Wall clock time and date at job start Mon Mar 30 2020 07:00:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 C 1.53009 * 109.46672 * 2 1 4 4 C 1.52999 * 109.47353 * 119.99890 * 2 1 3 5 5 N 1.46892 * 109.47012 * 64.94066 * 4 2 1 6 6 C 1.46898 * 111.00263 * 198.92394 * 5 4 2 7 7 C 1.50698 * 109.47250 * 72.18196 * 6 5 4 8 8 H 1.07994 * 120.00096 * 2.86488 * 7 6 5 9 9 C 1.37880 * 119.99918 * 182.85958 * 7 6 5 10 10 N 1.31506 * 120.00225 * 0.02562 * 9 7 6 11 11 Si 1.86804 * 119.99763 * 180.02562 * 9 7 6 12 12 H 1.48503 * 109.47205 * 90.00125 * 11 9 7 13 13 H 1.48499 * 109.47034 * 209.99964 * 11 9 7 14 14 H 1.48501 * 109.47004 * 329.99878 * 11 9 7 15 15 C 1.46903 * 111.00263 * 74.96769 * 5 4 2 16 16 C 1.52996 * 109.47711 * 189.99988 * 15 5 4 17 17 C 1.52996 * 109.47339 * 180.02562 * 16 15 5 18 18 C 1.52998 * 109.47145 * 59.99609 * 17 16 15 19 19 O 1.42900 * 109.46771 * 60.00264 * 18 17 16 20 20 C 1.52999 * 109.47678 * 300.00455 * 18 17 16 21 21 C 1.52996 * 109.47204 * 59.99581 * 20 18 17 22 22 H 1.09007 * 109.46769 * 184.33182 * 1 2 3 23 23 H 1.09001 * 109.47525 * 304.33155 * 1 2 3 24 24 H 1.09001 * 109.47124 * 64.33457 * 1 2 3 25 25 H 1.08994 * 109.47589 * 240.00411 * 2 1 3 26 26 H 1.09001 * 109.46664 * 179.97438 * 3 2 1 27 27 H 1.08998 * 109.47127 * 299.99856 * 3 2 1 28 28 H 1.09004 * 109.47043 * 60.00416 * 3 2 1 29 29 H 1.09005 * 109.46870 * 304.94106 * 4 2 1 30 30 H 1.08993 * 109.47240 * 184.94692 * 4 2 1 31 31 H 1.08999 * 109.47683 * 192.18667 * 6 5 4 32 32 H 1.09000 * 109.46964 * 312.18330 * 6 5 4 33 33 H 0.97003 * 120.00726 * 180.02562 * 10 9 7 34 34 H 1.09005 * 109.46962 * 310.00436 * 15 5 4 35 35 H 1.08995 * 109.46714 * 59.99717 * 16 15 5 36 36 H 1.08998 * 109.46646 * 300.00415 * 16 15 5 37 37 H 1.09005 * 109.46985 * 300.00234 * 17 16 15 38 38 H 1.08996 * 109.47548 * 179.97438 * 17 16 15 39 39 H 1.08997 * 109.47091 * 179.97438 * 18 17 16 40 40 H 0.96707 * 113.99824 * 179.97438 * 19 18 17 41 41 H 1.08995 * 109.47071 * 180.02562 * 20 18 17 42 42 H 1.09001 * 109.46604 * 300.00331 * 20 18 17 43 43 H 1.08996 * 109.47548 * 180.02562 * 21 20 18 44 44 H 1.09005 * 109.46985 * 60.00120 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0399 1.4426 0.0000 4 6 2.0400 -0.7212 1.2492 5 7 1.6502 -2.1363 1.1911 6 6 1.7110 -2.7543 2.5224 7 6 0.5733 -2.2411 3.3669 8 1 -0.1518 -1.5631 2.9417 9 6 0.4580 -2.6374 4.6825 10 7 1.3411 -3.4628 5.2004 11 14 -0.9528 -2.0019 5.7291 12 1 -2.1118 -2.9226 5.6095 13 1 -0.5225 -1.9295 7.1485 14 1 -1.3455 -0.6483 5.2612 15 6 2.4825 -2.8726 0.2303 16 6 1.8951 -4.2682 0.0110 17 