Wall clock time and date at job start Mon Mar 30 2020 06:36:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.53000 * 109.47037 * 2 1 4 4 C 1.53001 * 109.47037 * 179.97438 * 3 2 1 5 5 H 1.08993 * 109.49073 * 54.96663 * 4 3 2 6 6 C 1.53090 * 109.47804 * 174.99759 * 4 3 2 7 7 C 1.53176 * 109.16134 * 177.58964 * 6 4 3 8 8 H 1.08997 * 109.55040 * 62.88535 * 7 6 4 9 9 N 1.46905 * 109.54546 * 183.15181 * 7 6 4 10 10 C 1.46902 * 111.00203 * 204.99844 * 9 7 6 11 11 C 1.52998 * 109.46947 * 179.97438 * 10 9 7 12 12 C 1.53004 * 109.46878 * 180.02562 * 11 10 9 13 13 C 1.50703 * 109.46971 * 179.97438 * 12 11 10 14 14 H 1.07994 * 120.00003 * 0.02562 * 13 12 11 15 15 C 1.37877 * 119.99677 * 179.97438 * 13 12 11 16 16 N 1.31514 * 120.00250 * 0.02562 * 15 13 12 17 17 Si 1.86793 * 119.99696 * 180.02562 * 15 13 12 18 18 H 1.48500 * 109.47601 * 0.02562 * 17 15 13 19 19 H 1.48504 * 109.47407 * 120.00220 * 17 15 13 20 20 H 1.48501 * 109.46997 * 239.99788 * 17 15 13 21 21 C 1.53175 * 109.03666 * 303.01424 * 7 6 4 22 22 C 1.53092 * 109.16179 * 56.98460 * 21 7 6 23 23 O 1.42900 * 109.47724 * 294.93328 * 4 3 2 24 24 H 1.08998 * 109.46929 * 180.02562 * 1 2 3 25 25 H 1.08992 * 109.47322 * 300.00410 * 1 2 3 26 26 H 1.09002 * 109.46860 * 60.00993 * 1 2 3 27 27 H 1.09003 * 109.47682 * 239.99263 * 2 1 3 28 28 H 1.09002 * 109.46860 * 119.99007 * 2 1 3 29 29 H 1.08995 * 109.47165 * 59.99167 * 3 2 1 30 30 H 1.09002 * 109.46485 * 299.99237 * 3 2 1 31 31 H 1.09001 * 109.52724 * 57.68484 * 6 4 3 32 32 H 1.08998 * 109.57540 * 297.52645 * 6 4 3 33 33 H 1.00903 * 110.99415 * 328.95300 * 9 7 6 34 34 H 1.09001 * 109.46964 * 299.99771 * 10 9 7 35 35 H 1.09006 * 109.46697 * 59.99995 * 10 9 7 36 36 H 1.09001 * 109.47258 * 299.99782 * 11 10 9 37 37 H 1.08992 * 109.47159 * 60.00012 * 11 10 9 38 38 H 1.09001 * 109.46911 * 299.99888 * 12 11 10 39 39 H 1.08999 * 109.47241 * 59.99631 * 12 11 10 40 40 H 0.97002 * 120.00124 * 180.02562 * 16 15 13 41 41 H 1.09006 * 109.52647 * 176.88761 * 21 7 6 42 42 H 1.08998 * 109.52537 * 297.07653 * 21 7 6 43 43 H 1.08998 * 109.48147 * 182.40843 * 22 21 7 44 44 H 1.09001 * 109.49189 * 62.37485 * 22 21 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 3.5700 1.4425 0.0006 5 1 3.9340 0.8526 -0.8404 6 6 4.0805 2.8803 -0.1252 7 6 5.6110 2.8776 -0.0632 8 1 6.0094 2.3187 -0.9100 9 7 6.1071 4.2596 -0.1074 10 6 7.4772 4.3106 -0.6351 11 6 7.9579 5.7628 -0.6664 12 6 9.3846 5.8159 -1.2166 13 6 9.8578 7.2464 -1.2481 14 1 9.2064 8.0382 -0.9091 15 6 11.1229 7.5439 -1.7086 16 7 11.9164 6.5795 -2.1208 17 14 11.7098 