Wall clock time and date at job start Mon Mar 30 2020 07:00:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 C 1.53009 * 109.46672 * 2 1 4 4 C 1.52999 * 109.47353 * 119.99890 * 2 1 3 5 5 N 1.46892 * 109.47012 * 64.94066 * 4 2 1 6 6 C 1.46898 * 111.00263 * 198.92394 * 5 4 2 7 7 C 1.50698 * 109.47250 * 72.18196 * 6 5 4 8 8 H 1.07994 * 120.00096 * 2.86488 * 7 6 5 9 9 C 1.37880 * 119.99918 * 182.85958 * 7 6 5 10 10 N 1.31506 * 120.00225 * 0.02562 * 9 7 6 11 11 Si 1.86804 * 119.99763 * 180.02562 * 9 7 6 12 12 H 1.48503 * 109.47205 * 90.00125 * 11 9 7 13 13 H 1.48499 * 109.47034 * 209.99964 * 11 9 7 14 14 H 1.48501 * 109.47004 * 329.99878 * 11 9 7 15 15 C 1.46903 * 111.00263 * 74.96769 * 5 4 2 16 16 C 1.52996 * 109.47711 * 189.99988 * 15 5 4 17 17 C 1.52996 * 109.47339 * 180.02562 * 16 15 5 18 18 C 1.52998 * 109.47145 * 59.99609 * 17 16 15 19 19 O 1.42900 * 109.46771 * 60.00264 * 18 17 16 20 20 C 1.52999 * 109.47678 * 300.00455 * 18 17 16 21 21 C 1.52996 * 109.47204 * 59.99581 * 20 18 17 22 22 H 1.09007 * 109.46769 * 184.33182 * 1 2 3 23 23 H 1.09001 * 109.47525 * 304.33155 * 1 2 3 24 24 H 1.09001 * 109.47124 * 64.33457 * 1 2 3 25 25 H 1.08994 * 109.47589 * 240.00411 * 2 1 3 26 26 H 1.09001 * 109.46664 * 179.97438 * 3 2 1 27 27 H 1.08998 * 109.47127 * 299.99856 * 3 2 1 28 28 H 1.09004 * 109.47043 * 60.00416 * 3 2 1 29 29 H 1.09005 * 109.46870 * 304.94106 * 4 2 1 30 30 H 1.08993 * 109.47240 * 184.94692 * 4 2 1 31 31 H 1.08999 * 109.47683 * 192.18667 * 6 5 4 32 32 H 1.09000 * 109.46964 * 312.18330 * 6 5 4 33 33 H 0.97003 * 120.00726 * 180.02562 * 10 9 7 34 34 H 1.09005 * 109.46962 * 310.00436 * 15 5 4 35 35 H 1.08995 * 109.46714 * 59.99717 * 16 15 5 36 36 H 1.08998 * 109.46646 * 300.00415 * 16 15 5 37 37 H 1.09005 * 109.46985 * 300.00234 * 17 16 15 38 38 H 1.08996 * 109.47548 * 179.97438 * 17 16 15 39 39 H 1.08997 * 109.47091 * 179.97438 * 18 17 16 40 40 H 0.96707 * 113.99824 * 179.97438 * 19 18 17 41 41 H 1.08995 * 109.47071 * 180.02562 * 20 18 17 42 42 H 1.09001 * 109.46604 * 300.00331 * 20 18 17 43 43 H 1.08996 * 109.47548 * 180.02562 * 21 20 18 44 44 H 1.09005 * 109.46985 * 60.00120 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0399 1.4426 0.0000 4 6 2.0400 -0.7212 1.2492 5 7 1.6502 -2.1363 1.1911 6 6 1.7110 -2.7543 2.5224 7 6 0.5733 -2.2411 3.3669 8 1 -0.1518 -1.5631 2.9417 9 6 0.4580 -2.6374 4.6825 10 7 1.3411 -3.4628 5.2004 11 14 -0.9528 -2.0019 5.7291 12 1 -2.1118 -2.9226 5.6095 13 1 -0.5225 -1.9295 7.1485 14 1 -1.3455 -0.6483 5.2612 15 6 2.4825 -2.8726 0.2303 16 6 1.8951 -4.2682 0.0110 17 6 2.7623 -5.0353 -0.9891 18 6 