6 2.7623 -5.0353 -0.9891 18 6 4.1846 -5.1612 -0.4394 19 8 4.1542 -5.8659 0.8034 20 6 4.7721 -3.7656 -0.2200 21 6 3.9049 -2.9986 0.7801 22 1 -0.3633 -1.0248 0.0776 23 1 -0.3634 0.5796 0.8486 24 1 -0.3633 0.4451 -0.9263 25 1 1.8933 -0.5137 -0.8899 26 1 3.1299 1.4426 0.0005 27 1 1.6765 1.9564 -0.8900 28 1 1.6765 1.9564 0.8901 29 1 1.6062 -0.2610 2.1370 30 1 3.1263 -0.6451 1.2946 31 1 1.6313 -3.8369 2.4245 32 1 2.6589 -2.5013 2.9974 33 1 1.2598 -3.7419 6.1259 34 1 2.5053 -2.3349 -0.7176 35 1 0.8817 -4.1784 -0.3801 36 1 1.8723 -4.8058 0.9589 37 1 2.7855 -4.4977 -1.9371 38 1 2.3441 -6.0296 -1.1450 39 1 4.8023 -5.7080 -1.1517 40 1 5.0236 -5.9833 1.2103 41 1 5.7855 -3.8554 0.1712 42 1 4.7952 -3.2281 -1.1680 43 1 4.3231 -2.0042 0.9361 44 1 3.8816 -3.5361 1.7281 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000157298807.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:00:27 Heat of formation + Delta-G solvation = -94.563074 kcal Electronic energy + Delta-G solvation = -20776.040266 eV Core-core repulsion = 17919.295259 eV Total energy + Delta-G solvation = -2856.745007 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 255.194 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -40.72180 -38.41435 -36.01373 -35.12564 -33.73831 -31.71118 -29.92396 -28.66671 -27.84702 -25.99758 -24.23741 -23.53891 -21.95667 -20.86027 -19.88003 -18.51996 -17.61113 -17.07033 -16.53080 -16.24381 -15.81498 -15.60422 -15.19168 -14.80236 -14.32966 -14.22874 -14.09711 -13.72671 -13.34274 -13.18948 -13.11310 -13.00704 -12.87821 -12.72274 -12.50461 -12.42115 -12.09374 -12.06175 -11.78798 -11.70714 -11.58682 -11.42322 -11.16935 -11.05314 -10.86368 -10.56887 -10.52224 -8.78137 -8.15131 -6.24693 1.38058 1.39785 1.50504 2.40780 3.15536 3.29835 3.53959 3.86423 3.88111 3.97145 4.17264 4.21743 4.30140 4.35759 4.43769 4.52447 4.61072 4.64569 4.73149 4.79606 4.90631 4.91165 4.98120 5.00314 5.09769 5.13325 5.14955 5.20254 5.24940 5.28803 5.31017 5.35959 5.45575 5.51730 5.58113 5.63119 5.69982 5.72717 6.17731 6.51913 6.80540 6.94257 6.97767 7.44266 8.94424 Molecular weight = 255.19amu Principal moments of inertia in cm(-1) A = 0.014782 B = 0.008288 C = 0.005953 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1893.753981 B = 3377.407018 C = 4702.195151 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.130 4.130 2 C -0.082 4.082 3 C -0.140 4.140 4 C 0.068 3.932 5 N -0.532 5.532 6 C 0.219 3.781 7 C -0.517 4.517 8 H 0.059 0.941 9 C 0.000 4.000 10 N -0.934 5.934 11 Si 0.962 3.038 12 H -0.275 1.275 13 H -0.283 1.283 14 H -0.265 1.265 