9.3168 -1.7469 18 1 10.6362 10.2050 -1.2331 19 1 12.9177 9.4570 -0.8944 20 1 12.0424 9.6981 -3.1431 21 6 6.0570 2.2147 1.2437 22 6 5.4701 0.8027 1.3167 23 8 4.0460 0.8747 1.2226 24 1 -0.3633 -1.0277 0.0005 25 1 -0.3633 0.5138 0.8899 26 1 -0.3633 0.5137 -0.8901 27 1 1.8935 -0.5139 -0.8899 28 1 1.8933 -0.5137 0.8901 29 1 1.6766 1.9564 0.8899 30 1 1.6767 1.9562 -0.8901 31 1 3.6839 3.4807 0.6935 32 1 3.7552 3.3014 -1.0765 33 1 5.4898 4.8482 -0.6465 34 1 8.1353 3.7234 0.0054 35 1 7.4929 3.9011 -1.6452 36 1 7.2997 6.3496 -1.3071 37 1 7.9420 6.1726 0.3434 38 1 10.0430 5.2290 -0.5762 39 1 9.4000 5.4061 -2.2265 40 1 12.8065 6.7888 -2.4445 41 1 7.1453 2.1587 1.2710 42 1 5.7003 2.8017 2.0900 43 1 5.7489 0.3417 2.2643 44 1 5.8590 0.2041 0.4929 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000134652918.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:36:17 Heat of formation + Delta-G solvation = -107.349804 kcal Electronic energy + Delta-G solvation = -18905.093386 eV Core-core repulsion = 16047.793905 eV Total energy + Delta-G solvation = -2857.299481 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 255.194 amu Computer time = 0.48 seconds Orbital eigenvalues (eV) -40.67954 -37.83311 -35.93423 -35.63957 -33.91667 -32.16743 -31.54850 -28.46062 -27.32983 -24.89441 -24.37944 -23.00415 -22.01225 -21.79560 -20.92661 -18.50090 -17.48225 -17.07307 -16.71949 -16.54680 -16.02346 -15.82518 -15.40667 -15.35228 -14.71289 -14.54639 -14.29506 -13.75508 -13.60097 -13.50370 -13.41938 -13.03475 -12.81196 -12.57136 -12.45696 -12.30941 -12.24873 -12.15135 -11.85445 -11.61963 -11.50871 -11.47899 -11.43506 -11.22964 -11.00506 -10.57535 -10.45681 -9.42350 -8.21773 -6.32875 1.39180 1.39642 1.53319 2.39902 2.83375 3.08795 3.11300 3.62677 3.88544 3.91366 4.14240 4.14675 4.19835 4.22863 4.31006 4.33458 4.37577 4.52143 4.58765 4.67864 4.71848 4.77306 4.81361 4.87406 4.93650 4.98697 5.03663 5.07657 5.12284 5.16451 5.22100 5.29037 5.32673 5.40758 5.50785 5.51220 5.72653 5.83986 6.05131 6.25434 6.30599 6.46515 6.84164 7.36475 8.90402 Molecular weight = 255.19amu Principal moments of inertia in cm(-1) A = 0.052888 B = 0.002846 C = 0.002770 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 529.295636 B = 9837.479377 C =10105.854080 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C -0.121 4.121 3 C -0.108 4.108 4 C 0.092 3.908 5 H 0.059 0.941 6 C -0.144 4.144 7 C 0.083 3.917 8 H 0.039 0.961 9 N -0.687 5.687 10 C 0.074 3.926 11 C -0.092 4.092 12 C 0.025 3.975 13 C -0.542 4.542 14 H 0.059 0.941 15 C -0.003 