4.1846 -5.1612 -0.4394 19 8 4.1542 -5.8659 0.8034 20 6 4.7721 -3.7656 -0.2200 21 6 3.9049 -2.9986 0.7801 22 1 -0.3633 -1.0248 0.0776 23 1 -0.3634 0.5796 0.8486 24 1 -0.3633 0.4451 -0.9263 25 1 1.8933 -0.5137 -0.8899 26 1 3.1299 1.4426 0.0005 27 1 1.6765 1.9564 -0.8900 28 1 1.6765 1.9564 0.8901 29 1 1.6062 -0.2610 2.1370 30 1 3.1263 -0.6451 1.2946 31 1 1.6313 -3.8369 2.4245 32 1 2.6589 -2.5013 2.9974 33 1 1.2598 -3.7419 6.1259 34 1 2.5053 -2.3349 -0.7176 35 1 0.8817 -4.1784 -0.3801 36 1 1.8723 -4.8058 0.9589 37 1 2.7855 -4.4977 -1.9371 38 1 2.3441 -6.0296 -1.1450 39 1 4.8023 -5.7080 -1.1517 40 1 5.0236 -5.9833 1.2103 41 1 5.7855 -3.8554 0.1712 42 1 4.7952 -3.2281 -1.1680 43 1 4.3231 -2.0042 0.9361 44 1 3.8816 -3.5361 1.7281 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000157298807.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:00:28 Heat of formation + Delta-G solvation = -73.974171 kcal Electronic energy + Delta-G solvation = -20775.147464 eV Core-core repulsion = 17919.295259 eV Total energy + Delta-G solvation = -2855.852205 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 255.194 amu Computer time = 0.39 seconds Orbital eigenvalues (eV) -39.33697 -37.04830 -34.70651 -33.26905 -31.98582 -30.44732 -28.34229 -26.89066 -26.60432 -24.27514 -22.51144 -22.21662 -20.56270 -19.55884 -18.36356 -16.72919 -16.06519 -15.68206 -14.91946 -14.54115 -14.30729 -14.29073 -13.69602 -13.31745 -13.00541 -12.83760 -12.41035 -12.13758 -11.91049 -11.81380 -11.73712 -11.71666 -11.29971 -11.08163 -10.85994 -10.74195 -10.67290 -10.55374 -10.40492 -10.12452 -9.99440 -9.90779 -9.74472 -9.46839 -9.29181 -9.03751 -8.30829 -7.02345 -5.92384 -3.92657 3.36911 3.42838 3.46374 4.45953 4.51107 4.90535 5.02624 5.09605 5.22309 5.38931 5.42575 5.48158 5.58349 5.61933 5.70755 5.77265 5.85714 5.94736 5.99086 6.07505 6.09203 6.17188 6.19866 6.24907 6.33006 6.39174 6.51043 6.52496 6.63068 6.68315 6.70193 6.90776 6.96792 7.02387 7.07706 7.46818 7.53319 7.90893 7.94170 8.27595 8.37201 8.70643 9.16295 9.70703 11.17754 Molecular weight = 255.19amu Principal moments of inertia in cm(-1) A = 0.014782 B = 0.008288 C = 0.005953 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1893.753981 B = 3377.407018 C = 4702.195151 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.134 4.134 2 C -0.090 4.090 3 C -0.145 4.145 4 C 0.065 3.935 5 N -0.527 5.527 6 C 0.192 3.808 7 C -0.502 4.502 8 H 0.062 0.938 9 C 0.054 3.946 10 N -0.898 5.898 11 Si 0.893 3.107 12 H -0.281 1.281 13 H -0.289 1.289 14 H -0.275 1.275 15 C 0.090 3.910 16 C -0.107 4.107 17 C -0.109 4.109 18 C 