15 C 0.089 3.911 16 C -0.102 4.102 17 C -0.106 4.106 18 C 0.102 3.898 19 O -0.587 6.587 20 C -0.137 4.137 21 C -0.142 4.142 22 H 0.046 0.954 23 H 0.035 0.965 24 H 0.064 0.936 25 H 0.073 0.927 26 H 0.055 0.945 27 H 0.072 0.928 28 H 0.046 0.954 29 H 0.046 0.954 30 H 0.020 0.980 31 H 0.003 0.997 32 H -0.043 1.043 33 H 0.261 0.739 34 H 0.089 0.911 35 H 0.056 0.944 36 H 0.033 0.967 37 H 0.100 0.900 38 H 0.067 0.933 39 H 0.080 0.920 40 H 0.385 0.615 41 H 0.072 0.928 42 H 0.091 0.909 43 H 0.049 0.951 44 H 0.035 0.965 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.258 2.569 -14.882 16.347 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.188 4.188 2 C -0.101 4.101 3 C -0.197 4.197 4 C -0.061 4.061 5 N -0.255 5.255 6 C 0.093 3.907 7 C -0.556 4.556 8 H 0.077 0.923 9 C -0.198 4.198 10 N -0.575 5.575 11 Si 0.787 3.213 12 H -0.200 1.200 13 H -0.208 1.208 14 H -0.189 1.189 15 C -0.020 4.020 16 C -0.140 4.140 17 C -0.144 4.144 18 C 0.043 3.957 19 O -0.395 6.395 20 C -0.175 4.175 21 C -0.181 4.181 22 H 0.065 0.935 23 H 0.055 0.945 24 H 0.083 0.917 25 H 0.091 0.909 26 H 0.074 0.926 27 H 0.091 0.909 28 H 0.065 0.935 29 H 0.065 0.935 30 H 0.038 0.962 31 H 0.021 0.979 32 H -0.025 1.025 33 H 0.070 0.930 34 H 0.107 0.893 35 H 0.075 0.925 36 H 0.051 0.949 37 H 0.118 0.882 38 H 0.085 0.915 39 H 0.098 0.902 40 H 0.233 0.767 41 H 0.090 0.910 42 H 0.109 0.891 43 H 0.068 0.932 44 H 0.054 0.946 Dipole moment (debyes) X Y Z Total from point charges 5.154 2.464 -15.007 16.058 hybrid contribution 0.797 0.036 1.829 1.996 sum 5.951 2.500 -13.178 14.674 Atomic orbital electron populations 1.21628 0.95168 1.01431 1.00537 1.21057 0.96340 0.95894 0.96806 1.21778 1.00841 0.95053 1.02067 1.22054 0.96404 0.89074 0.98526 1.62197 1.52454 1.01899 1.08923 1.19231 0.93238 0.93407 0.84851 1.21538 1.10989 1.27341 0.95686 0.92325 1.25874 0.98979 0.95588 0.99335 1.70105 1.37365 1.35331 1.14707 0.85489 0.79193 0.79005 0.77577 1.20032 1.20811 1.18945 1.21746 0.89908 0.94507 0.95813 1.21391 0.98778 0.94884 0.98987 1.21575 0.93740 1.00611 0.98455 1.21950 0.97078 0.91162 0.85479 1.86597 1.35986 1.78327 1.38555 1.22152 0.98583 0.96659 1.00078 1.22023 0.97478 0.99222 0.99420 0.93494 0.94532 0.91742 0.90875 0.92569 0.90874 0.93519 0.93490 0.96161 0.97880 1.02531 0.92997 0.89335 0.92517 0.94858 0.88167 0.91468 0.90174 0.76663 0.90955 0.89091 0.93245 0.94645 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -4.08 9.13 71.98 0.66 -3.42 16 2 C -0.08 -2.48 2.97 -10.79 -0.03 -2.51 16 3 C -0.14 -3.44 9.19 71.99 0.66 -2.77 16 4 C 0.07 2.66 4.10 86.30 