4.003 16 N -0.934 5.934 17 Si 0.967 3.033 18 H -0.262 1.262 19 H -0.278 1.278 20 H -0.277 1.277 21 C -0.142 4.142 22 C 0.065 3.935 23 O -0.390 6.390 24 H 0.057 0.943 25 H 0.053 0.947 26 H 0.059 0.941 27 H 0.061 0.939 28 H 0.057 0.943 29 H 0.066 0.934 30 H 0.089 0.911 31 H 0.075 0.925 32 H 0.083 0.917 33 H 0.346 0.654 34 H 0.059 0.941 35 H 0.022 0.978 36 H 0.051 0.949 37 H 0.051 0.949 38 H -0.010 1.010 39 H -0.009 1.009 40 H 0.264 0.736 41 H 0.064 0.936 42 H 0.067 0.933 43 H 0.107 0.893 44 H 0.054 0.946 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -20.849 -13.117 4.086 24.969 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.159 4.159 3 C -0.145 4.145 4 C 0.034 3.966 5 H 0.077 0.923 6 C -0.182 4.182 7 C -0.027 4.027 8 H 0.057 0.943 9 N -0.318 5.318 10 C -0.055 4.055 11 C -0.130 4.130 12 C -0.013 4.013 13 C -0.580 4.580 14 H 0.078 0.922 15 C -0.201 4.201 16 N -0.574 5.574 17 Si 0.791 3.209 18 H -0.186 1.186 19 H -0.203 1.203 20 H -0.202 1.202 21 C -0.180 4.180 22 C -0.012 4.012 23 O -0.310 6.310 24 H 0.076 0.924 25 H 0.072 0.928 26 H 0.078 0.922 27 H 0.080 0.920 28 H 0.075 0.925 29 H 0.085 0.915 30 H 0.107 0.893 31 H 0.093 0.907 32 H 0.102 0.898 33 H 0.164 0.836 34 H 0.078 0.922 35 H 0.040 0.960 36 H 0.070 0.930 37 H 0.070 0.930 38 H 0.009 0.991 39 H 0.009 0.991 40 H 0.073 0.927 41 H 0.083 0.917 42 H 0.086 0.914 43 H 0.125 0.875 44 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges -20.618 -13.207 4.819 24.955 hybrid contribution 1.034 0.748 -1.253 1.789 sum -19.584 -12.459 3.565 23.484 Atomic orbital electron populations 1.21767 0.95095 1.01971 1.02008 1.21459 0.96305 0.96158 1.01948 1.21642 0.91486 0.98124 1.03268 1.22194 0.95516 0.92054 0.86825 0.92266 1.22363 0.93830 0.98394 1.03587 1.21597 0.95044 0.89119 0.96901 0.94327 1.60514 1.03023 1.09670 1.58608 1.21859 0.89899 0.97124 0.96656 1.21371 0.96380 0.95024 1.00213 1.18976 0.92377 0.95576 0.94344 1.21724 0.99843 0.94222 1.42233 0.92244 1.26017 0.97039 1.02169 0.94835 1.70104 1.08930 1.34132 1.44278 0.85367 0.78333 0.79214 0.77943 1.18606 1.20328 1.20229 1.22188 1.00882 0.96943 0.98028 1.22623 0.80445 0.95138 1.03001 1.87899 1.21440 1.82439 1.39188 0.92374 0.92799 0.92220 0.92032 0.92454 0.91479 0.89278 0.90678 0.89802 0.83558 0.92224 0.95971 0.93011 0.92989 0.99114 0.99081 0.92742 0.91739 0.91376 0.87454 0.92760 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.77 9.91 71.98 0.71 -1.06 16 2 C -0.12 -1.72 5.83 30.59 0.18 -1.54 16 3 C -0.11 -1.61 4.92 30.59 0.15 -1.45 16 4 C 0.09 1.68 2.64 30.62 0.08 1.76 16 5 H 0.06 1.04 8.14 -2.39 -0.02 1.02 16 6 C -0.14 -2.80 4.69 30.68 0.14 -2.66 16 7 C 0.08 2.00 2.58 45.03 0.12 2.12 16 8 H 0.04 0.97 7.80 -2.39 -0.02 0.95 16 9 N -0.69 -19.68 6.31 -490.94 -3.10 -22.78 16 10 C 0.07 2.58 5.49 86.30 0.47 3.06 16 11 C -0.09 -3.88 5.41 30.59 0.17 -3.72 16 12 C 0.02 1.34 4.97 29.85 0.15 1.49 16 13 C -0.54 -31.55 9.11 25.60 0.23 -31.32 16 14 H 0.06 3.33 7.74 -2.91 -0.02 3.31 16 15 C 0.00 -0.18 5.46 84.65 0.46 0.28 16 16 N -0.93 -57.61 13.29 21.45 0.28 -57.33 16 17 Si 0.97 44.85 29.54 68.60 2.03 46.87 16 18 H -0.26 -11.61 7.11 99.48 0.71 -10.90 16 19 H -0.28 -12.53 7.11 99.48 0.71 -11.82 16 20 H -0.28 -12.43 7.11 99.48 0.71 -11.72 16 21 C -0.14 -3.35 5.63 30.68 0.17 -3.17 16 22 C 0.06 1.28 6.84 72.01 0.49 1.77 16 23 O -0.39 -8.38 9.94 -148.98 -1.48 -9.86 16 24 H 0.06 0.62 8.14 -2.39 -0.02 0.60 16 25 H 0.05 0.64 8.14 -2.39 -0.02 0.62 16 26 H 0.06 0.62 8.14 -2.39 -0.02 0.60 16 27 H 0.06 0.83 8.14 -2.39 -0.02 0.81 16 28 H 0.06 0.96 7.82 -2.39 -0.02 0.94 16 29 H 0.07 1.07 8.14 -2.39 -0.02 1.05 16 30 H 0.09 1.08 8.14 -2.39 -0.02 1.06 16 31 H 0.07 1.58 8.14 -2.39 -0.02 1.56 16 32 H 0.08 1.41 8.14 -2.39 -0.02 1.39 16 33 H 0.35 9.05 8.36 -89.69 -0.75 8.30 16 34 H 0.06 2.17 7.54 -2.39 -0.02 2.15 16 35 H 0.02 0.78 8.06 -2.38 -0.02 0.76 16 36 H 0.05 2.10 8.14 -2.39 -0.02 2.08 16 37 H 0.05 2.23 8.14 -2.39 -0.02 2.21 16 38 H -0.01 -0.56 8.14 -2.39 -0.02 -0.57 16 39 H -0.01 -0.53 8.14 -2.39 -0.02 -0.55 16 40 H 0.26 15.18 8.31 -92.71 -0.77 14.41 16 41 H 0.06 1.62 7.58 -2.38 -0.02 1.60 16 42 H 0.07 1.74 8.14 -2.39 -0.02 1.72 16 43 H 0.11 1.80 8.14 -2.39 -0.02 1.78 16 44 H 0.05 0.99 8.14 -2.39 -0.02 0.97 16 Total: -1.00 -64.66 347.38 1.44 -63.22 By element: Atomic # 1 Polarization: 14.15 SS G_CDS: 0.17 Total: 14.32 kcal Atomic # 6 Polarization: -37.97 SS G_CDS: 3.53 Total: -34.44 kcal Atomic # 7 Polarization: -77.30 SS G_CDS: -2.81 Total: -80.11 kcal Atomic # 8 Polarization: -8.38 SS G_CDS: -1.48 Total: -9.86 kcal Atomic # 14 Polarization: 44.85 SS G_CDS: 2.03 Total: 46.87 kcal Total: -64.66 1.44 -63.22 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000134652918.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -44.129 kcal (2) G-P(sol) polarization free energy of solvation -64.657 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -108.786 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.436 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.221 kcal (6) G-S(sol) free energy of system = (1) + (5) -107.350 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.48 seconds