0.106 3.894 19 O -0.556 6.556 20 C -0.145 4.145 21 C -0.149 4.149 22 H 0.072 0.928 23 H 0.047 0.953 24 H 0.034 0.966 25 H 0.059 0.941 26 H 0.046 0.954 27 H 0.047 0.953 28 H 0.053 0.947 29 H 0.080 0.920 30 H 0.019 0.981 31 H 0.035 0.965 32 H -0.008 1.008 33 H 0.259 0.741 34 H 0.061 0.939 35 H 0.062 0.938 36 H 0.080 0.920 37 H 0.068 0.932 38 H 0.064 0.936 39 H 0.044 0.956 40 H 0.371 0.629 41 H 0.055 0.945 42 H 0.063 0.937 43 H 0.053 0.947 44 H 0.079 0.921 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.970 1.451 -12.437 13.872 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.191 4.191 2 C -0.109 4.109 3 C -0.203 4.203 4 C -0.064 4.064 5 N -0.250 5.250 6 C 0.068 3.932 7 C -0.541 4.541 8 H 0.080 0.920 9 C -0.147 4.147 10 N -0.538 5.538 11 Si 0.721 3.279 12 H -0.208 1.208 13 H -0.215 1.215 14 H -0.200 1.200 15 C -0.020 4.020 16 C -0.144 4.144 17 C -0.147 4.147 18 C 0.047 3.953 19 O -0.361 6.361 20 C -0.184 4.184 21 C -0.188 4.188 22 H 0.091 0.909 23 H 0.066 0.934 24 H 0.053 0.947 25 H 0.077 0.923 26 H 0.066 0.934 27 H 0.066 0.934 28 H 0.072 0.928 29 H 0.099 0.901 30 H 0.037 0.963 31 H 0.053 0.947 32 H 0.010 0.990 33 H 0.069 0.931 34 H 0.080 0.920 35 H 0.081 0.919 36 H 0.099 0.901 37 H 0.086 0.914 38 H 0.083 0.917 39 H 0.062 0.938 40 H 0.217 0.783 41 H 0.074 0.926 42 H 0.082 0.918 43 H 0.072 0.928 44 H 0.098 0.902 Dipole moment (debyes) X Y Z Total from point charges 4.854 1.338 -12.543 13.516 hybrid contribution 0.870 0.399 1.080 1.443 sum 5.724 1.737 -11.463 12.930 Atomic orbital electron populations 1.21677 0.94931 1.03026 0.99489 1.21103 0.96630 0.94552 0.98641 1.21824 1.00272 0.96993 1.01187 1.22053 0.96482 0.90111 0.97719 1.62258 1.50799 1.00795 1.11103 1.19746 0.95687 0.95171 0.82641 1.21221 1.10499 1.27466 0.94899 0.92003 1.24970 0.96272 0.95481 0.97934 1.69963 1.35444 1.34121 1.14279 0.86588 0.82639 0.79257 0.79436 1.20765 1.21493 1.19974 1.21613 0.89923 0.94532 0.95900 1.21480 0.97924 0.94945 1.00083 1.21533 0.94000 1.00739 0.98455 1.21758 0.97099 0.90896 0.85562 1.86619 1.34324 1.77922 1.37193 1.22180 0.98853 0.97081 1.00248 1.22162 0.97056 0.99426 1.00143 0.90917 0.93372 0.94717 0.92278 0.93446 0.93361 0.92787 0.90146 0.96267 0.94725 0.99017 0.93149 0.92040 0.91879 0.90127 0.91380 0.91737 0.93779 0.78255 0.92576 0.91785 0.92794 0.90220 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.18 9.13 37.15 0.34 -1.84 16 2 C -0.09 -1.44 2.97 -90.62 -0.27 -1.71 16 3 C -0.14 -1.98 9.19 37.16 0.34 -1.63 16 4 C 0.06 1.25 4.10 -3.83 -0.02 1.24 16 5 N -0.53 -11.09 3.71 -228.09 -0.85 -11.94 16 6 C 0.19 4.96 3.45 -4.98 -0.02 4.94 