0.35 3.01 16 5 N -0.53 -23.24 3.71 -875.53 -3.25 -26.50 16 6 C 0.22 12.07 3.45 85.56 0.29 12.37 16 7 C -0.52 -30.48 8.33 25.60 0.21 -30.27 16 8 H 0.06 3.42 7.77 -2.91 -0.02 3.39 16 9 C 0.00 -0.02 5.46 84.66 0.46 0.44 16 10 N -0.93 -58.52 13.29 21.45 0.28 -58.24 16 11 Si 0.96 46.18 29.54 68.60 2.03 48.21 16 12 H -0.27 -12.83 7.11 99.48 0.71 -12.13 16 13 H -0.28 -13.20 7.11 99.48 0.71 -12.49 16 14 H -0.27 -12.21 7.11 99.48 0.71 -11.50 16 15 C 0.09 3.17 2.10 44.92 0.09 3.27 16 16 C -0.10 -3.69 5.02 30.59 0.15 -3.54 16 17 C -0.11 -2.78 5.66 30.59 0.17 -2.61 16 18 C 0.10 2.49 3.77 30.59 0.12 2.61 16 19 O -0.59 -18.11 11.97 -148.98 -1.78 -19.89 16 20 C -0.14 -3.30 5.64 30.59 0.17 -3.13 16 21 C -0.14 -4.91 4.38 30.60 0.13 -4.78 16 22 H 0.05 1.70 7.63 -2.38 -0.02 1.68 16 23 H 0.04 1.20 8.14 -2.39 -0.02 1.18 16 24 H 0.06 1.62 8.14 -2.39 -0.02 1.61 16 25 H 0.07 2.03 6.62 -2.39 -0.02 2.02 16 26 H 0.06 1.29 8.14 -2.39 -0.02 1.27 16 27 H 0.07 1.47 8.14 -2.39 -0.02 1.45 16 28 H 0.05 1.21 8.14 -2.38 -0.02 1.19 16 29 H 0.05 2.14 7.11 -2.38 -0.02 2.12 16 30 H 0.02 0.78 6.19 -2.39 -0.01 0.77 16 31 H 0.00 0.20 5.94 -2.39 -0.01 0.18 16 32 H -0.04 -2.62 7.15 -2.39 -0.02 -2.63 16 33 H 0.26 15.43 8.31 -92.71 -0.77 14.66 16 34 H 0.09 2.72 6.52 -2.38 -0.02 2.71 16 35 H 0.06 2.05 8.14 -2.39 -0.02 2.03 16 36 H 0.03 1.50 5.82 -2.39 -0.01 1.49 16 37 H 0.10 2.02 8.14 -2.38 -0.02 2.00 16 38 H 0.07 1.73 8.14 -2.39 -0.02 1.71 16 39 H 0.08 1.47 8.14 -2.39 -0.02 1.45 16 40 H 0.38 8.79 9.08 -74.05 -0.67 8.12 16 41 H 0.07 1.54 8.14 -2.39 -0.02 1.52 16 42 H 0.09 1.77 8.14 -2.39 -0.02 1.75 16 43 H 0.05 1.71 6.46 -2.39 -0.02 1.69 16 44 H 0.03 1.53 6.23 -2.38 -0.01 1.51 16 Total: -1.00 -70.01 329.41 1.02 -69.00 By element: Atomic # 1 Polarization: 18.46 SS G_CDS: 0.28 Total: 18.74 kcal Atomic # 6 Polarization: -34.78 SS G_CDS: 3.45 Total: -31.32 kcal Atomic # 7 Polarization: -81.77 SS G_CDS: -2.97 Total: -84.73 kcal Atomic # 8 Polarization: -18.11 SS G_CDS: -1.78 Total: -19.89 kcal Atomic # 14 Polarization: 46.18 SS G_CDS: 2.03 Total: 48.21 kcal Total: -70.01 1.02 -69.00 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000157298807.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -25.565 kcal (2) G-P(sol) polarization free energy of solvation -70.015 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -95.579 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.016 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.998 kcal (6) G-S(sol) free energy of system = (1) + (5) -94.563 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds