) + (5) -89.120 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.39 seconds