16 7 C -0.50 -14.13 8.33 -34.44 -0.29 -14.42 16 8 H 0.06 1.74 7.77 -52.49 -0.41 1.33 16 9 C 0.05 1.55 5.46 -17.82 -0.10 1.46 16 10 N -0.90 -26.99 13.29 55.43 0.74 -26.25 16 11 Si 0.89 22.01 29.54 -169.99 -5.02 16.99 16 12 H -0.28 -6.90 7.11 56.52 0.40 -6.50 16 13 H -0.29 -7.07 7.11 56.52 0.40 -6.67 16 14 H -0.27 -6.65 7.11 56.52 0.40 -6.25 16 15 C 0.09 1.60 2.10 -67.71 -0.14 1.46 16 16 C -0.11 -1.89 5.02 -26.74 -0.13 -2.02 16 17 C -0.11 -1.54 5.66 -26.73 -0.15 -1.69 16 18 C 0.11 1.42 3.77 -26.73 -0.10 1.32 16 19 O -0.56 -8.52 11.97 -35.23 -0.42 -8.94 16 20 C -0.15 -1.94 5.64 -26.73 -0.15 -2.09 16 21 C -0.15 -2.55 4.38 -26.73 -0.12 -2.66 16 22 H 0.07 1.33 7.63 -51.93 -0.40 0.93 16 23 H 0.05 0.81 8.14 -51.93 -0.42 0.38 16 24 H 0.03 0.48 8.14 -51.93 -0.42 0.06 16 25 H 0.06 0.92 6.62 -51.93 -0.34 0.58 16 26 H 0.05 0.61 8.14 -51.93 -0.42 0.19 16 27 H 0.05 0.58 8.14 -51.93 -0.42 0.16 16 28 H 0.05 0.75 8.14 -51.93 -0.42 0.32 16 29 H 0.08 1.76 7.11 -51.93 -0.37 1.39 16 30 H 0.02 0.37 6.19 -51.93 -0.32 0.05 16 31 H 0.03 0.97 5.94 -51.93 -0.31 0.66 16 32 H -0.01 -0.22 7.15 -51.93 -0.37 -0.60 16 33 H 0.26 7.40 8.31 -40.82 -0.34 7.06 16 34 H 0.06 1.02 6.52 -51.93 -0.34 0.69 16 35 H 0.06 1.12 8.14 -51.93 -0.42 0.70 16 36 H 0.08 1.71 5.82 -51.93 -0.30 1.41 16 37 H 0.07 0.83 8.14 -51.93 -0.42 0.40 16 38 H 0.06 0.88 8.14 -51.93 -0.42 0.46 16 39 H 0.04 0.50 8.14 -51.93 -0.42 0.08 16 40 H 0.37 4.22 9.08 45.56 0.41 4.63 16 41 H 0.06 0.67 8.14 -51.93 -0.42 0.25 16 42 H 0.06 0.77 8.14 -51.93 -0.42 0.35 16 43 H 0.05 0.93 6.46 -51.93 -0.34 0.60 16 44 H 0.08 1.62 6.23 -51.93 -0.32 1.30 16 LS Contribution 329.41 15.07 4.96 4.96 Total: -1.00 -30.30 329.41 -8.58 -38.88 By element: Atomic # 1 Polarization: 11.14 SS G_CDS: -7.19 Total: 3.95 kcal Atomic # 6 Polarization: -16.86 SS G_CDS: -0.80 Total: -17.66 kcal Atomic # 7 Polarization: -38.08 SS G_CDS: -0.11 Total: -38.19 kcal Atomic # 8 Polarization: -8.52 SS G_CDS: -0.42 Total: -8.94 kcal Atomic # 14 Polarization: 22.01 SS G_CDS: -5.02 Total: 16.99 kcal Total LS contribution 4.96 Total: 4.96 kcal Total: -30.30 -8.58 -38.88 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000157298807.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -35.097 kcal (2) G-P(sol) polarization free energy of solvation -30.298 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -65.395 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.579 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.877 kcal (6) G-S(sol) free energy of system = (1) + (5) -73.974 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.39 seconds